Wall clock time and date at job start Tue Mar 31 2020 09:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48497 * 109.46778 * 273.92285 * 3 2 1 5 5 H 1.48500 * 109.46956 * 33.92778 * 3 2 1 6 6 H 1.48503 * 109.46771 * 153.92561 * 3 2 1 7 7 C 1.38897 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00193 * 343.33206 * 7 2 1 9 9 N 1.37213 * 120.00039 * 163.34082 * 7 2 1 10 10 C 1.34780 * 119.99935 * 125.38735 * 9 7 2 11 11 O 1.21271 * 119.99586 * 185.09440 * 10 9 7 12 12 C 1.50694 * 120.00223 * 5.09826 * 10 9 7 13 13 O 1.42899 * 109.47309 * 183.66590 * 12 10 9 14 14 C 1.42895 * 114.00394 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47620 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.46905 * 59.99924 * 15 14 13 17 17 F 1.39898 * 109.47279 * 179.97438 * 15 14 13 18 18 F 1.39905 * 109.46801 * 300.00389 * 15 14 13 19 19 C 1.39423 * 120.00037 * 305.39078 * 9 7 2 20 20 C 1.39070 * 119.69730 * 4.99977 * 19 9 7 21 21 C 1.38371 * 119.10167 * 180.02562 * 20 19 9 22 22 C 1.38826 * 118.49147 * 0.02562 * 21 20 19 23 23 C 1.38147 * 119.31197 * 0.24831 * 22 21 20 24 24 N 1.31878 * 120.84737 * 359.48194 * 23 22 21 25 25 H 0.96995 * 119.99858 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47409 * 303.66953 * 12 10 9 27 27 H 1.09002 * 109.47177 * 63.66987 * 12 10 9 28 28 H 1.09001 * 109.47200 * 300.00645 * 14 13 12 29 29 H 1.09007 * 109.47016 * 60.00265 * 14 13 12 30 30 H 1.08002 * 120.44757 * 0.04480 * 20 19 9 31 31 H 1.08001 * 120.75477 * 180.02562 * 21 20 19 32 32 H 1.08007 * 120.34568 * 179.97438 * 22 21 20 33 33 H 1.07997 * 119.57352 * 179.74987 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4127 2.0942 -1.3968 5 1 1.4896 2.6272 0.7815 6 1 3.5848 1.4175 0.6154 7 6 2.0085 -1.2029 0.0005 8 1 1.5026 -2.1184 0.2692 9 7 3.3375 -1.2281 -0.3401 10 6 4.2386 -1.7725 0.5014 11 8 5.4222 -1.7126 0.2437 12 6 3.7756 -2.4556 1.7622 13 8 4.9113 -2.8720 2.5231 14 6 4.5810 -3.5350 3.7450 15 6 5.8664 -3.9332 4.4730 16 9 6.6180 -2.7869 4.7528 17 9 5.5430 -4.5818 5.6696 18 9 6.6138 -4.7944 3.6623 19 6 3.7556 -0.6905 -1.5567 20 6 2.8383 -0.0377 -2.3731 21 6 3.2665 0.4907 -3.5781 22 6 4.6026 0.3471 -3.9267 23 6 5.4575 -0.3185 -3.0696 24 7 5.0218 -0.8074 -1.9248 25 1 -0.4850 0.8400 -0.0004 26 1 3.1772 -1.7618 2.3527 27 1 3.1727 -3.3261 1.5035 28 1 3.9991 -2.8639 4.3768 29 1 3.9950 -4.4280 3.5270 30 1 1.8058 0.0558 -2.0705 31 1 2.5770 1.0033 -4.2325 32 1 4.9690 0.7476 -4.8605 33 1 6.4968 -0.4362 -3.3385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892463411.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:31 Heat of formation + Delta-G solvation = -181.980356 kcal Electronic energy + Delta-G solvation = -24956.369506 eV Core-core repulsion = 20568.147304 eV Total energy + Delta-G solvation = -4388.222202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.12747 -48.66951 -48.61664 -41.86199 -40.10988 -38.71520 -37.01559 -34.32530 -33.17318 -31.87204 -30.91822 -28.37565 -27.20738 -24.47753 -24.22050 -23.73009 -21.33386 -20.24700 -19.65811 -19.59652 -19.00900 -17.89895 -17.86617 -17.29739 -17.17022 -16.99671 -16.31799 -16.11261 -15.84188 -15.51603 -15.44023 -15.30975 -15.05800 -14.89384 -14.79811 -14.76933 -14.55145 -14.45682 -13.88446 -13.59959 -13.39716 -13.14799 -13.01526 -12.54641 -12.35591 -12.15031 -11.49529 -11.03316 -11.00731 -10.93186 -10.47450 -9.89759 -9.02078 -8.62637 -6.53580 0.23202 0.47660 1.16635 1.26110 1.32566 1.36107 1.79172 1.95239 2.09537 2.52288 2.69820 2.88839 2.99305 3.12391 3.47671 3.72921 3.94213 4.06584 4.10260 4.13491 4.26619 4.30524 4.38862 4.40503 4.55417 4.96234 5.16569 5.32892 5.43598 5.66076 5.81646 5.98629 6.19203 6.73754 6.95850 7.25580 7.68566 8.43650 Molecular weight = 304.08amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.004499 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.640418 B = 6221.623625 C = 7147.931079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.893 3.107 4 H -0.242 1.242 5 H -0.270 1.270 6 H -0.296 1.296 7 C -0.372 4.372 8 H 0.106 0.894 9 N -0.419 5.419 10 C 0.483 3.517 11 O -0.533 6.533 12 C 0.075 3.925 13 O -0.387 6.387 14 C 0.012 3.988 15 C 0.463 3.537 16 F -0.189 7.189 17 F -0.170 7.170 18 F -0.187 7.187 19 C 0.325 3.675 20 C -0.220 4.220 21 C -0.060 4.060 22 C -0.206 4.206 23 C 0.103 3.897 24 N -0.529 5.529 25 H 0.288 0.712 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -2.632 2.145 4.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.166 1.166 5 H -0.195 1.195 6 H -0.222 1.222 7 C -0.498 4.498 8 H 0.123 0.877 9 N -0.136 5.136 10 C 0.273 3.727 11 O -0.409 6.409 12 C -0.003 4.003 13 O -0.306 6.306 14 C -0.065 4.065 15 C 0.409 3.591 16 F -0.171 7.171 17 F -0.151 7.151 18 F -0.169 7.169 19 C 0.097 3.903 20 C -0.243 4.243 21 C -0.086 4.086 22 C -0.227 4.227 23 C -0.055 4.055 24 N -0.245 5.245 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.181 0.819 32 H 0.191 0.809 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.277 -2.963 2.655 5.841 hybrid contribution -0.402 1.061 -0.113 1.140 sum 3.875 -1.902 2.541 5.010 Atomic orbital electron populations 1.69730 1.06594 1.29755 1.43904 1.25654 0.95258 0.99783 0.92733 0.86732 0.78757 0.82176 0.80503 1.16576 1.19522 1.22219 1.18952 0.82472 0.96409 1.52011 0.87671 1.41532 1.08196 1.51978 1.11874 1.21260 0.85552 0.80411 0.85490 1.90671 1.17593 1.57766 1.74823 1.22080 0.87082 1.00711 0.90412 1.87898 1.31955 1.77566 1.33191 1.23828 0.92246 1.02583 0.87885 1.20346 0.86582 0.74591 0.77589 1.93193 1.79174 1.50759 1.93928 1.93208 1.92596 1.81897 1.47397 1.93196 1.79351 1.71216 1.73132 1.19424 0.89592 0.93512 0.87769 1.21953 1.01510 1.03466 0.97376 1.21795 0.97063 0.95422 0.94317 1.22321 0.93777 1.03637 1.02939 1.23181 1.01365 0.92790 0.88132 1.67646 1.14902 1.22759 1.19206 0.90128 0.87640 0.87295 0.85741 0.85394 0.84454 0.81893 0.80891 0.80562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.43 13.96 21.65 0.30 -42.12 16 2 C 0.08 3.63 3.80 84.91 0.32 3.95 16 3 Si 0.89 40.27 24.80 68.60 1.70 41.97 16 4 H -0.24 -10.30 6.15 99.48 0.61 -9.69 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 7 C -0.37 -17.94 8.05 84.01 0.68 -17.26 16 8 H 0.11 5.10 7.97 -2.91 -0.02 5.07 16 9 N -0.42 -20.51 2.10 -464.38 -0.97 -21.49 16 10 C 0.48 23.13 7.66 87.65 0.67 23.80 16 11 O -0.53 -28.88 14.80 16.01 0.24 -28.65 16 12 C 0.08 2.72 5.25 71.23 0.37 3.09 16 13 O -0.39 -13.55 9.77 -129.97 -1.27 -14.82 16 14 C 0.01 0.28 5.90 71.98 0.42 0.71 16 15 C 0.46 11.73 3.32 71.98 0.24 11.97 16 16 F -0.19 -5.61 17.26 44.97 0.78 -4.83 16 17 F -0.17 -3.69 17.32 44.97 0.78 -2.91 16 18 F -0.19 -5.47 17.26 44.97 0.78 -4.69 16 19 C 0.33 15.63 6.05 132.91 0.80 16.44 16 20 C -0.22 -9.42 6.07 22.50 0.14 -9.28 16 21 C -0.06 -2.01 10.16 22.44 0.23 -1.78 16 22 C -0.21 -6.09 10.11 22.39 0.23 -5.87 16 23 C 0.10 3.71 11.18 84.66 0.95 4.66 16 24 N -0.53 -24.89 7.92 -192.96 -1.53 -26.42 16 25 H 0.29 13.10 8.31 -92.71 -0.77 12.33 16 26 H 0.11 3.50 7.92 -2.39 -0.02 3.49 16 27 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.14 6.24 4.81 -2.91 -0.01 6.23 16 31 H 0.16 4.14 8.06 -2.91 -0.02 4.11 16 32 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.18 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -68.12 300.70 6.92 -61.20 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.07 Total: 12.33 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: 5.05 Total: 30.43 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -2.20 Total: -90.03 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.03 Total: -43.47 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 2.33 Total: -12.44 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.70 Total: 41.97 kcal Total: -68.12 6.92 -61.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892463411.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.778 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds