Wall clock time and date at job start Tue Mar 31 2020 09:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48498 * 109.47163 * 240.00016 * 3 2 1 5 5 H 1.48493 * 109.47514 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46955 * 120.00480 * 3 2 1 7 7 C 1.38616 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00346 * 180.02562 * 7 2 1 9 9 O 1.34804 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00274 * 174.69125 * 9 7 2 11 11 C 1.38724 * 120.10021 * 353.33217 * 10 9 7 12 12 C 1.38181 * 120.00288 * 180.02562 * 11 10 9 13 13 C 1.38360 * 120.21942 * 359.70204 * 12 11 10 14 14 C 1.38179 * 120.20417 * 0.55286 * 13 12 11 15 15 C 1.38788 * 119.98975 * 359.47091 * 14 13 12 16 16 N 1.39746 * 120.10445 * 180.27345 * 15 14 13 17 17 C 1.40049 * 119.99740 * 240.08869 * 16 15 14 18 18 C 1.39503 * 120.09770 * 218.45825 * 17 16 15 19 19 N 1.39974 * 120.09453 * 359.97405 * 18 17 16 20 20 C 1.38661 * 119.81228 * 179.74370 * 18 17 16 21 21 C 1.38292 * 120.02264 * 0.53064 * 20 18 17 22 22 C 1.38243 * 120.20549 * 359.72026 * 21 20 18 23 23 C 1.38376 * 120.18504 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 120.00892 * 179.97438 * 23 22 21 25 25 H 0.96998 * 120.00233 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99687 * 0.02562 * 11 10 9 27 27 H 1.07999 * 119.88276 * 179.97438 * 12 11 10 28 28 H 1.07994 * 119.89549 * 180.27431 * 13 12 11 29 29 H 1.07996 * 119.99904 * 179.74188 * 14 13 12 30 30 H 0.96996 * 120.00122 * 60.08320 * 16 15 14 31 31 H 0.97000 * 119.99668 * 359.97438 * 19 18 17 32 32 H 0.96995 * 119.99884 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.99049 * 180.22701 * 20 18 17 34 34 H 1.08001 * 119.89794 * 179.70012 * 21 20 18 35 35 H 1.08004 * 119.90427 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6964 1.2125 7 6 2.0090 -1.2004 -0.0005 8 1 3.0889 -1.2004 -0.0001 9 8 1.3350 -2.3679 -0.0005 10 6 2.0700 -3.5040 -0.1130 11 6 3.4330 -3.4293 -0.3597 12 6 4.1790 -4.5868 -0.4743 13 6 3.5721 -5.8227 -0.3377 14 6 2.2141 -5.9076 -0.0971 15 6 1.4566 -4.7505 0.0191 16 7 0.0840 -4.8334 0.2681 17 6 -0.8275 -4.2895 -0.6455 18 6 -1.9732 -3.6386 -0.1874 19 7 -2.2153 -3.5276 1.1867 20 6 -2.8690 -3.0976 -1.0972 21 6 -2.6315 -3.2135 -2.4546 22 6 -1.4991 -3.8629 -2.9096 23 6 -0.5967 -4.4014 -2.0092 24 17 0.8234 -5.2166 -2.5856 25 1 -0.4850 0.8400 0.0004 26 1 3.9112 -2.4664 -0.4622 27 1 5.2399 -4.5264 -0.6668 28 1 4.1609 -6.7239 -0.4239 29 1 1.7431 -6.8741 0.0048 30 1 -0.2374 -5.2677 1.0737 31 1 -1.5862 -3.9040 1.8219 32 1 -3.0125 -3.0751 1.5037 33 1 -3.7550 -2.5898 -0.7456 34 1 -3.3330 -2.7956 -3.1615 35 1 -1.3182 -3.9503 -3.9708 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:25 Heat of formation + Delta-G solvation = 18.412237 kcal Electronic energy + Delta-G solvation = -22878.636497 eV Core-core repulsion = 19481.669875 eV Total energy + Delta-G solvation = -3396.966622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08877 -40.01884 -38.05298 -37.19177 -36.02273 -34.92137 -34.12278 -31.31165 -30.40149 -29.64123 -28.37921 -27.14412 -23.82862 -23.22132 -22.87229 -22.04310 -19.67816 -18.93534 -18.72332 -17.92654 -17.25282 -17.03479 -16.29379 -16.13371 -15.54524 -15.27577 -15.16801 -15.02047 -14.96528 -14.70454 -14.35116 -14.13263 -13.47567 -13.12502 -12.75049 -12.67140 -12.55216 -12.53703 -12.33540 -12.30097 -12.14376 -11.54579 -11.23722 -11.13912 -10.78295 -10.68369 -9.40104 -8.98553 -8.64283 -8.32906 -7.78330 -5.96442 0.44489 0.66344 0.85030 0.93272 1.35011 1.43848 1.47512 1.48563 2.20855 2.64933 2.93415 2.99770 3.27360 3.31112 3.63039 4.19336 4.25991 4.34863 4.36220 4.54050 4.63007 4.72608 4.80927 4.92301 5.10673 5.20406 5.21122 5.32886 5.38558 5.68921 5.69923 5.74619 5.88036 5.96350 6.09472 6.20972 6.51243 6.81827 7.01766 7.07718 7.11400 7.95659 8.85775 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.008488 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.603505 B = 3297.847757 C = 4753.086387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.413 4.413 8 H 0.086 0.914 9 O -0.198 6.198 10 C 0.107 3.893 11 C -0.243 4.243 12 C -0.087 4.087 13 C -0.181 4.181 14 C -0.086 4.086 15 C 0.098 3.902 16 N -0.689 5.689 17 C 0.131 3.869 18 C 0.195 3.805 19 N -0.861 5.861 20 C -0.181 4.181 21 C -0.097 4.097 22 C -0.165 4.165 23 C -0.053 4.053 24 Cl -0.071 7.071 25 H 0.265 0.735 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.403 0.597 31 H 0.395 0.605 32 H 0.405 0.595 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 -9.133 -0.674 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.103 0.897 9 O -0.104 6.104 10 C 0.054 3.946 11 C -0.263 4.263 12 C -0.106 4.106 13 C -0.200 4.200 14 C -0.107 4.107 15 C 0.003 3.997 16 N -0.321 5.321 17 C 0.029 3.971 18 C 0.087 3.913 19 N -0.401 5.401 20 C -0.205 4.205 21 C -0.117 4.117 22 C -0.186 4.186 23 C -0.084 4.084 24 Cl -0.042 7.042 25 H 0.074 0.926 26 H 0.127 0.873 27 H 0.152 0.848 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.241 0.759 31 H 0.223 0.777 32 H 0.235 0.765 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.623 -8.971 -0.813 9.382 hybrid contribution 0.557 1.035 0.566 1.304 sum -2.066 -7.936 -0.247 8.205 Atomic orbital electron populations 1.70198 1.07000 1.27726 1.47963 1.26161 0.96751 1.01505 0.96521 0.84922 0.77628 0.76061 0.79318 1.19101 1.19772 1.18857 1.21533 0.91883 0.82230 1.53286 0.89667 1.84003 1.34180 1.11366 1.80804 1.20084 0.91037 0.87928 0.95544 1.21158 0.94006 0.99634 1.11482 1.21034 0.99745 0.91675 0.98120 1.20898 0.94354 0.97587 1.07147 1.21019 0.94321 0.96202 0.99110 1.16816 0.83834 0.89885 1.09173 1.40943 1.00867 1.65864 1.24437 1.16950 0.91507 1.00652 0.87982 1.17563 0.93897 0.93750 0.86091 1.42085 1.28948 1.66809 1.02305 1.20687 1.01207 1.05580 0.92983 1.20903 0.97050 0.98446 0.95301 1.20792 0.95576 1.03177 0.99104 1.20812 0.91207 1.03820 0.92553 1.98307 1.39581 1.77627 1.88731 0.92580 0.87282 0.84766 0.83863 0.84539 0.75936 0.77707 0.76508 0.84344 0.83230 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.38 13.67 21.61 0.30 -52.09 16 2 C -0.01 -0.55 5.49 84.82 0.47 -0.08 16 3 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.41 -23.73 9.43 67.91 0.64 -23.09 16 8 H 0.09 4.67 5.32 -2.91 -0.02 4.66 16 9 O -0.20 -11.29 8.76 -22.85 -0.20 -11.49 16 10 C 0.11 5.17 6.34 22.70 0.14 5.31 16 11 C -0.24 -10.77 9.12 22.37 0.20 -10.56 16 12 C -0.09 -3.08 10.04 22.29 0.22 -2.86 16 13 C -0.18 -5.69 10.04 22.28 0.22 -5.47 16 14 C -0.09 -2.90 8.41 22.39 0.19 -2.71 16 15 C 0.10 3.95 3.67 38.33 0.14 4.09 16 16 N -0.69 -25.88 4.78 -179.55 -0.86 -26.74 16 17 C 0.13 5.25 5.44 38.26 0.21 5.46 16 18 C 0.19 7.28 6.78 38.25 0.26 7.54 16 19 N -0.86 -27.08 9.08 -50.97 -0.46 -27.54 16 20 C -0.18 -6.26 9.89 22.38 0.22 -6.04 16 21 C -0.10 -3.25 10.04 22.28 0.22 -3.02 16 22 C -0.17 -6.06 9.82 22.30 0.22 -5.84 16 23 C -0.05 -2.14 6.24 22.43 0.14 -2.00 16 24 Cl -0.07 -2.72 24.52 -2.72 -0.07 -2.79 16 25 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.11 5.06 5.73 -2.91 -0.02 5.04 16 27 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 28 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 30 H 0.40 12.84 7.99 -92.71 -0.74 12.10 16 31 H 0.39 11.94 7.52 -92.71 -0.70 11.25 16 32 H 0.41 10.72 8.85 -92.71 -0.82 9.90 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -68.96 314.51 3.16 -65.80 By element: Atomic # 1 Polarization: 49.78 SS G_CDS: -1.08 Total: 48.70 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 3.50 Total: -39.26 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -1.03 Total: -106.37 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.20 Total: -11.49 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.07 Total: -2.79 kcal Total: -68.96 3.16 -65.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.217 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds