Wall clock time and date at job start Tue Mar 31 2020 09:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21493 * 119.99928 * 0.02562 * 13 12 2 15 15 C 1.48346 * 119.99878 * 180.02562 * 13 12 2 16 16 C 1.41893 * 126.83954 * 179.71365 * 15 13 12 17 17 C 1.36747 * 103.81222 * 179.85899 * 16 15 13 18 18 C 1.47806 * 126.81690 * 180.12615 * 17 16 15 19 19 C 1.39577 * 120.15979 * 310.02355 * 18 17 16 20 20 C 1.37927 * 119.87948 * 179.77197 * 19 18 17 21 21 C 1.38401 * 120.19791 * 0.50759 * 20 19 18 22 22 C 1.38269 * 120.32501 * 359.74465 * 21 20 19 23 23 C 1.38251 * 120.11523 * 0.02562 * 22 21 20 24 24 F 1.35096 * 120.10000 * 179.97438 * 23 22 21 25 25 O 1.34457 * 106.36055 * 0.40068 * 17 16 15 26 26 N 1.20873 * 111.73668 * 359.72517 * 25 17 16 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 32 32 H 1.08007 * 128.09072 * 359.96205 * 16 15 13 33 33 H 1.08004 * 120.05997 * 0.02562 * 19 18 17 34 34 H 1.07995 * 119.89679 * 180.23060 * 20 19 18 35 35 H 1.08005 * 119.83705 * 179.77187 * 21 20 19 36 36 H 1.08001 * 119.93800 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8584 1.1607 -2.4116 15 6 2.6410 -0.7176 -3.5686 16 6 2.8259 -0.1568 -4.8588 17 6 3.2944 -1.2024 -5.6052 18 6 3.6594 -1.1750 -7.0372 19 6 2.7769 -0.6376 -7.9757 20 6 3.1254 -0.6107 -9.3099 21 6 4.3427 -1.1244 -9.7220 22 6 5.2209 -1.6636 -8.8002 23 6 4.8871 -1.6930 -7.4589 24 9 5.7453 -2.2203 -6.5585 25 8 3.3513 -2.2618 -4.7792 26 7 2.9883 -1.9782 -3.6617 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 2.2491 -1.6316 -1.1527 32 1 2.6414 0.8589 -5.1766 33 1 1.8247 -0.2398 -7.6571 34 1 2.4444 -0.1915 -10.0358 35 1 4.6080 -1.1037 -10.7687 36 1 6.1694 -2.0624 -9.1286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:23 Heat of formation + Delta-G solvation = 4.526521 kcal Electronic energy + Delta-G solvation = -23295.143914 eV Core-core repulsion = 19469.238787 eV Total energy + Delta-G solvation = -3825.905127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.24111 -44.97983 -39.35336 -38.87196 -34.95711 -34.04963 -33.44452 -32.32903 -31.10184 -29.86684 -28.95983 -25.31052 -24.65890 -24.16796 -22.99560 -22.39676 -20.85185 -19.50798 -18.66950 -17.79114 -17.64409 -16.90182 -16.57006 -16.15178 -15.93506 -15.53942 -15.26533 -14.74038 -14.37370 -14.16164 -14.07725 -13.65804 -13.60625 -13.11422 -12.84905 -12.47130 -12.41617 -11.78474 -11.68783 -11.57555 -11.13228 -10.99295 -10.82499 -10.41042 -10.30729 -10.25491 -10.18783 -9.50842 -9.36295 -9.10153 -8.92528 -8.58667 -8.04289 -6.14409 -4.23822 0.31491 0.71013 1.30423 1.75865 2.71410 3.14372 3.26576 3.31028 3.32806 3.60379 3.71026 3.74991 4.11557 4.27004 4.31234 4.43493 4.59926 4.71252 4.81944 4.97470 5.12958 5.18273 5.31325 5.50767 5.57066 5.60418 5.75805 5.84710 5.89452 6.32614 6.77465 6.90531 7.08079 7.30989 7.47055 7.65150 7.84115 8.02609 8.09402 8.54219 8.69519 8.93771 9.43065 10.91733 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.033187 B = 0.002751 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.489385 B =10174.834207 C =10759.594274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.687 5.687 13 C 0.581 3.419 14 O -0.536 6.536 15 C -0.012 4.012 16 C -0.153 4.153 17 C -0.013 4.013 18 C -0.052 4.052 19 C -0.059 4.059 20 C -0.129 4.129 21 C -0.078 4.078 22 C -0.155 4.155 23 C 0.127 3.873 24 F -0.127 7.127 25 O 0.132 5.868 26 N -0.327 5.327 27 H 0.093 0.907 28 H 0.028 0.972 29 H 0.016 0.984 30 H 0.266 0.734 31 H 0.396 0.604 32 H 0.184 0.816 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -4.502 -25.612 26.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.334 5.334 13 C 0.362 3.638 14 O -0.413 6.413 15 C -0.171 4.171 16 C -0.175 4.175 17 C -0.076 4.076 18 C -0.054 4.054 19 C -0.078 4.078 20 C -0.147 4.147 21 C -0.096 4.096 22 C -0.173 4.173 23 C 0.107 3.893 24 F -0.105 7.105 25 O 0.054 5.946 26 N -0.026 5.026 27 H 0.112 0.888 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.201 0.799 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.129 -4.512 -24.431 25.368 hybrid contribution 0.532 -0.330 0.688 0.930 sum 5.662 -4.842 -23.743 24.885 Atomic orbital electron populations 1.22095 0.98039 0.99395 1.01125 1.18890 0.91316 0.94072 0.79488 0.92951 1.21163 1.32726 1.13402 0.90164 0.91966 1.24877 0.94720 0.94945 0.99057 1.69885 1.35729 1.22358 1.24111 0.86464 0.79219 0.79609 0.81574 1.20108 1.21055 1.20079 1.46522 1.63057 1.14028 1.09815 1.16937 0.79201 0.86097 0.81553 1.90756 1.51578 1.14696 1.84257 1.23886 1.04826 0.90573 0.97836 1.22658 1.02838 1.01193 0.90829 1.22116 1.05365 0.87675 0.92469 1.17618 0.94543 1.05265 0.88021 1.21182 0.98485 0.96168 0.91923 1.21171 0.97334 1.00732 0.95509 1.21203 0.93132 0.95390 0.99851 1.21139 1.02080 1.03368 0.90751 1.17801 0.87675 0.96629 0.87170 1.91566 1.68501 1.83526 1.66897 1.84940 1.61391 1.34283 1.13948 1.74152 1.13026 1.16623 0.98755 0.88803 0.95260 0.96513 0.92426 0.77068 0.79887 0.84019 0.84434 0.84490 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.26 6.92 2.56 -69.08 -0.18 6.74 16 3 H 0.05 1.55 7.58 -51.93 -0.39 1.16 16 4 C -0.54 -14.63 8.73 -34.44 -0.30 -14.93 16 5 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -25.05 11.32 55.43 0.63 -24.43 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.69 -15.63 5.07 -55.72 -0.28 -15.91 16 13 C 0.58 12.68 7.81 -12.10 -0.09 12.59 16 14 O -0.54 -13.11 16.61 5.37 0.09 -13.02 16 15 C -0.01 -0.22 7.18 -82.63 -0.59 -0.82 16 16 C -0.15 -2.23 10.88 -38.72 -0.42 -2.65 16 17 C -0.01 -0.17 6.52 -36.21 -0.24 -0.41 16 18 C -0.05 -0.53 5.82 -104.91 -0.61 -1.14 16 19 C -0.06 -0.44 9.72 -39.20 -0.38 -0.82 16 20 C -0.13 -0.69 10.03 -39.64 -0.40 -1.08 16 21 C -0.08 -0.39 10.04 -39.51 -0.40 -0.79 16 22 C -0.15 -1.05 10.01 -39.57 -0.40 -1.44 16 23 C 0.13 1.25 7.29 -39.01 -0.28 0.96 16 24 F -0.13 -1.51 16.83 2.25 0.04 -1.47 16 25 O 0.13 2.00 11.20 16.07 0.18 2.18 16 26 N -0.33 -5.65 11.81 33.35 0.39 -5.25 16 27 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.40 8.34 8.29 -40.82 -0.34 8.00 16 32 H 0.18 2.27 8.06 -52.48 -0.42 1.85 16 33 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 35 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -31.74 329.40 -6.60 -38.34 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -3.55 Total: 4.03 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -4.04 Total: -5.44 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.74 Total: -45.59 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.27 Total: -10.83 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.74 -6.60 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.864 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds