Wall clock time and date at job start Tue Mar 31 2020 09:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48499 * 109.46860 * 274.96372 * 3 2 1 5 5 H 1.48503 * 109.46998 * 34.96352 * 3 2 1 6 6 H 1.48497 * 109.46745 * 154.96442 * 3 2 1 7 7 C 1.39928 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99914 * 196.79611 * 7 2 1 9 9 C 1.41416 * 120.00030 * 16.78857 * 7 2 1 10 10 C 1.40775 * 120.20670 * 25.17367 * 9 7 2 11 11 C 1.37649 * 119.88689 * 179.97438 * 10 9 7 12 12 C 1.38517 * 120.32694 * 359.97438 * 11 10 9 13 13 C 1.39275 * 120.42824 * 359.97438 * 12 11 10 14 14 N 1.39846 * 119.95254 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99850 * 145.78216 * 14 13 12 16 16 O 1.21557 * 120.00345 * 354.89484 * 15 14 13 17 17 C 1.47823 * 119.99887 * 174.89317 * 15 14 13 18 18 C 1.40132 * 120.96118 * 269.99856 * 17 15 14 19 19 F 1.35101 * 120.52112 * 0.28126 * 18 17 15 20 20 C 1.38427 * 118.95477 * 179.97438 * 18 17 15 21 21 N 1.31767 * 120.93311 * 0.02809 * 20 18 17 22 22 C 1.31772 * 122.14741 * 359.97399 * 21 20 18 23 23 C 1.38427 * 120.92570 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.51901 * 179.97438 * 23 22 21 25 25 C 1.38309 * 120.09489 * 0.27882 * 13 12 11 26 26 H 0.97002 * 120.00235 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.06076 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.83646 * 179.97438 * 11 10 9 29 29 H 1.07997 * 119.79032 * 180.02562 * 12 11 10 30 30 H 0.97003 * 120.00392 * 325.78513 * 14 13 12 31 31 H 1.08004 * 119.52657 * 180.02562 * 20 18 17 32 32 H 1.07993 * 119.53795 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.15772 * 179.72443 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3848 2.1070 -1.3948 5 1 1.4961 2.6201 0.8023 6 1 3.5883 1.4121 0.5925 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2697 9 6 1.3462 -2.4102 -0.3548 10 6 0.2109 -2.3732 -1.1864 11 6 -0.4279 -3.5438 -1.5276 12 6 0.0410 -4.7593 -1.0570 13 6 1.1636 -4.8115 -0.2343 14 7 1.6281 -6.0441 0.2355 15 6 2.9500 -6.2461 0.4043 16 8 3.7441 -5.3921 0.0614 17 6 3.4341 -7.5063 1.0066 18 6 3.6068 -7.6234 2.3923 19 9 3.3275 -6.5839 3.2088 20 6 4.0618 -8.8230 2.9119 21 7 4.3314 -9.8439 2.1236 22 6 4.1836 -9.7780 0.8158 23 6 3.7336 -8.6184 0.2082 24 9 3.5855 -8.5598 -1.1334 25 6 1.8159 -3.6457 0.1237 26 1 -0.4850 0.8400 0.0004 27 1 -0.1578 -1.4281 -1.5569 28 1 -1.2991 -3.5144 -2.1653 29 1 -0.4666 -5.6724 -1.3304 30 1 0.9991 -6.7536 0.4399 31 1 4.1978 -8.9236 3.9786 32 1 4.4175 -10.6405 0.2095 33 1 2.6839 -3.6847 0.7652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362695399.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:25 Heat of formation + Delta-G solvation = -60.475307 kcal Electronic energy + Delta-G solvation = -23491.121600 eV Core-core repulsion = 19538.937478 eV Total energy + Delta-G solvation = -3952.184123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.076 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.44611 -49.39290 -40.60234 -39.52222 -37.25694 -34.62708 -33.32127 -32.71038 -31.17758 -29.88921 -28.38210 -25.51653 -25.24467 -23.95984 -22.03725 -20.99046 -20.12602 -18.58470 -18.49843 -18.21522 -17.58079 -16.64105 -16.26690 -16.01555 -15.71814 -15.63920 -15.20628 -14.70632 -14.51757 -14.37191 -14.08039 -13.84998 -13.58137 -13.15276 -12.93424 -12.52081 -12.19576 -11.72973 -11.28799 -11.16897 -11.04483 -10.70138 -10.49086 -10.37070 -10.09667 -9.76504 -9.60183 -9.39090 -9.17654 -9.11854 -7.51742 -7.03788 -6.76237 -4.38441 0.20420 0.25601 2.20519 2.76843 2.87778 3.00777 3.08206 3.12692 3.14080 3.21468 3.26948 3.58633 3.85368 3.94209 4.26882 4.35238 4.55678 4.60433 5.03086 5.09357 5.28822 5.65300 5.97618 6.17030 6.31755 6.54414 6.86540 6.96142 7.00449 7.12412 7.19543 7.41382 7.61742 7.86712 7.99045 8.04195 8.11725 8.40530 8.62199 8.88229 8.92095 10.17680 Molecular weight = 304.08amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.003709 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.379090 B = 7546.444398 C = 8153.615174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.167 4.167 11 C -0.091 4.091 12 C -0.257 4.257 13 C 0.145 3.855 14 N -0.648 5.648 15 C 0.553 3.447 16 O -0.488 6.488 17 C -0.149 4.149 18 C 0.116 3.884 19 F -0.106 7.106 20 C 0.066 3.934 21 N -0.421 5.421 22 C 0.065 3.935 23 C 0.113 3.887 24 F -0.109 7.109 25 C -0.209 4.209 26 H 0.281 0.719 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.401 0.599 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -15.937 3.591 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.187 4.187 11 C -0.111 4.111 12 C -0.278 4.278 13 C 0.054 3.946 14 N -0.291 5.291 15 C 0.336 3.664 16 O -0.360 6.360 17 C -0.162 4.162 18 C 0.094 3.906 19 F -0.084 7.084 20 C -0.093 4.093 21 N -0.128 5.128 22 C -0.094 4.094 23 C 0.091 3.909 24 F -0.087 7.087 25 C -0.231 4.231 26 H 0.091 0.909 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.235 0.765 31 H 0.200 0.800 32 H 0.200 0.800 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.297 -15.876 3.731 16.865 hybrid contribution -0.411 1.362 -0.337 1.462 sum 3.886 -14.514 3.394 15.404 Atomic orbital electron populations 1.69824 1.07552 1.29213 1.35333 1.25909 0.94753 1.01335 0.92164 0.86271 0.80659 0.80489 0.79179 1.19282 1.20253 1.18498 1.19617 0.97857 0.90919 1.40301 0.90249 1.17479 0.90921 0.91533 0.88358 1.21383 0.99175 0.96945 1.01204 1.20469 0.98572 0.92582 0.99428 1.20027 1.02090 0.97079 1.08601 1.17416 0.96575 0.82698 0.97862 1.43317 1.05971 1.15616 1.64244 1.17614 0.83525 0.85310 0.79916 1.90915 1.54588 1.43159 1.47366 1.20806 1.05504 0.96423 0.93452 1.18668 0.99142 0.86607 0.86233 1.91650 1.90368 1.55617 1.70767 1.23017 0.97812 0.86654 1.01803 1.67638 1.11948 1.28845 1.04327 1.22998 0.98375 0.96618 0.91367 1.18656 0.99904 0.93853 0.78523 1.91627 1.92618 1.96559 1.27875 1.20969 1.04331 0.91002 1.06751 0.90861 0.86152 0.88810 0.89116 0.76484 0.79969 0.80036 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.54 10.94 55.55 0.61 -19.93 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.56 9.05 -37.74 -0.34 -12.90 16 8 H 0.08 2.16 7.90 -52.49 -0.41 1.74 16 9 C 0.12 3.31 5.57 -106.85 -0.59 2.71 16 10 C -0.17 -4.37 8.69 -38.84 -0.34 -4.71 16 11 C -0.09 -2.12 10.01 -39.69 -0.40 -2.52 16 12 C -0.26 -5.63 9.97 -39.09 -0.39 -6.02 16 13 C 0.15 3.32 6.25 -83.79 -0.52 2.80 16 14 N -0.65 -11.92 5.33 -10.77 -0.06 -11.98 16 15 C 0.55 10.35 6.46 -12.34 -0.08 10.27 16 16 O -0.49 -11.31 14.86 5.32 0.08 -11.23 16 17 C -0.15 -2.08 5.68 -104.55 -0.59 -2.68 16 18 C 0.12 1.40 7.34 -38.80 -0.28 1.12 16 19 F -0.11 -1.47 16.92 2.25 0.04 -1.43 16 20 C 0.07 0.60 11.16 -17.51 -0.20 0.40 16 21 N -0.42 -3.94 10.32 -13.19 -0.14 -4.08 16 22 C 0.07 0.57 11.16 -17.51 -0.20 0.38 16 23 C 0.11 1.32 7.34 -38.80 -0.28 1.03 16 24 F -0.11 -1.40 16.92 2.25 0.04 -1.36 16 25 C -0.21 -5.46 8.39 -38.68 -0.32 -5.79 16 26 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 27 H 0.12 3.21 6.17 -52.48 -0.32 2.89 16 28 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.40 5.79 8.81 -40.82 -0.36 5.43 16 31 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.11 2.83 6.48 -52.48 -0.34 2.49 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -31.33 308.30 -6.71 -38.04 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -2.26 Total: 7.36 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -4.63 Total: -14.05 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.41 Total: -36.00 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.33 -6.71 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362695399.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.436 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds