Wall clock time and date at job start Tue Mar 31 2020 08:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47557 * 2 1 4 4 C 1.50698 * 109.46826 * 120.00227 * 2 1 3 5 5 H 1.08007 * 120.00134 * 120.00337 * 4 2 1 6 6 C 1.37881 * 120.00383 * 299.99460 * 4 2 1 7 7 N 1.31509 * 119.99601 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00385 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46727 * 60.00279 * 8 6 4 10 10 H 1.48492 * 109.47257 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47200 * 300.00704 * 8 6 4 12 12 O 1.45204 * 109.47114 * 239.99867 * 2 1 3 13 13 C 1.34770 * 116.99535 * 90.00148 * 12 2 1 14 14 O 1.21514 * 120.00323 * 359.97438 * 13 12 2 15 15 C 1.47306 * 119.99461 * 180.02562 * 13 12 2 16 16 C 1.39876 * 120.11795 * 359.97438 * 15 13 12 17 17 C 1.37586 * 119.92886 * 179.75033 * 16 15 13 18 18 C 1.39121 * 120.16582 * 0.25527 * 17 16 15 19 19 O 1.35694 * 119.88057 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00053 * 180.02562 * 19 18 17 21 21 F 1.39897 * 109.47203 * 299.99994 * 20 19 18 22 22 F 1.39901 * 109.47116 * 59.99944 * 20 19 18 23 23 C 1.38841 * 120.23563 * 359.97438 * 18 17 16 24 24 C 1.38044 * 120.06873 * 0.03653 * 23 18 17 25 25 F 1.35104 * 120.08570 * 179.97438 * 24 23 18 26 26 H 1.09005 * 109.47349 * 60.00001 * 1 2 3 27 27 H 1.08997 * 109.47557 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47515 * 299.99669 * 1 2 3 29 29 H 0.96994 * 120.00196 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.03821 * 0.03410 * 16 15 13 31 31 H 1.07995 * 119.91523 * 180.28421 * 17 16 15 32 32 H 1.08998 * 109.47161 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.97079 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1197 4.0080 9 1 3.8074 -1.1191 4.0077 10 1 1.8269 -0.4201 5.2204 11 1 1.8279 -2.5199 4.0081 12 8 2.0140 -0.6845 -1.1856 13 6 2.2179 0.0670 -2.2855 14 8 1.9969 1.2615 -2.2548 15 6 2.7077 -0.5598 -3.5253 16 6 2.9624 -1.9346 -3.5635 17 6 3.4149 -2.5169 -4.7250 18 6 3.6249 -1.7408 -5.8604 19 8 4.0708 -2.3212 -7.0030 20 6 4.2658 -1.4665 -8.1315 21 9 3.0534 -0.8554 -8.4687 22 9 5.2108 -0.4846 -7.8151 23 6 3.3789 -0.3747 -5.8287 24 6 2.9249 0.2196 -4.6684 25 9 2.6859 1.5490 -4.6372 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7082 1.1608 3.4844 30 1 2.7997 -2.5393 -2.6835 31 1 3.6071 -3.5792 -4.7556 32 1 4.6233 -2.0556 -8.9760 33 1 3.5430 0.2236 -6.7128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650441563.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:18 Heat of formation + Delta-G solvation = -249.927131 kcal Electronic energy + Delta-G solvation = -24481.716044 eV Core-core repulsion = 20058.254698 eV Total energy + Delta-G solvation = -4423.461346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.075 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.80335 -48.89419 -47.78221 -40.37450 -39.38342 -37.40982 -35.64810 -33.27875 -31.22498 -30.78819 -29.42970 -26.80488 -25.33132 -24.02813 -23.19027 -21.66503 -19.97546 -19.56355 -18.82412 -18.36365 -17.49386 -17.04760 -16.65723 -16.02039 -15.87155 -15.63623 -15.40336 -14.91616 -14.74209 -14.72448 -14.35462 -14.24870 -14.08298 -13.85015 -13.55619 -13.00779 -12.71143 -12.42176 -12.28568 -11.93278 -11.68847 -11.52505 -11.22885 -11.06106 -10.85353 -10.40384 -10.28968 -9.75788 -9.56058 -9.22245 -8.93129 -8.73658 -8.49443 -6.18838 -4.26270 0.53254 0.92516 2.02818 2.78788 3.00049 3.26185 3.28808 3.31119 3.48671 3.66970 3.76475 4.01639 4.15963 4.31938 4.41940 4.54569 4.83162 5.13721 5.18736 5.22677 5.58563 5.78042 5.95353 6.03126 6.15829 6.60064 6.65200 6.88784 6.90549 7.11984 7.57560 7.71287 7.90764 8.11884 8.57358 8.84496 9.38971 10.88657 Molecular weight = 304.08amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.003197 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.381092 B = 8754.988103 C = 9213.166594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.350 6.350 13 C 0.496 3.504 14 O -0.505 6.505 15 C -0.174 4.174 16 C 0.002 3.998 17 C -0.159 4.159 18 C 0.158 3.842 19 O -0.313 6.313 20 C 0.410 3.590 21 F -0.196 7.196 22 F -0.196 7.196 23 C -0.248 4.248 24 C 0.199 3.801 25 F -0.107 7.107 26 H 0.016 0.984 27 H 0.037 0.963 28 H 0.100 0.900 29 H 0.267 0.733 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.186 0.814 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -7.922 -21.270 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.266 6.266 13 C 0.340 3.660 14 O -0.395 6.395 15 C -0.177 4.177 16 C -0.016 4.016 17 C -0.178 4.178 18 C 0.114 3.886 19 O -0.230 6.230 20 C 0.320 3.680 21 F -0.177 7.177 22 F -0.177 7.177 23 C -0.268 4.268 24 C 0.179 3.821 25 F -0.085 7.085 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.181 0.819 31 H 0.167 0.833 32 H 0.202 0.798 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.236 -7.536 -21.087 23.245 hybrid contribution 0.135 0.387 0.692 0.804 sum 6.372 -7.149 -20.395 22.532 Atomic orbital electron populations 1.22171 0.97441 1.00182 1.01509 1.20689 0.91458 0.94042 0.77378 0.93415 1.20972 1.32696 1.13570 0.88794 0.91264 1.24891 0.94907 0.95091 0.99076 1.69887 1.35893 1.22504 1.24347 0.86310 0.79218 0.79501 0.80962 1.19959 1.21044 1.19912 1.86524 1.76010 1.43098 1.20985 1.20533 0.75666 0.85341 0.84492 1.90845 1.48192 1.15862 1.84609 1.19563 1.10328 0.94925 0.92846 1.21350 0.89897 0.92537 0.97821 1.20476 1.06112 1.01044 0.90127 1.18766 0.93316 0.90725 0.85766 1.86621 1.80461 1.37097 1.18817 1.23444 0.74735 0.80772 0.89057 1.93123 1.47440 1.84908 1.92267 1.93126 1.65208 1.65722 1.93671 1.21323 1.10890 0.94639 0.99922 1.17289 0.94383 0.78101 0.92323 1.91626 1.90685 1.29471 1.96712 0.96460 0.94345 0.88155 0.92290 0.81860 0.83303 0.79773 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 9.33 37.16 0.35 -3.63 16 2 C 0.22 5.86 2.56 -27.89 -0.07 5.78 16 3 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 4 C -0.52 -14.58 8.90 -34.44 -0.31 -14.88 16 5 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 O -0.35 -8.31 9.11 -40.68 -0.37 -8.68 16 13 C 0.50 10.99 7.86 34.42 0.27 11.26 16 14 O -0.50 -12.71 14.59 -19.28 -0.28 -12.99 16 15 C -0.17 -3.00 5.88 -104.92 -0.62 -3.62 16 16 C 0.00 0.03 9.60 -39.21 -0.38 -0.35 16 17 C -0.16 -1.72 9.96 -39.49 -0.39 -2.11 16 18 C 0.16 1.79 6.49 -39.03 -0.25 1.54 16 19 O -0.31 -2.72 10.42 -18.79 -0.20 -2.91 16 20 C 0.41 2.56 5.98 101.05 0.60 3.16 16 21 F -0.20 -1.64 15.56 2.25 0.04 -1.60 16 22 F -0.20 -1.65 15.57 2.25 0.04 -1.62 16 23 C -0.25 -3.24 8.21 -39.43 -0.32 -3.56 16 24 C 0.20 3.24 7.28 -38.97 -0.28 2.95 16 25 F -0.11 -1.97 15.54 2.25 0.03 -1.93 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.16 2.05 7.60 -52.49 -0.40 1.65 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.19 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.15 1.79 5.06 -52.48 -0.27 1.52 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -32.80 304.82 -4.63 -37.43 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -2.59 Total: -1.70 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.83 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.63 Total: -24.69 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.85 Total: -24.58 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.80 -4.63 -37.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650441563.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.496 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds