Wall clock time and date at job start Tue Mar 31 2020 09:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38971 * 119.65058 * 2 1 4 4 C 1.37395 * 120.18709 * 179.97438 * 3 2 1 5 5 C 1.39901 * 120.17760 * 0.04970 * 4 3 2 6 6 S 1.75989 * 130.58119 * 179.97438 * 5 4 3 7 7 C 1.75485 * 91.62038 * 179.97438 * 6 5 4 8 8 C 1.47008 * 124.66088 * 179.97438 * 7 6 5 9 9 O 1.21643 * 120.00173 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99595 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72423 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99757 * 179.97438 * 13 12 11 15 15 H 1.07992 * 120.00476 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00323 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47187 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99997 * 18 16 14 21 21 H 1.48506 * 109.46902 * 240.00248 * 18 16 14 22 22 C 1.33685 * 110.68327 * 0.24285 * 7 6 5 23 23 C 1.40047 * 119.85985 * 359.97188 * 5 4 3 24 24 C 1.35915 * 119.65405 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46652 * 269.97214 * 1 2 3 26 26 H 1.08999 * 109.47321 * 29.97236 * 1 2 3 27 27 H 1.08995 * 109.47244 * 149.97815 * 1 2 3 28 28 H 1.08002 * 119.90874 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.91203 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 31 31 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 32 32 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 33 33 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 34 34 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 35 35 H 0.97000 * 120.00386 * 359.97438 * 13 12 11 36 36 H 0.96996 * 120.00458 * 179.97438 * 17 16 14 37 37 H 1.07996 * 122.21377 * 179.75249 * 22 7 6 38 38 H 1.08003 * 119.75079 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.2077 0.0000 4 6 3.5684 1.2206 0.0005 5 6 4.2830 0.0178 0.0000 6 16 6.0169 -0.2837 -0.0001 7 6 5.7652 -2.0204 0.0000 8 6 6.8419 -3.0213 -0.0007 9 8 6.5702 -4.2070 -0.0010 10 7 8.1301 -2.6251 -0.0008 11 6 9.2032 -3.6224 0.0047 12 6 10.5588 -2.9131 0.0104 13 7 11.6319 -3.9104 0.0165 14 6 12.9407 -3.5079 0.0217 15 1 13.1820 -2.4553 0.0217 16 6 13.9575 -4.4530 0.0280 17 7 13.6636 -5.7359 0.0295 18 14 15.7430 -3.9038 0.0359 19 1 15.8046 -2.4202 0.0333 20 1 16.4159 -4.4256 1.2524 21 1 16.4277 -4.4292 -1.1726 22 6 4.4597 -2.3084 -0.0052 23 6 3.5950 -1.2020 -0.0004 24 6 2.1795 -1.1811 -0.0005 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5141 28 1 1.6474 2.1389 0.0004 29 1 4.0982 2.1617 0.0009 30 1 8.3468 -1.6796 -0.0001 31 1 9.1155 -4.2456 0.8948 32 1 9.1236 -4.2468 -0.8852 33 1 10.6464 -2.2900 -0.8796 34 1 10.6385 -2.2888 0.9004 35 1 11.4153 -4.8559 0.0168 36 1 14.3740 -6.3962 0.0336 37 1 4.0943 -3.3246 -0.0100 38 1 1.6298 -2.1108 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146326310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:53 Heat of formation + Delta-G solvation = -8.107307 kcal Electronic energy + Delta-G solvation = -20449.273757 eV Core-core repulsion = 17189.033962 eV Total energy + Delta-G solvation = -3260.239795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20255 -40.54250 -37.49428 -36.62583 -35.62234 -33.36436 -33.10692 -31.19235 -29.53034 -27.88965 -26.23616 -24.95156 -23.53058 -23.18905 -22.21666 -20.75870 -19.62451 -19.27229 -17.92208 -17.32242 -16.86475 -16.61000 -16.46549 -16.04998 -15.63624 -15.52130 -15.28508 -15.09779 -14.91723 -14.71244 -14.52992 -13.86160 -13.80291 -13.17694 -13.07597 -13.01211 -12.73314 -12.71857 -12.55643 -12.23953 -12.06598 -11.95816 -11.88676 -11.75300 -11.42340 -11.03203 -10.68771 -10.38488 -9.52904 -9.09315 -8.77981 -7.98475 -5.30308 -0.81661 0.20950 0.28295 0.72996 0.86595 1.47854 1.49419 1.59541 1.82195 1.91894 2.55786 2.65259 3.35770 3.41010 3.68478 3.88504 3.89240 3.94305 4.10843 4.14701 4.23743 4.26358 4.50530 4.55023 4.64908 4.69041 4.81893 4.90778 4.91687 5.03026 5.06282 5.18080 5.20403 5.22816 5.31934 5.47320 5.59632 5.88849 6.21962 6.23141 6.88825 7.28539 7.98869 8.22748 9.25274 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.044400 B = 0.002208 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.485247 B =12675.672408 C =13280.375038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.081 4.081 4 C -0.094 4.094 5 C -0.144 4.144 6 S 0.142 5.858 7 C -0.246 4.246 8 C 0.585 3.415 9 O -0.567 6.567 10 N -0.705 5.705 11 C 0.127 3.873 12 C 0.148 3.852 13 N -0.746 5.746 14 C -0.249 4.249 15 H 0.084 0.916 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.980 3.020 19 H -0.262 1.262 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.037 4.037 23 C -0.105 4.105 24 C -0.078 4.078 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.164 0.836 29 H 0.150 0.850 30 H 0.411 0.589 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.375 0.625 36 H 0.253 0.747 37 H 0.153 0.847 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.470 18.720 -0.072 34.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.103 4.103 4 C -0.116 4.116 5 C -0.261 4.261 6 S 0.409 5.591 7 C -0.365 4.365 8 C 0.372 3.628 9 O -0.448 6.448 10 N -0.357 5.357 11 C 0.003 3.997 12 C 0.021 3.979 13 N -0.389 5.389 14 C -0.380 4.380 15 H 0.101 0.899 16 C -0.270 4.270 17 N -0.620 5.620 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.070 4.070 23 C -0.112 4.112 24 C -0.098 4.098 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.182 0.818 29 H 0.168 0.832 30 H 0.248 0.752 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.207 0.793 36 H 0.061 0.939 37 H 0.170 0.830 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -28.087 18.887 -0.075 33.847 hybrid contribution 0.212 -1.289 0.015 1.306 sum -27.875 17.598 -0.059 32.965 Atomic orbital electron populations 1.20882 0.88476 1.04150 1.03475 1.19857 0.98063 0.92433 0.98898 1.21475 0.92992 0.99155 0.96657 1.20829 0.94606 0.95517 1.00693 1.23234 0.96816 0.98269 1.07750 1.83907 1.02277 0.96112 1.76803 1.23462 0.97228 0.98378 1.17404 1.17388 0.82279 0.87292 0.75889 1.90806 1.83750 1.18362 1.51906 1.45609 1.04757 1.10973 1.74318 1.21279 0.85571 0.90962 1.01881 1.20843 0.85584 0.92044 0.99407 1.42398 1.01815 1.04909 1.89791 1.19689 0.83591 0.92956 1.41766 0.89854 1.25692 1.02623 0.95360 1.03278 1.69839 1.32630 1.00464 1.59080 0.84976 0.79455 0.78056 0.76631 1.18603 1.22005 1.22008 1.20405 0.90815 1.00858 0.94946 1.18305 0.95415 0.90943 1.06553 1.20963 0.90492 0.99841 0.98534 0.90050 0.89778 0.90817 0.81826 0.83181 0.75226 0.92039 0.92020 0.94371 0.94393 0.79332 0.93863 0.82975 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.99 71.24 0.71 0.12 16 2 C -0.09 -1.00 5.83 -20.23 -0.12 -1.11 16 3 C -0.08 -0.80 9.67 22.25 0.22 -0.59 16 4 C -0.09 -1.25 10.07 22.47 0.23 -1.02 16 5 C -0.14 -2.72 6.50 23.11 0.15 -2.57 16 6 S 0.14 2.84 22.26 -56.49 -1.26 1.59 16 7 C -0.25 -6.43 6.32 23.54 0.15 -6.28 16 8 C 0.58 18.85 7.79 86.54 0.67 19.52 16 9 O -0.57 -22.49 16.72 -4.17 -0.07 -22.56 16 10 N -0.71 -21.13 5.55 -466.77 -2.59 -23.73 16 11 C 0.13 4.57 5.79 86.38 0.50 5.07 16 12 C 0.15 5.83 6.37 86.38 0.55 6.38 16 13 N -0.75 -38.44 5.60 -343.45 -1.92 -40.37 16 14 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 15 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 17 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 18 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 C -0.04 -0.88 9.79 21.77 0.21 -0.67 16 23 C -0.10 -2.10 5.87 -21.49 -0.13 -2.23 16 24 C -0.08 -1.17 9.64 22.55 0.22 -0.95 16 25 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 27 H 0.07 0.34 8.07 -2.39 -0.02 0.32 16 28 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 29 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.41 10.09 7.52 -92.71 -0.70 9.39 16 31 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 36 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.15 3.55 7.96 -2.91 -0.02 3.53 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -72.42 343.50 0.83 -71.59 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.31 Total: 26.67 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 4.67 Total: -1.37 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -4.23 Total: -124.01 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.07 Total: -22.56 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.26 Total: 1.59 kcal Total: -72.42 0.83 -71.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146326310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.481 kcal (2) G-P(sol) polarization free energy of solvation -72.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds