Wall clock time and date at job start Tue Mar 31 2020 08:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76195 * 103.00111 * 2 1 4 4 C 1.39042 * 120.00280 * 359.97438 * 3 2 1 5 5 C 1.38378 * 120.15088 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.92196 * 180.02562 * 5 4 3 7 7 C 1.38322 * 120.15633 * 0.02562 * 5 4 3 8 8 C 1.39394 * 120.01085 * 359.95768 * 7 5 4 9 9 C 1.48293 * 120.07536 * 180.02562 * 8 7 5 10 10 C 1.39288 * 120.16045 * 130.00228 * 9 8 7 11 11 C 1.38009 * 119.94410 * 179.97438 * 10 9 8 12 12 C 1.38441 * 120.27368 * 0.02562 * 11 10 9 13 13 C 1.38107 * 120.32613 * 0.02562 * 12 11 10 14 14 C 1.38770 * 120.04157 * 359.69766 * 13 12 11 15 15 O 1.35664 * 120.12915 * 180.29763 * 14 13 12 16 16 C 1.34814 * 117.00768 * 354.40312 * 15 14 13 17 17 H 1.08002 * 119.99128 * 5.06334 * 16 15 14 18 18 C 1.38649 * 120.00288 * 185.06308 * 16 15 14 19 19 N 1.31553 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99669 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47023 * 90.00176 * 20 18 16 22 22 H 1.48498 * 109.46961 * 209.99835 * 20 18 16 23 23 H 1.48498 * 109.47167 * 330.00000 * 20 18 16 24 24 C 1.38750 * 120.00833 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47074 * 60.00432 * 1 2 3 26 26 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47367 * 300.00124 * 1 2 3 28 28 H 1.08003 * 119.92449 * 0.25851 * 4 3 2 29 29 H 1.08006 * 119.99479 * 179.97438 * 7 5 4 30 30 H 1.07998 * 120.02406 * 359.94687 * 10 9 8 31 31 H 1.08005 * 119.86429 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.84161 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.98065 * 180.02562 * 13 12 11 34 34 H 0.97001 * 119.99879 * 179.97438 * 19 18 16 35 35 H 1.08002 * 120.07415 * 0.03886 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1936 2.6651 -0.0005 5 6 1.5014 4.0142 0.0000 6 9 0.5097 4.9317 0.0000 7 6 2.8220 4.4256 0.0005 8 6 3.8467 3.4806 0.0014 9 6 5.2630 3.9201 0.0026 10 6 6.1600 3.3881 0.9259 11 6 7.4772 3.7999 0.9226 12 6 7.9120 4.7410 0.0050 13 6 7.0319 5.2766 -0.9147 14 6 5.7058 4.8678 -0.9271 15 8 4.8412 5.3883 -1.8337 16 6 5.3025 6.3822 -2.6191 17 1 6.3412 6.6735 -2.5671 18 6 4.4436 7.0303 -3.4936 19 7 3.1786 6.6751 -3.5572 20 14 5.0829 8.4079 -4.5812 21 1 5.5641 7.8410 -5.8666 22 1 3.9895 9.3772 -4.8463 23 1 6.2031 9.1007 -3.8955 24 6 3.5372 2.1226 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.1611 2.3481 0.0033 29 1 3.0593 5.4793 0.0005 30 1 5.8249 2.6544 1.6440 31 1 8.1716 3.3869 1.6394 32 1 8.9443 5.0586 0.0090 33 1 7.3771 6.0101 -1.6283 34 1 2.5776 7.1287 -4.1687 35 1 4.3281 1.3872 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587744.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:04 Heat of formation + Delta-G solvation = -24.604506 kcal Electronic energy + Delta-G solvation = -21655.229657 eV Core-core repulsion = 18238.521434 eV Total energy + Delta-G solvation = -3416.708223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.43693 -39.49397 -38.05361 -36.39296 -32.53379 -32.16398 -30.30031 -29.51564 -29.04896 -27.96707 -25.44534 -23.20429 -22.67926 -21.30211 -20.69265 -18.05211 -17.95009 -16.66358 -16.09141 -15.97360 -15.56652 -15.16326 -14.92553 -14.55981 -14.42466 -14.04338 -13.81368 -13.70456 -13.61482 -13.08611 -12.94910 -12.68163 -12.38471 -12.10528 -11.76924 -11.64279 -11.38789 -11.26735 -10.93970 -10.82161 -10.65761 -10.49853 -10.24537 -9.45511 -9.39569 -8.92001 -8.64478 -7.97195 -7.31783 -7.20970 -6.51838 -4.10919 1.28979 1.52576 1.55418 2.16489 2.30013 2.40638 3.09056 3.10023 3.14714 3.88167 3.92287 4.47771 4.72496 4.95903 4.97054 4.98106 5.02948 5.13335 5.27410 5.41626 5.56141 5.57506 5.71805 5.72701 5.87081 5.96586 6.20049 6.29339 6.37292 6.48495 6.60501 6.77885 6.81603 7.03999 7.08424 7.26670 7.27787 7.34325 7.70084 7.90901 8.92498 9.59072 10.64380 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.005223 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.474644 B = 5359.692664 C = 6895.640479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.119 6.119 3 C -0.064 4.064 4 C -0.182 4.182 5 C 0.121 3.879 6 F -0.140 7.140 7 C -0.115 4.115 8 C 0.039 3.961 9 C -0.145 4.145 10 C -0.054 4.054 11 C -0.216 4.216 12 C -0.065 4.065 13 C -0.233 4.233 14 C 0.167 3.833 15 O -0.163 6.163 16 C -0.397 4.397 17 H 0.093 0.907 18 C 0.043 3.957 19 N -0.852 5.852 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.106 4.106 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.271 0.729 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.390 -8.513 7.214 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.122 5.878 3 C -0.176 4.176 4 C -0.207 4.207 5 C 0.100 3.900 6 F -0.118 7.118 7 C -0.135 4.135 8 C 0.037 3.963 9 C -0.146 4.146 10 C -0.072 4.072 11 C -0.235 4.235 12 C -0.084 4.084 13 C -0.252 4.252 14 C 0.112 3.888 15 O -0.065 6.065 16 C -0.473 4.473 17 H 0.110 0.890 18 C -0.162 4.162 19 N -0.486 5.486 20 Si 0.764 3.236 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.130 4.130 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.159 0.841 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.274 -9.508 7.006 11.879 hybrid contribution -0.650 2.076 -0.728 2.294 sum -1.925 -7.432 6.278 9.917 Atomic orbital electron populations 1.23655 0.95131 1.06755 1.05813 1.85317 1.06067 1.03221 1.93156 1.21180 0.95896 0.95732 1.04793 1.20900 0.99079 0.91469 1.09217 1.17346 0.85106 0.85566 1.01962 1.91482 1.60475 1.65968 1.93892 1.21310 0.90006 1.01674 1.00556 1.18289 0.92150 0.91280 0.94583 1.17719 0.91915 1.04185 1.00820 1.20714 0.92634 0.97505 0.96340 1.20528 0.95781 1.03854 1.03310 1.20852 0.98236 0.95174 0.94101 1.21128 0.93512 1.06527 1.04027 1.19288 0.89508 0.91577 0.88435 1.83979 1.36113 1.45846 1.40539 1.21353 0.96420 1.11400 1.18092 0.88956 1.25283 0.95000 0.98407 0.97539 1.70041 1.03441 1.39808 1.35262 0.85729 0.78539 0.79586 0.79715 1.19837 1.20207 1.19140 1.20788 0.93906 0.95316 1.02972 0.89661 0.87605 0.89803 0.85371 0.84069 0.86675 0.87295 0.87310 0.85245 0.91878 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.15 101.05 0.92 -0.46 16 2 S -0.12 -1.56 22.56 -107.50 -2.43 -3.98 16 3 C -0.06 -1.04 6.11 -39.09 -0.24 -1.28 16 4 C -0.18 -3.05 9.34 -39.23 -0.37 -3.42 16 5 C 0.12 2.35 7.29 -39.50 -0.29 2.06 16 6 F -0.14 -2.75 17.26 2.25 0.04 -2.71 16 7 C -0.11 -2.41 8.76 -39.12 -0.34 -2.75 16 8 C 0.04 0.78 5.27 -104.94 -0.55 0.23 16 9 C -0.14 -2.97 5.48 -104.73 -0.57 -3.55 16 10 C -0.05 -0.94 9.50 -39.28 -0.37 -1.31 16 11 C -0.22 -3.56 10.03 -39.59 -0.40 -3.96 16 12 C -0.07 -1.14 10.03 -39.55 -0.40 -1.54 16 13 C -0.23 -4.85 9.16 -39.43 -0.36 -5.21 16 14 C 0.17 3.88 6.56 -38.74 -0.25 3.62 16 15 O -0.16 -4.39 8.12 0.36 0.00 -4.39 16 16 C -0.40 -10.64 9.49 30.88 0.29 -10.35 16 17 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 18 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 19 N -0.85 -24.27 13.67 55.48 0.76 -23.51 16 20 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.11 -1.88 9.25 -39.01 -0.36 -2.24 16 25 H 0.08 0.82 7.75 -51.92 -0.40 0.42 16 26 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.08 0.74 7.74 -51.93 -0.40 0.34 16 28 H 0.13 1.80 5.86 -52.48 -0.31 1.49 16 29 H 0.14 3.23 7.70 -52.48 -0.40 2.82 16 30 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 31 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.13 2.09 8.04 -52.49 -0.42 1.66 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -29.29 321.93 -8.51 -37.80 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.33 Total: 6.01 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -3.39 Total: -29.09 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.76 Total: -23.51 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: 0.00 Total: -4.39 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.43 Total: -3.98 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.29 -8.51 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587744.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.198 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds