Wall clock time and date at job start Tue Mar 31 2020 09:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86799 * 120.00623 * 2 1 4 4 H 1.48495 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.46812 * 299.99910 * 3 2 1 6 6 H 1.48493 * 109.47062 * 59.99482 * 3 2 1 7 7 C 1.38626 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99943 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.35784 * 116.99593 * 174.88910 * 9 7 2 11 11 C 1.38912 * 119.99730 * 5.52945 * 10 9 7 12 12 C 1.37998 * 120.01033 * 180.02562 * 11 10 9 13 13 C 1.38960 * 119.98891 * 359.97438 * 12 11 10 14 14 N 1.39842 * 120.00170 * 179.97438 * 13 12 11 15 15 C 1.39060 * 120.00166 * 147.27340 * 14 13 12 16 16 N 1.32446 * 119.70188 * 354.99915 * 15 14 13 17 17 C 1.31929 * 121.61897 * 180.26778 * 16 15 14 18 18 C 1.38080 * 120.85798 * 359.73192 * 17 16 15 19 19 C 1.38841 * 119.33055 * 359.97438 * 18 17 16 20 20 C 1.38350 * 118.50121 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.44615 * 179.97438 * 20 19 18 22 22 Cl 1.80296 * 109.47354 * 89.99635 * 21 20 19 23 23 C 1.38955 * 119.99191 * 0.25748 * 13 12 11 24 24 C 1.37998 * 119.99275 * 359.50982 * 23 13 12 25 25 H 0.97002 * 119.99309 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99421 * 0.02562 * 11 10 9 27 27 H 1.07999 * 120.00562 * 179.97438 * 12 11 10 28 28 H 0.97003 * 119.99855 * 327.26647 * 14 13 12 29 29 H 1.08005 * 119.57011 * 179.71157 * 17 16 15 30 30 H 1.08002 * 120.33811 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.75038 * 180.02562 * 19 18 17 32 32 H 1.08994 * 109.47121 * 329.99296 * 21 20 19 33 33 H 1.09001 * 109.46377 * 209.99689 * 21 20 19 34 34 H 1.08000 * 120.00345 * 179.72852 * 23 13 12 35 35 H 1.08003 * 119.99952 * 180.23222 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2500 1.6176 0.0000 4 1 3.7099 1.3462 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3964 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3347 -2.3680 0.0016 10 6 2.0699 -3.5045 -0.1057 11 6 3.4574 -3.4377 -0.0944 12 6 4.2049 -4.5925 -0.2040 13 6 3.5695 -5.8223 -0.3251 14 7 4.3268 -6.9927 -0.4367 15 6 3.8498 -8.1833 0.1005 16 7 2.7265 -8.1832 0.8022 17 6 2.2426 -9.2897 1.3332 18 6 2.8927 -10.4969 1.1699 19 6 4.0705 -10.5412 0.4359 20 6 4.5535 -9.3648 -0.1088 21 6 5.8282 -9.3624 -0.9127 22 17 5.4434 -9.6508 -2.6504 23 6 2.1816 -5.8885 -0.3413 24 6 1.4346 -4.7338 -0.2268 25 1 -0.4849 0.8401 -0.0004 26 1 3.9512 -2.4818 0.0002 27 1 5.2836 -4.5404 -0.1956 28 1 5.1847 -6.9739 -0.8889 29 1 1.3261 -9.2508 1.9033 30 1 2.4893 -11.3976 1.6086 31 1 4.5976 -11.4730 0.2934 32 1 6.4875 -10.1512 -0.5508 33 1 6.3234 -8.3973 -0.8055 34 1 1.6876 -6.8438 -0.4398 35 1 0.3558 -4.7855 -0.2356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212607197.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:21 Heat of formation + Delta-G solvation = 19.814168 kcal Electronic energy + Delta-G solvation = -21135.142057 eV Core-core repulsion = 17738.236227 eV Total energy + Delta-G solvation = -3396.905830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62438 -40.59188 -38.65170 -37.00749 -36.03327 -34.30181 -34.10305 -32.04184 -31.46611 -29.06263 -27.90433 -27.19086 -24.25892 -23.92482 -22.75378 -22.34473 -19.92028 -19.03004 -18.86755 -18.11476 -16.68626 -16.53133 -16.25158 -16.13854 -15.85795 -15.48579 -15.38461 -15.16560 -14.61523 -14.51483 -14.44381 -14.14958 -13.78916 -13.60444 -13.25330 -13.16149 -12.93223 -12.76432 -12.37613 -12.08179 -11.70775 -11.55503 -11.35559 -11.16218 -10.76372 -10.60177 -10.26759 -9.76574 -9.45069 -8.43803 -8.17370 -6.09912 0.03353 0.37095 0.58278 0.90895 1.36793 1.45470 1.54846 1.55257 2.13316 2.20609 2.82545 3.01728 3.21473 3.44732 3.57624 3.73255 3.83554 4.02204 4.11617 4.17526 4.21298 4.49891 4.52120 4.55274 4.68113 4.78676 4.92063 5.07988 5.13876 5.25320 5.32285 5.40769 5.50892 5.65839 5.72696 5.96883 6.06033 6.39529 6.42521 7.01144 7.28683 7.83669 8.80178 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.003043 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.201687 B = 9199.221510 C = 9877.321583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.019 2.981 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.410 4.410 8 H 0.103 0.897 9 O -0.234 6.234 10 C 0.101 3.899 11 C -0.218 4.218 12 C -0.096 4.096 13 C 0.088 3.912 14 N -0.648 5.648 15 C 0.392 3.608 16 N -0.564 5.564 17 C 0.136 3.864 18 C -0.224 4.224 19 C -0.015 4.015 20 C -0.225 4.225 21 C 0.024 3.976 22 Cl -0.199 7.199 23 C -0.064 4.064 24 C -0.184 4.184 25 H 0.271 0.729 26 H 0.127 0.873 27 H 0.148 0.852 28 H 0.421 0.579 29 H 0.170 0.830 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.959 -22.560 0.516 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.121 0.879 9 O -0.141 6.141 10 C 0.051 3.949 11 C -0.238 4.238 12 C -0.117 4.117 13 C -0.007 4.007 14 N -0.275 5.275 15 C 0.158 3.842 16 N -0.280 5.280 17 C -0.022 4.022 18 C -0.246 4.246 19 C -0.041 4.041 20 C -0.232 4.232 21 C -0.039 4.039 22 Cl -0.172 7.172 23 C -0.084 4.084 24 C -0.204 4.204 25 H 0.080 0.920 26 H 0.144 0.856 27 H 0.166 0.834 28 H 0.261 0.739 29 H 0.187 0.813 30 H 0.181 0.819 31 H 0.185 0.815 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.154 0.846 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.025 -21.538 0.536 25.176 hybrid contribution 0.426 0.355 -0.282 0.622 sum 13.451 -21.183 0.254 25.094 Atomic orbital electron populations 1.70215 1.08057 1.28594 1.49321 1.26593 0.96852 1.02753 0.96063 0.84520 0.78325 0.74852 0.78439 1.17270 1.19485 1.19474 1.21871 0.92564 0.81458 1.52767 0.87936 1.83952 1.35843 1.12486 1.81814 1.19838 0.91601 0.87784 0.95696 1.21043 0.92752 0.99584 1.10418 1.20743 1.00114 0.90085 1.00726 1.17301 0.90476 0.85854 1.07114 1.41808 1.22519 1.03935 1.59253 1.18427 0.90079 0.85930 0.89798 1.67450 1.13692 1.32745 1.14159 1.23008 0.98683 0.87315 0.93160 1.22186 0.97853 0.99953 1.04585 1.21639 0.94143 0.97366 0.90943 1.20093 1.01689 0.93084 1.08301 1.23084 0.94649 1.06628 0.79513 1.98757 1.95924 1.97370 1.25182 1.20711 0.92590 0.96816 0.98314 1.20253 0.99697 0.90158 1.10324 0.91966 0.85558 0.83441 0.73880 0.81257 0.81916 0.81496 0.84674 0.87786 0.84591 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.60 13.67 21.61 0.30 -57.30 16 2 C -0.03 -1.48 5.49 84.82 0.47 -1.01 16 3 Si 1.02 43.30 29.55 68.60 2.03 45.33 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.41 -24.18 9.48 67.91 0.64 -23.54 16 8 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 9 O -0.23 -14.40 9.75 -22.93 -0.22 -14.62 16 10 C 0.10 5.19 6.65 22.59 0.15 5.34 16 11 C -0.22 -9.60 9.16 22.37 0.20 -9.39 16 12 C -0.10 -3.36 9.96 22.39 0.22 -3.14 16 13 C 0.09 2.98 6.31 38.21 0.24 3.22 16 14 N -0.65 -16.75 5.40 -185.36 -1.00 -17.75 16 15 C 0.39 9.73 7.20 133.02 0.96 10.69 16 16 N -0.56 -15.69 7.05 -193.20 -1.36 -17.05 16 17 C 0.14 2.79 11.17 84.64 0.95 3.74 16 18 C -0.22 -3.23 10.10 22.38 0.23 -3.00 16 19 C -0.02 -0.20 9.85 22.44 0.22 0.02 16 20 C -0.22 -3.89 5.29 -19.63 -0.10 -3.99 16 21 C 0.02 0.29 6.41 71.24 0.46 0.75 16 22 Cl -0.20 -3.48 29.13 -2.72 -0.08 -3.56 16 23 C -0.06 -2.46 8.57 22.38 0.19 -2.27 16 24 C -0.18 -8.44 9.98 22.37 0.22 -8.22 16 25 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 26 H 0.13 5.54 5.63 -2.91 -0.02 5.53 16 27 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.42 8.40 6.75 -92.71 -0.63 7.78 16 29 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.14 0.82 8.09 -2.39 -0.02 0.80 16 33 H 0.10 1.06 6.48 -2.39 -0.02 1.05 16 34 H 0.14 4.97 6.22 -2.91 -0.02 4.95 16 35 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -76.20 318.49 5.23 -70.97 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.52 Total: 24.79 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 5.05 Total: -30.80 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -2.07 Total: -92.10 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.22 Total: -14.62 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -0.08 Total: -3.56 kcal Total: -76.20 5.23 -70.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607197.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.783 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds