Wall clock time and date at job start Tue Mar 31 2020 08:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35879 * 117.00208 * 2 1 4 4 C 1.39499 * 119.77105 * 0.02562 * 3 2 1 5 5 C 1.37898 * 120.63131 * 180.02562 * 4 3 2 6 6 C 1.39249 * 120.15631 * 0.02562 * 5 4 3 7 7 C 1.47708 * 120.22799 * 180.02562 * 6 5 4 8 8 C 1.39704 * 120.17896 * 64.71606 * 7 6 5 9 9 C 1.37856 * 119.92005 * 180.27434 * 8 7 6 10 10 C 1.38510 * 120.29082 * 0.02727 * 9 8 7 11 11 C 1.38293 * 120.36705 * 359.95295 * 10 9 8 12 12 Cl 1.73605 * 119.96608 * 180.02562 * 11 10 9 13 13 C 1.38645 * 120.06868 * 0.04121 * 11 10 9 14 14 O 1.35820 * 120.14400 * 179.97438 * 13 11 10 15 15 C 1.41954 * 119.54368 * 0.26654 * 6 5 4 16 16 C 1.40850 * 120.30227 * 179.70349 * 15 6 5 17 17 H 1.07996 * 120.00113 * 25.24742 * 16 15 6 18 18 C 1.40026 * 119.99980 * 205.23926 * 16 15 6 19 19 N 1.30802 * 119.99491 * 15.31420 * 18 16 15 20 20 Si 1.86801 * 120.00153 * 195.30842 * 18 16 15 21 21 H 1.48505 * 109.46794 * 94.96965 * 20 18 16 22 22 H 1.48493 * 109.47243 * 214.97011 * 20 18 16 23 23 H 1.48505 * 109.46951 * 334.97235 * 20 18 16 24 24 C 1.37890 * 119.77540 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47452 * 299.99667 * 1 2 3 27 27 H 1.09001 * 109.46979 * 59.99999 * 1 2 3 28 28 H 1.08000 * 119.68622 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.92260 * 179.97438 * 5 4 3 30 30 H 1.07993 * 120.03863 * 0.28341 * 8 7 6 31 31 H 1.07995 * 119.85072 * 179.97438 * 9 8 7 32 32 H 1.08006 * 119.81496 * 179.97438 * 10 9 8 33 33 H 0.96700 * 114.00208 * 269.98385 * 14 13 11 34 34 H 0.96999 * 119.99358 * 179.97438 * 19 18 16 35 35 H 1.08005 * 120.08467 * 359.96119 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2815 2.3776 0.0005 5 6 1.8891 3.6155 0.0000 6 6 3.2781 3.7130 -0.0016 7 6 3.9306 5.0382 -0.0016 8 6 3.7794 5.8954 1.0911 9 6 4.3860 7.1333 1.0830 10 6 5.1453 7.5321 -0.0046 11 6 5.3032 6.6930 -1.0924 12 17 6.2577 7.2032 -2.4498 13 6 4.6999 5.4447 -1.1002 14 8 4.8536 4.6195 -2.1679 15 6 4.0628 2.5301 -0.0084 16 6 5.4690 2.6101 -0.0165 17 1 5.9624 3.4845 0.3813 18 6 6.2273 1.5557 -0.5400 19 7 5.6546 0.6446 -1.2835 20 14 8.0566 1.4505 -0.1768 21 1 8.2788 0.5618 0.9921 22 1 8.7653 0.8993 -1.3596 23 1 8.5799 2.8069 0.1262 24 6 3.4232 1.2774 -0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2035 2.3109 0.0005 29 1 1.2861 4.5115 0.0000 30 1 3.1880 5.5886 1.9411 31 1 4.2680 7.7952 1.9281 32 1 5.6168 8.5038 -0.0030 33 1 4.1784 4.7305 -2.8512 34 1 6.1800 -0.0856 -1.6465 35 1 4.0092 0.3701 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242366619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:42 Heat of formation + Delta-G solvation = -44.027985 kcal Electronic energy + Delta-G solvation = -22234.051367 eV Core-core repulsion = 18802.084383 eV Total energy + Delta-G solvation = -3431.966984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.39566 -38.53791 -36.42781 -35.96690 -35.80924 -33.58715 -31.15498 -29.77262 -29.27374 -28.09137 -26.22089 -25.19011 -22.50545 -21.94684 -20.92700 -19.85384 -17.82099 -17.61931 -16.21274 -16.04990 -15.45715 -15.10171 -14.85174 -14.81811 -14.65939 -13.95419 -13.70554 -13.16196 -12.82353 -12.55665 -12.31237 -11.96384 -11.80471 -11.62160 -11.36653 -11.21124 -11.12878 -10.95757 -10.91813 -10.62992 -10.48348 -10.08675 -9.97185 -9.61786 -9.59818 -9.15585 -8.21321 -8.01377 -7.50830 -6.94373 -6.68169 -4.40348 1.61003 1.68187 2.52702 2.75471 2.93125 3.09282 3.14326 3.21919 3.94211 4.06242 4.30190 4.58548 4.78115 5.25780 5.47697 5.57449 5.64321 5.68621 5.73266 5.79767 5.89072 6.04170 6.18384 6.32059 6.37698 6.58260 6.75908 6.81693 6.95657 7.06684 7.16753 7.27238 7.39865 7.66299 7.75179 7.94034 8.02825 8.34711 8.39919 8.73516 8.83614 8.89997 10.13419 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.011991 B = 0.006479 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.527515 B = 4320.645024 C = 5821.772481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.135 3.865 4 C -0.324 4.324 5 C -0.038 4.038 6 C -0.214 4.214 7 C 0.014 3.986 8 C -0.110 4.110 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.067 4.067 12 Cl -0.080 7.080 13 C 0.134 3.866 14 O -0.458 6.458 15 C 0.165 3.835 16 C -0.420 4.420 17 H 0.078 0.922 18 C 0.080 3.920 19 N -0.774 5.774 20 Si 0.905 3.095 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.196 4.196 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.378 0.622 34 H 0.282 0.718 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 7.295 0.984 8.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.091 3.909 4 C -0.343 4.343 5 C -0.056 4.056 6 C -0.216 4.216 7 C 0.013 3.987 8 C -0.129 4.129 9 C -0.142 4.142 10 C -0.144 4.144 11 C -0.094 4.094 12 Cl -0.051 7.051 13 C 0.087 3.913 14 O -0.265 6.265 15 C 0.162 3.838 16 C -0.448 4.448 17 H 0.096 0.904 18 C -0.140 4.140 19 N -0.398 5.398 20 Si 0.729 3.271 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.216 4.216 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.232 0.768 34 H 0.093 0.907 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.744 6.727 1.005 7.334 hybrid contribution 0.246 0.270 -0.374 0.523 sum -2.497 6.997 0.631 7.457 Atomic orbital electron populations 1.22748 0.80817 1.01823 1.00473 1.86008 1.19471 1.29199 1.89751 1.19004 0.92454 0.82420 0.97017 1.20281 0.97215 0.92441 1.24405 1.20257 0.92986 0.95211 0.97185 1.18247 0.91855 0.90369 1.21118 1.19118 0.93754 0.93881 0.91954 1.21382 1.00107 0.93539 0.97835 1.20879 0.98650 0.96854 0.97822 1.20767 1.01311 0.99401 0.92902 1.21372 1.01280 0.95223 0.91504 1.98323 1.71072 1.90739 1.44977 1.18432 0.96086 0.86649 0.90099 1.84993 1.52950 1.59330 1.29259 1.17121 0.92599 0.88606 0.85520 1.19413 0.90919 1.01858 1.32626 0.90371 1.25926 1.01193 0.94316 0.92572 1.69820 1.38467 1.10114 1.21388 0.86333 0.82056 0.79835 0.78885 1.19306 1.20097 1.18353 1.20572 0.89337 0.99232 1.12466 0.89964 0.93734 0.93696 0.88703 0.89141 0.85705 0.85888 0.85801 0.76761 0.90706 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.18 10.48 -19.36 -0.20 -7.38 16 3 C 0.13 3.20 6.67 -39.24 -0.26 2.94 16 4 C -0.32 -6.99 9.02 -39.24 -0.35 -7.35 16 5 C -0.04 -0.81 9.71 -39.33 -0.38 -1.19 16 6 C -0.21 -4.87 5.00 -104.23 -0.52 -5.39 16 7 C 0.01 0.28 4.39 -104.77 -0.46 -0.18 16 8 C -0.11 -1.91 9.74 -39.17 -0.38 -2.29 16 9 C -0.12 -1.83 10.03 -39.62 -0.40 -2.23 16 10 C -0.12 -1.91 9.82 -39.46 -0.39 -2.30 16 11 C -0.07 -1.17 6.33 -39.41 -0.25 -1.42 16 12 Cl -0.08 -1.28 28.50 -51.86 -1.48 -2.76 16 13 C 0.13 2.64 5.96 -38.72 -0.23 2.41 16 14 O -0.46 -9.40 11.47 -19.17 -0.22 -9.62 16 15 C 0.16 4.20 5.40 -106.57 -0.58 3.63 16 16 C -0.42 -10.83 7.32 -37.92 -0.28 -11.11 16 17 H 0.08 2.04 7.06 -52.49 -0.37 1.67 16 18 C 0.08 2.00 5.18 -17.32 -0.09 1.91 16 19 N -0.77 -19.81 10.87 55.55 0.60 -19.21 16 20 Si 0.90 19.13 29.59 -169.99 -5.03 14.10 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.20 -5.09 8.60 -38.80 -0.33 -5.43 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.66 7.64 -51.93 -0.40 0.26 16 27 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 28 H 0.09 1.80 6.25 -52.49 -0.33 1.48 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 33 H 0.38 6.26 9.06 45.56 0.41 6.67 16 34 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 35 H 0.13 3.52 6.14 -52.48 -0.32 3.19 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -28.56 317.66 -8.10 -36.66 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -2.65 Total: 9.84 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -3.91 Total: -26.41 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.60 Total: -19.21 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.42 Total: -17.01 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.48 Total: -2.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.56 -8.10 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242366619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.364 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds