Wall clock time and date at job start Tue Mar 31 2020 09:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38971 * 119.65058 * 2 1 4 4 C 1.37395 * 120.18709 * 179.97438 * 3 2 1 5 5 C 1.39901 * 120.17760 * 0.04970 * 4 3 2 6 6 S 1.75989 * 130.58119 * 179.97438 * 5 4 3 7 7 C 1.75485 * 91.62038 * 179.97438 * 6 5 4 8 8 C 1.47008 * 124.66088 * 179.97438 * 7 6 5 9 9 O 1.21643 * 120.00173 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99595 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72423 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99757 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00476 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00323 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47187 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99997 * 18 16 14 21 21 H 1.48506 * 109.46902 * 240.00248 * 18 16 14 22 22 C 1.33685 * 110.68327 * 0.24285 * 7 6 5 23 23 C 1.40047 * 119.85985 * 359.97188 * 5 4 3 24 24 C 1.35915 * 119.65405 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46652 * 269.97214 * 1 2 3 26 26 H 1.08999 * 109.47321 * 29.97236 * 1 2 3 27 27 H 1.08995 * 109.47244 * 149.97815 * 1 2 3 28 28 H 1.08002 * 119.90874 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.91203 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 31 31 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 32 32 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 33 33 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 34 34 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 35 35 H 0.97000 * 120.00386 * 359.97438 * 13 12 11 36 36 H 0.96996 * 120.00458 * 179.97438 * 17 16 14 37 37 H 1.07996 * 122.21377 * 179.75249 * 22 7 6 38 38 H 1.08003 * 119.75079 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.2077 0.0000 4 6 3.5684 1.2206 0.0005 5 6 4.2830 0.0178 0.0000 6 16 6.0169 -0.2837 -0.0001 7 6 5.7652 -2.0204 0.0000 8 6 6.8419 -3.0213 -0.0007 9 8 6.5702 -4.2070 -0.0010 10 7 8.1301 -2.6251 -0.0008 11 6 9.2032 -3.6224 0.0047 12 6 10.5588 -2.9131 0.0104 13 7 11.6319 -3.9104 0.0165 14 6 12.9407 -3.5079 0.0217 15 1 13.1820 -2.4553 0.0217 16 6 13.9575 -4.4530 0.0280 17 7 13.6636 -5.7359 0.0295 18 14 15.7430 -3.9038 0.0359 19 1 15.8046 -2.4202 0.0333 20 1 16.4159 -4.4256 1.2524 21 1 16.4277 -4.4292 -1.1726 22 6 4.4597 -2.3084 -0.0052 23 6 3.5950 -1.2020 -0.0004 24 6 2.1795 -1.1811 -0.0005 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5141 28 1 1.6474 2.1389 0.0004 29 1 4.0982 2.1617 0.0009 30 1 8.3468 -1.6796 -0.0001 31 1 9.1155 -4.2456 0.8948 32 1 9.1236 -4.2468 -0.8852 33 1 10.6464 -2.2900 -0.8796 34 1 10.6385 -2.2888 0.9004 35 1 11.4153 -4.8559 0.0168 36 1 14.3740 -6.3962 0.0336 37 1 4.0943 -3.3246 -0.0100 38 1 1.6298 -2.1108 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146326310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:53 Heat of formation + Delta-G solvation = 13.252334 kcal Electronic energy + Delta-G solvation = -20448.347534 eV Core-core repulsion = 17189.033962 eV Total energy + Delta-G solvation = -3259.313571 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31086 -39.51128 -36.15805 -35.55823 -33.91278 -32.65097 -31.35236 -30.28176 -28.03994 -27.26414 -24.90079 -23.38203 -22.90482 -21.60542 -21.15279 -19.85653 -18.64981 -17.31961 -17.03281 -16.15195 -15.68293 -15.51613 -15.24041 -14.87770 -14.56506 -14.51696 -13.98645 -13.91360 -13.88387 -13.23837 -13.20687 -13.08260 -12.89104 -12.64457 -12.09272 -11.59983 -11.56055 -11.21556 -11.15395 -11.05001 -10.83689 -10.83535 -10.20203 -10.05828 -10.01745 -9.77269 -9.10712 -8.92506 -8.76290 -8.06377 -7.00907 -5.80642 -3.11547 0.00518 0.82253 1.08600 1.54045 1.67882 3.02343 3.05754 3.32161 3.41783 3.47102 3.49613 4.21130 4.37426 4.45136 4.57497 4.73999 4.76044 4.86040 5.12416 5.16640 5.20353 5.36721 5.43054 5.48582 5.55697 5.57380 5.63159 5.73562 5.86116 5.91391 5.97740 6.09389 6.14404 6.38638 6.43812 6.66764 6.67182 7.43468 7.65783 8.10356 8.36692 9.48231 10.02320 10.37292 11.41944 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.044400 B = 0.002208 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.485247 B =12675.672408 C =13280.375038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.093 4.093 4 C -0.083 4.083 5 C -0.134 4.134 6 S 0.125 5.875 7 C -0.214 4.214 8 C 0.583 3.417 9 O -0.525 6.525 10 N -0.714 5.714 11 C 0.111 3.889 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.244 4.244 15 H 0.073 0.927 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.047 4.047 23 C -0.080 4.080 24 C -0.070 4.070 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.398 0.602 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.156 0.844 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.763 15.633 -0.064 31.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.105 4.105 5 C -0.251 4.251 6 S 0.392 5.608 7 C -0.332 4.332 8 C 0.368 3.632 9 O -0.403 6.403 10 N -0.365 5.365 11 C -0.012 4.012 12 C 0.016 3.984 13 N -0.374 5.374 14 C -0.375 4.375 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.079 4.079 23 C -0.088 4.088 24 C -0.090 4.090 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.232 0.768 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.173 0.827 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.362 15.723 -0.067 30.695 hybrid contribution -0.070 -0.460 0.013 0.465 sum -26.433 15.263 -0.054 30.523 Atomic orbital electron populations 1.20815 0.90588 1.03076 1.02602 1.19460 0.96501 0.92842 1.00447 1.21011 0.93333 0.97892 0.99197 1.20482 0.93859 0.95541 1.00663 1.22983 0.97136 0.97436 1.07503 1.84159 1.01515 0.98516 1.76644 1.23771 0.97887 0.97348 1.14228 1.17028 0.81820 0.87246 0.77132 1.90839 1.83113 1.16434 1.49895 1.45816 1.05417 1.10811 1.74476 1.21673 0.85688 0.90871 1.03002 1.20764 0.86162 0.92924 0.98591 1.42181 1.01085 1.04431 1.89713 1.19240 0.82440 0.92452 1.43365 0.90928 1.24790 0.98186 0.95246 1.02650 1.69674 1.31606 0.99306 1.57224 0.86069 0.84938 0.77625 0.77233 1.20496 1.21762 1.21766 1.20246 0.90765 1.00304 0.96586 1.18203 0.94442 0.91350 1.04832 1.20693 0.91276 0.98376 0.98636 0.90955 0.91319 0.91309 0.85047 0.85188 0.76769 0.90810 0.90801 0.95654 0.95669 0.77961 0.93392 0.82657 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 9.99 36.01 0.36 -0.14 16 2 C -0.09 -0.63 5.83 -105.18 -0.61 -1.24 16 3 C -0.09 -0.62 9.67 -39.62 -0.38 -1.01 16 4 C -0.08 -0.66 10.07 -39.27 -0.40 -1.06 16 5 C -0.13 -1.35 6.50 -38.28 -0.25 -1.60 16 6 S 0.12 1.29 22.26 -107.50 -2.39 -1.10 16 7 C -0.21 -2.73 6.32 -37.63 -0.24 -2.97 16 8 C 0.58 9.10 7.79 -12.71 -0.10 9.00 16 9 O -0.53 -9.93 16.72 5.24 0.09 -9.84 16 10 N -0.71 -10.59 5.55 -61.51 -0.34 -10.93 16 11 C 0.11 1.95 5.79 -4.04 -0.02 1.92 16 12 C 0.14 2.85 6.37 -4.04 -0.03 2.83 16 13 N -0.73 -18.62 5.60 -59.91 -0.34 -18.96 16 14 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 15 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 18 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 C -0.05 -0.55 9.79 -40.36 -0.40 -0.94 16 23 C -0.08 -0.83 5.87 -107.13 -0.63 -1.46 16 24 C -0.07 -0.58 9.64 -39.15 -0.38 -0.96 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 27 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 28 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 29 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.40 4.97 7.52 -40.82 -0.31 4.66 16 31 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.39 10.42 7.67 -40.82 -0.31 10.10 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.16 1.72 7.96 -52.49 -0.42 1.30 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -33.31 343.50 -10.22 -43.53 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.80 Total: 7.44 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -3.31 Total: -5.07 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.05 Total: -57.48 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.39 Total: -1.10 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.31 -10.22 -43.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146326310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.781 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds