Wall clock time and date at job start Tue Mar 31 2020 07:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38062 * 119.99042 * 2 1 4 4 F 1.35096 * 120.04541 * 0.02562 * 3 2 1 5 5 C 1.39683 * 119.90239 * 179.97438 * 3 2 1 6 6 C 1.48211 * 120.05727 * 180.02562 * 5 3 2 7 7 C 1.39319 * 120.16722 * 244.99982 * 6 5 3 8 8 C 1.38011 * 119.94413 * 179.75104 * 7 6 5 9 9 C 1.38447 * 120.27041 * 0.27621 * 8 7 6 10 10 C 1.38126 * 120.33366 * 0.02562 * 9 8 7 11 11 C 1.38735 * 120.05294 * 359.94824 * 10 9 8 12 12 O 1.35681 * 120.13792 * 180.02562 * 11 10 9 13 13 C 1.34815 * 116.99576 * 354.41013 * 12 11 10 14 14 H 1.07992 * 120.00102 * 5.06404 * 13 12 11 15 15 C 1.38632 * 119.99520 * 185.07153 * 13 12 11 16 16 N 1.31571 * 119.99945 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00153 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47042 * 89.99588 * 17 15 13 19 19 H 1.48492 * 109.47291 * 210.00009 * 17 15 13 20 20 H 1.48500 * 109.47092 * 330.00251 * 17 15 13 21 21 C 1.39473 * 119.88297 * 0.28139 * 5 3 2 22 22 C 1.37793 * 119.97759 * 359.41878 * 21 5 3 23 23 C 1.39032 * 119.98908 * 179.97438 * 2 1 3 24 24 S 1.76205 * 119.93964 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.46783 * 90.00219 * 1 2 3 26 26 H 1.09008 * 109.47059 * 209.99822 * 1 2 3 27 27 H 1.09003 * 109.47245 * 329.99976 * 1 2 3 28 28 H 1.08001 * 120.02565 * 0.03443 * 7 6 5 29 29 H 1.07995 * 119.86228 * 180.26279 * 8 7 6 30 30 H 1.07994 * 119.83308 * 179.97438 * 9 8 7 31 31 H 1.08001 * 119.97509 * 179.97438 * 10 9 8 32 32 H 0.97000 * 119.99859 * 180.02562 * 16 15 13 33 33 H 1.08007 * 120.01026 * 179.70084 * 21 5 3 34 34 H 1.07998 * 119.95348 * 180.27741 * 22 21 5 35 35 H 1.34503 * 102.99808 * 90.00070 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1958 0.0000 4 9 1.5223 2.3661 0.0005 5 6 3.5939 1.1936 0.0005 6 6 4.3382 2.4753 0.0011 7 6 5.1304 2.8253 -1.0901 8 6 5.8175 4.0223 -1.0869 9 6 5.7276 4.8756 -0.0004 10 6 4.9505 4.5370 1.0901 11 6 4.2536 3.3374 1.1011 12 8 3.4893 3.0034 2.1712 13 6 3.5400 3.8241 3.2395 14 1 4.1045 4.7433 3.1880 15 6 2.8675 3.4880 4.4043 16 7 2.9172 4.2887 5.4471 17 14 1.8906 1.8982 4.4932 18 1 2.7691 0.8040 4.9791 19 1 0.7500 2.0697 5.4284 20 1 1.3762 1.5571 3.1425 21 6 4.2870 -0.0167 -0.0049 22 6 3.5933 -1.2073 0.0014 23 6 2.2019 -1.2042 0.0005 24 16 1.3190 -2.7291 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 5.2032 2.1626 -1.9398 29 1 6.4278 4.2942 -1.9354 30 1 6.2686 5.8103 -0.0052 31 1 4.8849 5.2069 1.9348 32 1 2.4470 4.0533 6.2622 33 1 5.3670 -0.0208 -0.0093 34 1 4.1304 -2.1443 0.0017 35 1 1.1679 -2.9912 -1.3100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:33 Heat of formation + Delta-G solvation = -19.074733 kcal Electronic energy + Delta-G solvation = -22375.402197 eV Core-core repulsion = 18958.933762 eV Total energy + Delta-G solvation = -3416.468434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.42327 -39.59997 -38.53034 -36.60575 -33.32133 -32.45316 -31.51523 -29.47367 -28.54299 -26.89536 -25.33711 -23.48274 -21.95458 -21.21083 -20.67289 -18.24578 -17.94114 -17.45313 -16.67117 -16.31050 -15.69570 -15.37545 -14.82606 -14.74709 -14.21683 -13.92073 -13.79220 -13.56230 -13.44140 -13.06003 -12.99610 -12.48966 -12.44673 -12.25868 -12.09926 -11.68756 -11.48645 -11.30260 -10.95123 -10.85691 -10.83596 -10.57835 -10.18688 -9.48945 -8.94188 -8.80354 -8.48440 -8.17143 -8.13352 -7.44038 -6.48285 -4.14477 0.81547 1.33925 1.60290 1.92524 2.18003 2.71765 3.20573 3.25258 3.40982 3.62937 4.20724 4.32640 4.54105 4.70330 4.81711 4.90211 4.98914 5.05636 5.33972 5.47228 5.54907 5.62917 5.67381 5.70104 5.88337 6.03109 6.10170 6.20190 6.26210 6.27511 6.42459 6.43890 6.62730 6.89164 6.97364 7.09489 7.18430 7.49457 7.69883 7.95009 8.86626 9.46479 10.58554 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.007152 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.738336 B = 3914.009458 C = 5547.829245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C 0.112 3.888 4 F -0.122 7.122 5 C -0.007 4.007 6 C -0.151 4.151 7 C -0.054 4.054 8 C -0.209 4.209 9 C -0.065 4.065 10 C -0.221 4.221 11 C 0.181 3.819 12 O -0.202 6.202 13 C -0.390 4.390 14 H 0.108 0.892 15 C 0.069 3.931 16 N -0.874 5.874 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.255 1.255 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.101 4.101 24 S -0.122 6.122 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.281 0.719 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 -9.311 -12.330 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.080 4.080 3 C 0.091 3.909 4 F -0.101 7.101 5 C -0.008 4.008 6 C -0.152 4.152 7 C -0.072 4.072 8 C -0.228 4.228 9 C -0.083 4.083 10 C -0.240 4.240 11 C 0.127 3.873 12 O -0.105 6.105 13 C -0.465 4.465 14 H 0.125 0.875 15 C -0.135 4.135 16 N -0.511 5.511 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.179 1.179 21 C -0.120 4.120 22 C -0.101 4.101 23 C -0.213 4.213 24 S 0.036 5.964 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.154 0.846 32 H 0.091 0.909 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.517 -10.218 -11.795 15.614 hybrid contribution 0.019 0.624 -0.695 0.934 sum -0.498 -9.594 -12.490 15.757 Atomic orbital electron populations 1.20941 0.89636 1.04687 1.02760 1.20098 0.97295 0.90952 0.99705 1.17505 0.89331 0.81038 1.03066 1.91515 1.79717 1.45408 1.93423 1.18898 0.90766 0.94098 0.97063 1.17622 1.06675 0.94666 0.96281 1.20648 0.94671 0.96280 0.95605 1.20570 1.05918 0.96510 0.99804 1.20910 0.96384 0.98178 0.92839 1.21239 1.03145 0.98536 1.01039 1.19019 0.89157 0.91783 0.87355 1.83577 1.55909 1.49353 1.21673 1.20768 1.33858 1.03350 0.88534 0.87465 1.24427 0.96728 0.98746 0.93606 1.69644 1.41554 1.36866 1.02992 0.86299 0.79782 0.82379 0.79448 1.19672 1.20550 1.17886 1.21134 1.00331 0.90212 1.00276 1.21422 0.92326 0.98649 0.97730 1.20800 0.95378 0.93892 1.11277 1.85841 1.74742 1.24559 1.11301 0.91014 0.89096 0.90722 0.86691 0.87074 0.86960 0.84571 0.90910 0.84377 0.84478 0.96435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.39 36.00 0.34 -1.41 16 2 C -0.08 -1.28 5.90 -104.39 -0.62 -1.90 16 3 C 0.11 2.15 6.91 -39.11 -0.27 1.88 16 4 F -0.12 -2.59 15.88 2.25 0.04 -2.55 16 5 C -0.01 -0.13 4.95 -104.80 -0.52 -0.65 16 6 C -0.15 -2.97 5.01 -104.73 -0.52 -3.50 16 7 C -0.05 -0.90 9.73 -39.26 -0.38 -1.28 16 8 C -0.21 -3.35 10.03 -39.59 -0.40 -3.74 16 9 C -0.06 -1.13 10.03 -39.55 -0.40 -1.53 16 10 C -0.22 -4.65 9.16 -39.44 -0.36 -5.01 16 11 C 0.18 4.13 6.46 -38.73 -0.25 3.88 16 12 O -0.20 -5.25 7.81 0.30 0.00 -5.25 16 13 C -0.39 -10.85 9.95 30.88 0.31 -10.54 16 14 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 15 C 0.07 1.94 5.49 -17.52 -0.10 1.84 16 16 N -0.87 -25.04 13.96 55.48 0.77 -24.27 16 17 Si 0.90 22.00 28.62 -169.99 -4.86 17.14 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.10 -1.53 9.72 -39.28 -0.38 -1.91 16 22 C -0.08 -1.12 9.77 -39.41 -0.39 -1.50 16 23 C -0.10 -1.51 6.12 -38.95 -0.24 -1.75 16 24 S -0.12 -1.50 23.96 -107.50 -2.58 -4.08 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 1.17 6.77 -51.92 -0.35 0.82 16 27 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 28 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.14 3.00 5.64 -52.49 -0.30 2.70 16 32 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.07 0.76 9.07 97.61 0.89 1.65 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -29.53 321.46 -8.07 -37.60 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.12 Total: 3.70 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -4.17 Total: -27.13 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.77 Total: -24.27 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.86 Total: 17.14 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.58 Total: -4.08 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.53 -8.07 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.523 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds