Wall clock time and date at job start Tue Mar 31 2020 09:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48498 * 109.47163 * 240.00016 * 3 2 1 5 5 H 1.48493 * 109.47514 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46955 * 120.00480 * 3 2 1 7 7 C 1.38616 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00346 * 180.02562 * 7 2 1 9 9 O 1.34804 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00274 * 174.69125 * 9 7 2 11 11 C 1.38724 * 120.10021 * 353.33217 * 10 9 7 12 12 C 1.38181 * 120.00288 * 180.02562 * 11 10 9 13 13 C 1.38360 * 120.21942 * 359.70204 * 12 11 10 14 14 C 1.38179 * 120.20417 * 0.55286 * 13 12 11 15 15 C 1.38788 * 119.98975 * 359.47091 * 14 13 12 16 16 N 1.39746 * 120.10445 * 180.27345 * 15 14 13 17 17 C 1.40049 * 119.99740 * 240.08869 * 16 15 14 18 18 C 1.39503 * 120.09770 * 218.45825 * 17 16 15 19 19 N 1.39974 * 120.09453 * 359.97405 * 18 17 16 20 20 C 1.38661 * 119.81228 * 179.74370 * 18 17 16 21 21 C 1.38292 * 120.02264 * 0.53064 * 20 18 17 22 22 C 1.38243 * 120.20549 * 359.72026 * 21 20 18 23 23 C 1.38376 * 120.18504 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 120.00892 * 179.97438 * 23 22 21 25 25 H 0.96998 * 120.00233 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99687 * 0.02562 * 11 10 9 27 27 H 1.07999 * 119.88276 * 179.97438 * 12 11 10 28 28 H 1.07994 * 119.89549 * 180.27431 * 13 12 11 29 29 H 1.07996 * 119.99904 * 179.74188 * 14 13 12 30 30 H 0.96996 * 120.00122 * 60.08320 * 16 15 14 31 31 H 0.97000 * 119.99668 * 359.97438 * 19 18 17 32 32 H 0.96995 * 119.99884 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.99049 * 180.22701 * 20 18 17 34 34 H 1.08001 * 119.89794 * 179.70012 * 21 20 18 35 35 H 1.08004 * 119.90427 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0090 -1.2004 -0.0005 8 1 3.0889 -1.2004 -0.0001 9 8 1.3350 -2.3679 -0.0005 10 6 2.0700 -3.5040 -0.1130 11 6 3.4330 -3.4293 -0.3597 12 6 4.1790 -4.5868 -0.4743 13 6 3.5721 -5.8227 -0.3377 14 6 2.2141 -5.9076 -0.0971 15 6 1.4566 -4.7505 0.0191 16 7 0.0840 -4.8334 0.2681 17 6 -0.8275 -4.2895 -0.6455 18 6 -1.9732 -3.6386 -0.1874 19 7 -2.2153 -3.5276 1.1867 20 6 -2.8690 -3.0976 -1.0972 21 6 -2.6315 -3.2135 -2.4546 22 6 -1.4991 -3.8629 -2.9096 23 6 -0.5967 -4.4014 -2.0092 24 17 0.8234 -5.2166 -2.5856 25 1 -0.4850 0.8400 0.0004 26 1 3.9112 -2.4664 -0.4622 27 1 5.2399 -4.5264 -0.6668 28 1 4.1609 -6.7239 -0.4239 29 1 1.7431 -6.8741 0.0048 30 1 -0.2374 -5.2677 1.0737 31 1 -1.5862 -3.9040 1.8219 32 1 -3.0125 -3.0751 1.5037 33 1 -3.7550 -2.5898 -0.7456 34 1 -3.3330 -2.7956 -3.1615 35 1 -1.3182 -3.9503 -3.9708 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:25 Heat of formation + Delta-G solvation = 37.662648 kcal Electronic energy + Delta-G solvation = -22877.801736 eV Core-core repulsion = 19481.669875 eV Total energy + Delta-G solvation = -3396.131862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.54621 -38.48524 -36.35011 -35.71073 -34.56316 -33.55145 -32.16327 -29.81092 -28.82090 -28.20993 -26.87794 -25.22208 -22.35768 -21.58322 -21.43056 -20.52259 -17.84979 -17.36750 -17.20519 -16.49017 -15.71975 -15.55410 -14.55740 -14.48933 -14.04489 -13.82160 -13.62253 -13.53571 -13.34725 -13.17557 -12.79165 -12.46512 -11.63039 -11.50377 -11.34300 -11.17475 -11.09985 -10.94075 -10.79451 -10.73354 -10.44672 -10.02785 -9.77086 -9.44313 -9.27153 -8.74793 -7.87178 -7.45433 -7.08271 -6.36158 -6.32702 -3.91862 1.91507 2.12769 2.37394 2.48629 2.96900 3.16085 3.17427 3.18840 4.00790 4.09758 4.34347 4.60263 4.67331 5.18506 5.31762 5.50779 5.69065 5.75791 5.87513 5.91384 6.06356 6.15736 6.27676 6.37912 6.56850 6.76492 6.77898 6.81057 7.08790 7.13444 7.22372 7.30401 7.40956 7.46948 7.72051 7.92274 8.05299 8.26063 8.31475 8.42157 9.09644 9.82076 10.80597 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.008488 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.603505 B = 3297.847757 C = 4753.086387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.932 3.068 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.392 4.392 8 H 0.086 0.914 9 O -0.159 6.159 10 C 0.143 3.857 11 C -0.226 4.226 12 C -0.084 4.084 13 C -0.203 4.203 14 C -0.087 4.087 15 C 0.093 3.907 16 N -0.692 5.692 17 C 0.154 3.846 18 C 0.208 3.792 19 N -0.869 5.869 20 C -0.169 4.169 21 C -0.099 4.099 22 C -0.148 4.148 23 C -0.031 4.031 24 Cl -0.069 7.069 25 H 0.266 0.734 26 H 0.125 0.875 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.392 0.608 31 H 0.393 0.607 32 H 0.395 0.605 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -7.984 -0.547 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.161 4.161 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.103 0.897 9 O -0.062 6.062 10 C 0.087 3.913 11 C -0.246 4.246 12 C -0.103 4.103 13 C -0.222 4.222 14 C -0.107 4.107 15 C -0.001 4.001 16 N -0.323 5.323 17 C 0.052 3.948 18 C 0.101 3.899 19 N -0.409 5.409 20 C -0.193 4.193 21 C -0.119 4.119 22 C -0.170 4.170 23 C -0.062 4.062 24 Cl -0.040 7.040 25 H 0.076 0.924 26 H 0.142 0.858 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.228 0.772 31 H 0.221 0.779 32 H 0.222 0.778 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.343 -7.774 -0.706 8.492 hybrid contribution 0.710 0.952 0.537 1.303 sum -2.632 -6.822 -0.169 7.315 Atomic orbital electron populations 1.70066 1.05538 1.27116 1.45626 1.25160 0.95776 0.98355 0.96851 0.85922 0.78812 0.80480 0.79040 1.19661 1.20444 1.19773 1.21192 0.91557 0.81215 1.52856 0.89696 1.84039 1.33328 1.10794 1.78015 1.19558 0.90168 0.87688 0.93884 1.21034 0.94079 0.98838 1.10675 1.20698 0.98317 0.92390 0.98891 1.20379 0.94390 0.96633 1.10834 1.20660 0.93962 0.95929 1.00189 1.16557 0.82947 0.90224 1.10363 1.40995 1.01458 1.65823 1.23978 1.16731 0.90747 0.99599 0.87688 1.17282 0.93869 0.93890 0.84844 1.42115 1.28533 1.67067 1.03144 1.20289 1.00579 1.05709 0.92689 1.20485 0.97091 0.99557 0.94736 1.20486 0.95213 1.02844 0.98414 1.20500 0.90825 1.02970 0.91954 1.98334 1.39272 1.77568 1.88787 0.92428 0.85776 0.87838 0.87850 0.87274 0.77199 0.77948 0.77769 0.86561 0.86366 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.20 13.67 55.48 0.76 -23.45 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 3 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.88 9.43 30.87 0.29 -10.58 16 8 H 0.09 2.23 5.32 -52.49 -0.28 1.95 16 9 O -0.16 -4.38 8.76 0.02 0.00 -4.38 16 10 C 0.14 3.41 6.34 -38.91 -0.25 3.16 16 11 C -0.23 -5.01 9.12 -39.42 -0.36 -5.37 16 12 C -0.08 -1.59 10.04 -39.56 -0.40 -1.99 16 13 C -0.20 -3.58 10.04 -39.56 -0.40 -3.97 16 14 C -0.09 -1.57 8.41 -39.40 -0.33 -1.91 16 15 C 0.09 1.92 3.67 -83.56 -0.31 1.61 16 16 N -0.69 -13.04 4.78 -8.10 -0.04 -13.08 16 17 C 0.15 3.08 5.44 -83.44 -0.45 2.62 16 18 C 0.21 3.88 6.78 -83.51 -0.57 3.31 16 19 N -0.87 -13.66 9.08 32.54 0.30 -13.36 16 20 C -0.17 -2.97 9.89 -39.41 -0.39 -3.36 16 21 C -0.10 -1.69 10.04 -39.56 -0.40 -2.09 16 22 C -0.15 -2.74 9.82 -39.53 -0.39 -3.12 16 23 C -0.03 -0.63 6.24 -39.34 -0.25 -0.88 16 24 Cl -0.07 -1.33 24.52 -51.86 -1.27 -2.60 16 25 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.12 2.79 5.73 -52.49 -0.30 2.49 16 27 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.39 6.31 7.99 -40.82 -0.33 5.98 16 31 H 0.39 5.90 7.52 -40.82 -0.31 5.59 16 32 H 0.39 5.29 8.85 -40.82 -0.36 4.93 16 33 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -31.01 314.51 -8.07 -39.08 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -3.25 Total: 18.79 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -4.28 Total: -21.47 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 1.02 Total: -49.89 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.00 Total: -4.38 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.27 Total: -2.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.01 -8.07 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.739 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds