Wall clock time and date at job start Tue Mar 31 2020 09:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48505 * 109.47068 * 274.98916 * 3 2 1 5 5 H 1.48497 * 109.47192 * 34.98677 * 3 2 1 6 6 H 1.48499 * 109.47133 * 154.98983 * 3 2 1 7 7 C 1.39910 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00073 * 147.60327 * 7 2 1 9 9 C 1.41133 * 119.99993 * 327.59727 * 7 2 1 10 10 C 1.40885 * 120.16393 * 157.89181 * 9 7 2 11 11 C 1.36358 * 119.82993 * 180.02562 * 10 9 7 12 12 C 1.39509 * 120.16890 * 0.02562 * 11 10 9 13 13 N 1.39116 * 119.83710 * 179.97438 * 12 11 10 14 14 C 1.34787 * 119.99602 * 37.85807 * 13 12 11 15 15 O 1.21557 * 119.99753 * 356.68041 * 14 13 12 16 16 C 1.47793 * 119.99643 * 176.68694 * 14 13 12 17 17 C 1.40155 * 120.96340 * 269.99128 * 16 14 13 18 18 F 1.35098 * 120.51697 * 0.02562 * 17 16 14 19 19 C 1.38415 * 118.95968 * 179.97438 * 17 16 14 20 20 N 1.31782 * 120.93076 * 0.02562 * 19 17 16 21 21 C 1.31774 * 122.14318 * 0.02562 * 20 19 17 22 22 C 1.38409 * 120.93994 * 359.97438 * 21 20 19 23 23 F 1.35098 * 120.52862 * 180.02562 * 22 21 20 24 24 C 1.39519 * 120.32667 * 0.23753 * 12 11 10 25 25 C 1.36355 * 120.16729 * 359.47429 * 24 12 11 26 26 H 0.97005 * 120.00728 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.07859 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.91083 * 180.02562 * 11 10 9 29 29 H 0.97000 * 120.00737 * 217.85053 * 13 12 11 30 30 H 1.07993 * 119.53368 * 179.72072 * 19 17 16 31 31 H 1.08007 * 119.52668 * 180.02562 * 21 20 19 32 32 H 1.07999 * 119.91248 * 179.74775 * 24 12 11 33 33 H 1.07994 * 120.08845 * 180.23495 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3846 2.1074 -1.3948 5 1 1.4967 2.6200 0.8028 6 1 3.5889 1.4121 0.5919 7 6 2.0082 -1.2116 -0.0005 8 1 2.9622 -1.2841 -0.5017 9 6 1.4674 -2.3390 0.6539 10 6 1.8847 -3.6352 0.2924 11 6 1.3574 -4.7197 0.9289 12 6 0.4065 -4.5483 1.9353 13 7 -0.1273 -5.6596 2.5797 14 6 0.6583 -6.7187 2.8588 15 8 1.8178 -6.7281 2.4942 16 6 0.1097 -7.8685 3.6081 17 6 0.1714 -7.9128 5.0075 18 9 0.7357 -6.9005 5.7018 19 6 -0.3557 -9.0096 5.6672 20 7 -0.9084 -10.0013 4.9981 21 6 -0.9870 -10.0016 3.6827 22 6 -0.4863 -8.9466 2.9396 23 9 -0.5718 -8.9553 1.5914 24 6 -0.0156 -3.2680 2.2949 25 6 0.5071 -2.1738 1.6715 26 1 -0.4851 0.8400 -0.0004 27 1 2.6204 -3.7694 -0.4867 28 1 1.6766 -5.7139 0.6531 29 1 -1.0649 -5.6723 2.8282 30 1 -0.3091 -9.0555 6.7451 31 1 -1.4493 -10.8366 3.1772 32 1 -0.7550 -3.1433 3.0721 33 1 0.1822 -1.1833 1.9535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433592625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:30 Heat of formation + Delta-G solvation = -79.885373 kcal Electronic energy + Delta-G solvation = -23293.316745 eV Core-core repulsion = 19340.290939 eV Total energy + Delta-G solvation = -3953.025806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 304.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.37659 -50.34774 -41.71858 -40.74288 -39.12077 -36.37348 -35.02178 -33.81120 -31.96669 -31.55874 -30.94612 -27.50869 -25.92213 -24.78656 -23.64018 -22.78406 -21.78814 -19.71351 -19.41675 -19.34409 -19.15903 -18.29452 -17.44186 -17.18458 -17.08171 -16.99028 -16.66957 -16.07683 -15.88768 -15.77286 -15.03515 -14.96772 -14.85745 -14.49657 -14.38072 -14.06431 -13.89040 -13.52696 -13.28708 -12.88909 -12.76618 -12.42398 -12.04882 -11.71460 -11.62806 -11.22224 -11.14313 -10.89639 -10.62892 -10.17880 -9.56971 -9.13246 -8.80697 -6.30573 -0.71337 -0.52361 0.62720 1.06562 1.20504 1.37928 1.48057 1.57529 1.88407 2.13305 2.17443 2.33889 2.56994 2.73527 3.12552 3.25465 3.44036 3.63154 3.70099 4.19909 4.24308 4.31362 4.39308 4.59330 4.80352 5.00582 5.04557 5.17212 5.21156 5.31253 5.55805 5.74007 5.88910 5.99172 6.26067 6.36187 6.39699 6.54099 6.82012 6.85847 7.05799 8.14759 Molecular weight = 304.08amu Principal moments of inertia in cm(-1) A = 0.032361 B = 0.003151 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.044586 B = 8884.975266 C = 9213.293060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.052 3.948 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.246 4.246 11 C -0.072 4.072 12 C -0.026 4.026 13 N -0.621 5.621 14 C 0.546 3.454 15 O -0.554 6.554 16 C -0.163 4.163 17 C 0.102 3.898 18 F -0.121 7.121 19 C 0.092 3.908 20 N -0.422 5.422 21 C 0.092 3.908 22 C 0.101 3.899 23 F -0.121 7.121 24 C -0.091 4.091 25 C -0.189 4.189 26 H 0.297 0.703 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.416 0.584 30 H 0.220 0.780 31 H 0.220 0.780 32 H 0.124 0.876 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 -14.009 10.370 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.168 4.168 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.526 4.526 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.266 4.266 11 C -0.092 4.092 12 C -0.118 4.118 13 N -0.264 5.264 14 C 0.332 3.668 15 O -0.432 6.432 16 C -0.176 4.176 17 C 0.079 3.921 18 F -0.099 7.099 19 C -0.067 4.067 20 N -0.128 5.128 21 C -0.067 4.067 22 C 0.079 3.921 23 F -0.099 7.099 24 C -0.111 4.111 25 C -0.209 4.209 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.253 0.747 30 H 0.236 0.764 31 H 0.236 0.764 32 H 0.142 0.858 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.442 -14.550 10.533 19.083 hybrid contribution 0.589 1.822 -0.980 2.151 sum -5.853 -12.727 9.554 16.956 Atomic orbital electron populations 1.69923 1.09418 1.31742 1.30477 1.26763 0.95107 1.04538 0.90400 0.85334 0.79615 0.75938 0.79763 1.18310 1.18356 1.18528 1.19767 1.05773 0.95191 1.31860 0.90414 1.17925 0.90479 0.92339 0.90684 1.20712 1.07988 0.92643 1.05207 1.20384 0.96867 0.97548 0.94407 1.17068 1.07097 0.85840 1.01822 1.42712 1.12870 1.14551 1.56252 1.18225 0.85622 0.83085 0.79903 1.90814 1.18612 1.80254 1.53551 1.20587 1.04992 0.97512 0.94499 1.18861 0.97649 0.88596 0.86951 1.91599 1.82145 1.58106 1.78073 1.23541 0.93644 0.86174 1.03300 1.67834 1.12345 1.24581 1.08085 1.23542 0.96926 0.96897 0.89305 1.18865 0.99674 0.95249 0.78357 1.91598 1.93733 1.96269 1.28307 1.20415 1.00455 0.90665 0.99569 1.20660 1.03267 0.97173 0.99808 0.89231 0.88686 0.88349 0.74725 0.76407 0.76401 0.85773 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.62 11.78 21.82 0.26 -39.36 16 2 C 0.05 2.57 4.77 85.24 0.41 2.98 16 3 Si 0.97 36.76 29.66 68.60 2.03 38.80 16 4 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 5 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -26.99 8.94 23.39 0.21 -26.78 16 8 H 0.08 4.12 8.02 -2.91 -0.02 4.10 16 9 C 0.09 4.88 5.57 -21.27 -0.12 4.76 16 10 C -0.25 -13.13 9.74 22.48 0.22 -12.91 16 11 C -0.07 -3.64 8.59 22.14 0.19 -3.45 16 12 C -0.03 -1.17 6.25 38.60 0.24 -0.93 16 13 N -0.62 -22.62 5.29 -305.74 -1.62 -24.23 16 14 C 0.55 20.23 6.54 86.77 0.57 20.80 16 15 O -0.55 -25.65 14.72 -3.90 -0.06 -25.70 16 16 C -0.16 -4.37 5.68 -19.82 -0.11 -4.48 16 17 C 0.10 2.22 7.34 22.78 0.17 2.39 16 18 F -0.12 -3.10 16.92 44.97 0.76 -2.34 16 19 C 0.09 1.31 11.16 84.74 0.95 2.26 16 20 N -0.42 -6.18 10.33 -195.64 -2.02 -8.20 16 21 C 0.09 1.30 11.16 84.74 0.95 2.25 16 22 C 0.10 2.18 7.34 22.78 0.17 2.35 16 23 F -0.12 -3.04 16.92 44.97 0.76 -2.28 16 24 C -0.09 -4.15 9.90 22.14 0.22 -3.93 16 25 C -0.19 -9.80 8.74 22.48 0.20 -9.60 16 26 H 0.30 13.08 8.30 -92.70 -0.77 12.31 16 27 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 28 H 0.10 4.96 6.45 -2.91 -0.02 4.94 16 29 H 0.42 11.84 8.81 -92.71 -0.82 11.02 16 30 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.10 5.34 6.53 -2.91 -0.02 5.32 16 Total: -1.00 -68.59 308.98 4.74 -63.85 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.38 Total: 23.77 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 4.24 Total: -24.31 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -3.38 Total: -71.80 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.52 Total: -4.62 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.80 kcal Total: -68.59 4.74 -63.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433592625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.038 kcal (2) G-P(sol) polarization free energy of solvation -68.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds