Wall clock time and date at job start Tue Mar 31 2020 08:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38464 * 119.84468 * 2 1 4 4 C 1.38192 * 120.32865 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 119.98687 * 180.02562 * 4 3 2 6 6 C 1.38908 * 120.02549 * 359.74039 * 4 3 2 7 7 N 1.39451 * 120.14965 * 180.25720 * 6 4 3 8 8 C 1.40006 * 119.70104 * 0.51179 * 6 4 3 9 9 C 1.48156 * 120.16278 * 179.76339 * 8 6 4 10 10 C 1.39498 * 119.66054 * 173.43967 * 9 8 6 11 11 C 1.38184 * 119.14478 * 180.02562 * 10 9 8 12 12 C 1.39452 * 118.46353 * 0.27789 * 11 10 9 13 13 O 1.35723 * 120.38306 * 179.69948 * 12 11 10 14 14 C 1.34815 * 116.99352 * 5.62453 * 13 12 11 15 15 H 1.07996 * 120.00517 * 354.89038 * 14 13 12 16 16 C 1.38650 * 119.99757 * 174.89155 * 14 13 12 17 17 N 1.31559 * 120.00018 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99794 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46945 * 90.00294 * 18 16 14 20 20 H 1.48500 * 109.46923 * 210.00175 * 18 16 14 21 21 H 1.48495 * 109.47466 * 330.00133 * 18 16 14 22 22 C 1.38934 * 119.23969 * 359.45587 * 12 11 10 23 23 N 1.31690 * 120.79421 * 0.55713 * 22 12 11 24 24 C 1.37944 * 119.85165 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46647 * 269.97464 * 1 2 3 26 26 H 1.08996 * 109.46865 * 29.97492 * 1 2 3 27 27 H 1.09001 * 109.46833 * 149.97761 * 1 2 3 28 28 H 1.07997 * 119.84070 * 0.02562 * 3 2 1 29 29 H 0.97001 * 119.99731 * 334.50546 * 7 6 4 30 30 H 0.96997 * 119.99956 * 154.51262 * 7 6 4 31 31 H 1.08000 * 120.42598 * 0.02562 * 10 9 8 32 32 H 1.07998 * 120.76709 * 180.02562 * 11 10 9 33 33 H 0.96999 * 120.00179 * 180.02562 * 17 16 14 34 34 H 1.07999 * 119.59930 * 180.25038 * 22 12 11 35 35 H 1.07993 * 120.01881 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.2010 0.0000 4 6 3.5780 1.2127 -0.0005 5 17 4.4329 2.7235 0.0001 6 6 4.2832 0.0159 0.0044 7 7 5.6777 0.0247 0.0093 8 6 3.5877 -1.1991 -0.0010 9 6 4.3296 -2.4816 -0.0011 10 6 3.6323 -3.6824 0.1320 11 6 4.3350 -4.8723 0.1310 12 6 5.7227 -4.8245 0.0021 13 8 6.4520 -5.9692 0.0025 14 6 5.7676 -7.1307 0.0140 15 1 4.6916 -7.1227 0.1056 16 6 6.4454 -8.3356 -0.0918 17 7 5.7777 -9.4691 -0.0801 18 14 8.3065 -8.3495 -0.2510 19 1 8.9185 -8.4088 1.1007 20 1 8.7272 -9.5369 -1.0374 21 1 8.7534 -7.1139 -0.9429 22 6 6.3498 -3.5920 -0.1320 23 7 5.6509 -2.4759 -0.1273 24 6 2.1937 -1.1964 -0.0005 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6510 2.1333 0.0004 29 1 6.1591 0.7853 -0.3522 30 1 6.1661 -0.7298 0.3740 31 1 2.5572 -3.6822 0.2345 32 1 3.8217 -5.8171 0.2320 33 1 6.2518 -10.3121 -0.1537 34 1 7.4238 -3.5485 -0.2364 35 1 1.6516 -2.1304 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244570899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:03 Heat of formation + Delta-G solvation = 27.544061 kcal Electronic energy + Delta-G solvation = -21216.234242 eV Core-core repulsion = 17819.663605 eV Total energy + Delta-G solvation = -3396.570636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.072 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22874 -39.15425 -37.42071 -36.38303 -34.84627 -32.71626 -32.13417 -31.25435 -30.54965 -28.60929 -25.86326 -25.50096 -23.54945 -22.94911 -21.41794 -20.58988 -18.26030 -17.58805 -17.03608 -16.68124 -16.18406 -15.50052 -14.82993 -14.61012 -14.44464 -14.23154 -14.00723 -13.87719 -13.49056 -13.06496 -12.92942 -12.69232 -12.58047 -12.30991 -12.28677 -11.91163 -11.52204 -11.37522 -11.23028 -11.03142 -10.81507 -10.44156 -10.08732 -9.84553 -9.25997 -9.22391 -8.98666 -8.78081 -7.74781 -7.02153 -6.64900 -4.29713 0.96675 1.52008 1.82045 2.17924 2.25181 3.10134 3.12956 3.26178 3.74081 4.05097 4.16400 4.43063 4.49304 4.70745 4.82600 4.89929 5.19160 5.19339 5.25741 5.32116 5.50647 5.60276 5.66475 5.74913 5.86755 5.90552 6.01687 6.13904 6.29870 6.38393 6.56301 6.73875 6.82487 6.89996 7.13900 7.50057 7.74537 7.77461 8.23875 8.46808 8.68028 9.24907 10.41384 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.003251 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.147862 B = 8611.291515 C = 9668.587920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.135 4.135 3 C -0.072 4.072 4 C -0.112 4.112 5 Cl -0.083 7.083 6 C 0.245 3.755 7 N -0.857 5.857 8 C -0.073 4.073 9 C 0.069 3.931 10 C -0.105 4.105 11 C -0.181 4.181 12 C 0.110 3.890 13 O -0.199 6.199 14 C -0.393 4.393 15 H 0.108 0.892 16 C 0.067 3.933 17 N -0.867 5.867 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.257 1.257 22 C 0.034 3.966 23 N -0.442 5.442 24 C -0.067 4.067 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.126 0.874 29 H 0.388 0.612 30 H 0.416 0.584 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.284 0.716 34 H 0.153 0.847 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 17.501 0.264 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.138 4.138 3 C -0.092 4.092 4 C -0.144 4.144 5 Cl -0.054 7.054 6 C 0.135 3.865 7 N -0.404 5.404 8 C -0.078 4.078 9 C -0.066 4.066 10 C -0.125 4.125 11 C -0.207 4.207 12 C 0.054 3.946 13 O -0.101 6.101 14 C -0.468 4.468 15 H 0.126 0.874 16 C -0.138 4.138 17 N -0.503 5.503 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.181 1.181 22 C -0.128 4.128 23 N -0.153 5.153 24 C -0.087 4.087 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.144 0.856 29 H 0.217 0.783 30 H 0.257 0.743 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.094 0.906 34 H 0.171 0.829 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.085 18.026 0.188 18.730 hybrid contribution 0.610 -0.969 -0.012 1.145 sum -4.475 17.057 0.175 17.635 Atomic orbital electron populations 1.20640 0.90916 1.02432 1.01940 1.19393 0.95901 0.91983 1.06489 1.20628 0.91196 0.98194 0.99170 1.20397 0.92379 0.85059 1.16559 1.98312 1.77880 1.31711 1.97533 1.17421 0.85439 0.90514 0.93133 1.43115 1.02412 1.25845 1.69023 1.18030 0.92175 0.89634 1.08010 1.18971 0.89174 0.91232 1.07213 1.21702 1.00173 0.91817 0.98802 1.21615 0.93940 0.99273 1.05903 1.20219 0.90969 0.88154 0.95221 1.83555 1.35315 1.12263 1.78959 1.20814 0.93853 0.80169 1.51961 0.87435 1.24521 1.00763 0.93450 0.95111 1.69635 1.37194 0.97653 1.45774 0.86145 0.82797 0.78664 0.79182 1.19596 1.20514 1.18089 1.21736 0.99731 0.85286 1.06052 1.66874 1.07516 1.29046 1.11858 1.20941 0.92246 0.97888 0.97623 0.91671 0.91966 0.91688 0.85614 0.78342 0.74324 0.85657 0.83771 0.90605 0.82933 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.00 36.01 0.36 -0.52 16 2 C -0.14 -1.57 5.88 -104.64 -0.61 -2.19 16 3 C -0.07 -0.86 9.46 -39.51 -0.37 -1.23 16 4 C -0.11 -1.49 6.33 -39.35 -0.25 -1.74 16 5 Cl -0.08 -0.97 27.79 -51.86 -1.44 -2.41 16 6 C 0.24 3.62 6.76 -83.48 -0.56 3.06 16 7 N -0.86 -11.97 8.22 32.58 0.27 -11.70 16 8 C -0.07 -1.13 5.89 -104.73 -0.62 -1.74 16 9 C 0.07 1.20 6.71 -82.94 -0.56 0.64 16 10 C -0.11 -1.80 9.44 -39.13 -0.37 -2.17 16 11 C -0.18 -3.60 9.25 -39.15 -0.36 -3.96 16 12 C 0.11 2.35 6.67 -38.87 -0.26 2.09 16 13 O -0.20 -4.82 8.59 0.18 0.00 -4.82 16 14 C -0.39 -10.28 9.95 30.88 0.31 -9.98 16 15 H 0.11 2.86 5.48 -52.49 -0.29 2.57 16 16 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 17 N -0.87 -23.59 13.96 55.48 0.77 -22.81 16 18 Si 0.91 20.26 28.62 -169.99 -4.86 15.40 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 22 C 0.03 0.64 11.14 -17.35 -0.19 0.45 16 23 N -0.44 -7.88 6.74 -9.62 -0.06 -7.94 16 24 C -0.07 -0.88 9.05 -39.26 -0.36 -1.24 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.39 4.75 7.90 -40.82 -0.32 4.42 16 30 H 0.42 6.17 5.89 -40.82 -0.24 5.93 16 31 H 0.13 1.76 6.23 -52.49 -0.33 1.44 16 32 H 0.14 2.92 5.75 -52.49 -0.30 2.62 16 33 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.15 2.55 8.06 -52.49 -0.42 2.13 16 35 H 0.13 1.48 6.22 -52.49 -0.33 1.15 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -27.30 313.48 -7.59 -34.89 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.05 Total: 11.53 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -3.94 Total: -16.86 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.98 Total: -42.46 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.86 Total: 15.40 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.44 Total: -2.41 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.30 -7.59 -34.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244570899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.435 kcal (2) G-P(sol) polarization free energy of solvation -27.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds