Wall clock time and date at job start Tue Mar 31 2020 09:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47173 * 2 1 4 4 C 1.36783 * 120.00079 * 268.35643 * 3 2 1 5 5 H 1.08001 * 120.00528 * 140.21672 * 4 3 2 6 6 C 1.39115 * 119.99937 * 320.22040 * 4 3 2 7 7 N 1.31315 * 120.00048 * 341.02104 * 6 4 3 8 8 Si 1.86803 * 119.99877 * 161.02386 * 6 4 3 9 9 H 1.48493 * 109.47214 * 59.99723 * 8 6 4 10 10 H 1.48502 * 109.46842 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46876 * 299.99720 * 8 6 4 12 12 C 1.34777 * 120.00124 * 88.63664 * 3 2 1 13 13 O 1.21542 * 119.99884 * 354.91988 * 12 3 2 14 14 C 1.48191 * 120.00168 * 174.92015 * 12 3 2 15 15 C 1.41958 * 126.85001 * 174.38932 * 14 12 3 16 16 C 1.36706 * 103.81314 * 179.97438 * 15 14 12 17 17 C 1.47824 * 126.80703 * 180.02562 * 16 15 14 18 18 C 1.39588 * 120.11622 * 359.72905 * 17 16 15 19 19 C 1.37902 * 119.87944 * 179.74338 * 18 17 16 20 20 C 1.38590 * 120.11665 * 0.50742 * 19 18 17 21 21 F 1.35109 * 119.88228 * 179.74468 * 20 19 18 22 22 C 1.38599 * 120.24255 * 359.76329 * 20 19 18 23 23 C 1.37906 * 120.11089 * 359.97438 * 22 20 19 24 24 O 1.34479 * 106.38744 * 0.02562 * 16 15 14 25 25 N 1.20877 * 111.74825 * 359.74179 * 24 16 15 26 26 H 1.08992 * 109.47156 * 300.00332 * 1 2 3 27 27 H 1.09003 * 109.46503 * 59.99978 * 1 2 3 28 28 H 1.08995 * 109.47158 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47517 * 239.99612 * 2 1 3 30 30 H 1.09003 * 109.46503 * 120.00022 * 2 1 3 31 31 H 0.97002 * 120.00312 * 180.02562 * 7 6 4 32 32 H 1.07999 * 128.09474 * 359.94496 * 15 14 12 33 33 H 1.07997 * 120.06118 * 359.97438 * 18 17 16 34 34 H 1.08006 * 119.93807 * 180.23057 * 19 18 17 35 35 H 1.07998 * 119.94966 * 179.97438 * 22 20 19 36 36 H 1.08007 * 120.05631 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2784 2.0146 -1.1841 5 1 2.0148 3.0545 -1.3096 6 6 2.8823 1.3195 -2.2269 7 7 3.5338 0.2058 -1.9830 8 14 2.7665 1.9706 -3.9739 9 1 3.3798 3.3213 -4.0405 10 1 3.4873 1.0532 -4.8928 11 1 1.3398 2.0543 -4.3774 12 6 2.2168 2.0258 1.1669 13 8 1.9040 1.4956 2.2149 14 6 2.8164 3.3810 1.1721 15 6 2.9877 4.2318 2.2954 16 6 3.5788 5.3480 1.7724 17 6 3.9834 6.5638 2.5094 18 6 3.7652 6.6540 3.8852 19 6 4.1494 7.7883 4.5688 20 6 4.7416 8.8419 3.8906 21 9 5.1115 9.9531 4.5642 22 6 4.9555 8.7600 2.5236 23 6 4.5800 7.6280 1.8312 24 8 3.7192 5.1207 0.4544 25 7 3.2989 4.0317 0.1405 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9552 -0.2788 -2.7101 32 1 2.7144 4.0420 3.3229 33 1 3.2997 5.8354 4.4139 34 1 3.9845 7.8576 5.6340 35 1 5.4170 9.5839 1.9998 36 1 4.7474 7.5649 0.7661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134875607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:29 Heat of formation + Delta-G solvation = 16.489714 kcal Electronic energy + Delta-G solvation = -23781.915692 eV Core-core repulsion = 19956.529328 eV Total energy + Delta-G solvation = -3825.386364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.101 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.11722 -44.34299 -39.12539 -38.53412 -35.09008 -33.48413 -32.70480 -31.88631 -31.41930 -29.88489 -28.96076 -25.13849 -24.39226 -23.58087 -23.07932 -21.82648 -21.18035 -19.22719 -18.34351 -17.69666 -17.16483 -16.41540 -16.33611 -16.09978 -15.80136 -15.12320 -14.80905 -14.43379 -14.05582 -13.88276 -13.70771 -13.59389 -13.26239 -12.97024 -12.76512 -12.65425 -12.24139 -11.79967 -11.74685 -11.28075 -11.20653 -11.01836 -10.93131 -10.43852 -10.38988 -10.02568 -9.94537 -9.64212 -9.39930 -9.22324 -8.80487 -8.18947 -7.61669 -6.47373 -4.15008 0.49418 0.99042 2.02401 2.34740 3.14318 3.18196 3.21019 3.27483 3.48083 3.99594 4.01245 4.24379 4.30967 4.48076 4.60291 4.73650 4.87807 4.98019 5.05722 5.21364 5.54248 5.60164 5.69753 5.71777 5.86041 5.91630 6.07513 6.15842 6.22545 6.32334 6.34339 6.49354 6.58135 6.75796 6.96678 7.26808 7.43433 7.79378 8.31387 8.72339 8.99009 9.33514 9.75714 10.54324 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.003585 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.856240 B = 7807.452507 C = 8873.724867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.110 3.890 3 N -0.407 5.407 4 C -0.329 4.329 5 H 0.100 0.900 6 C 0.051 3.949 7 N -0.854 5.854 8 Si 0.918 3.082 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.525 3.475 13 O -0.598 6.598 14 C 0.007 3.993 15 C -0.165 4.165 16 C -0.033 4.033 17 C -0.011 4.011 18 C -0.068 4.068 19 C -0.149 4.149 20 C 0.098 3.902 21 F -0.140 7.140 22 C -0.150 4.150 23 C -0.071 4.071 24 O 0.110 5.890 25 N -0.287 5.287 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.273 0.727 32 H 0.173 0.827 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 12.934 6.807 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.013 4.013 3 N -0.124 5.124 4 C -0.458 4.458 5 H 0.118 0.882 6 C -0.157 4.157 7 N -0.490 5.490 8 Si 0.743 3.257 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.196 1.196 12 C 0.313 3.687 13 O -0.484 6.484 14 C -0.151 4.151 15 C -0.187 4.187 16 C -0.095 4.095 17 C -0.012 4.012 18 C -0.087 4.087 19 C -0.168 4.168 20 C 0.079 3.921 21 F -0.119 7.119 22 C -0.169 4.169 23 C -0.090 4.090 24 O 0.034 5.966 25 N 0.013 4.987 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.191 0.809 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.456 12.156 5.910 13.594 hybrid contribution 0.008 0.421 -0.038 0.423 sum 1.464 12.576 5.872 13.957 Atomic orbital electron populations 1.22056 0.97765 1.00347 1.01428 1.21440 0.92150 0.84097 1.03627 1.43405 1.52548 1.12067 1.04373 1.19627 1.39354 0.97765 0.89085 0.88220 1.25450 0.93467 0.96042 1.00748 1.69872 1.28892 1.16823 1.33422 0.86138 0.78785 0.79262 0.81487 1.19218 1.20785 1.19646 1.17234 0.83210 0.83670 0.84553 1.90617 1.57939 1.67973 1.31868 1.23496 1.03918 0.98825 0.88811 1.22555 1.02990 0.92017 1.01120 1.22209 1.05355 0.96609 0.85369 1.17676 1.00446 0.90728 0.92354 1.21017 0.97737 0.97663 0.92282 1.21023 1.01577 0.93069 1.01122 1.17856 0.99878 0.83882 0.90490 1.91505 1.89396 1.50621 1.80361 1.21070 1.03376 0.99963 0.92452 1.21194 0.95590 0.91297 1.00874 1.84996 1.60430 1.28548 1.22605 1.74753 1.10402 0.91821 1.21772 0.93392 0.92824 0.93130 0.87738 0.92422 0.91698 0.80911 0.84100 0.84144 0.84232 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.23 37.16 0.38 -2.83 16 2 C 0.11 2.63 5.65 -4.04 -0.02 2.60 16 3 N -0.41 -10.56 2.50 -115.77 -0.29 -10.85 16 4 C -0.33 -8.58 7.72 -15.02 -0.12 -8.70 16 5 H 0.10 2.60 6.42 -52.49 -0.34 2.27 16 6 C 0.05 1.29 4.98 -17.45 -0.09 1.20 16 7 N -0.85 -22.55 11.49 55.50 0.64 -21.91 16 8 Si 0.92 19.77 29.59 -169.99 -5.03 14.74 16 9 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 12 C 0.53 13.48 7.64 -12.17 -0.09 13.39 16 13 O -0.60 -15.98 16.61 5.33 0.09 -15.89 16 14 C 0.01 0.17 6.86 -82.64 -0.57 -0.40 16 15 C -0.16 -2.95 10.34 -38.71 -0.40 -3.35 16 16 C -0.03 -0.52 7.15 -36.22 -0.26 -0.78 16 17 C -0.01 -0.13 5.87 -104.97 -0.62 -0.75 16 18 C -0.07 -0.71 9.58 -39.20 -0.38 -1.08 16 19 C -0.15 -1.38 10.01 -39.57 -0.40 -1.78 16 20 C 0.10 0.98 7.30 -39.32 -0.29 0.69 16 21 F -0.14 -1.46 17.26 2.25 0.04 -1.42 16 22 C -0.15 -1.41 10.01 -39.57 -0.40 -1.81 16 23 C -0.07 -0.75 9.73 -39.20 -0.38 -1.13 16 24 O 0.11 2.02 11.01 16.01 0.18 2.19 16 25 N -0.29 -6.37 9.16 33.35 0.31 -6.07 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 2.61 5.61 -51.93 -0.29 2.31 16 30 H 0.06 1.40 7.54 -51.93 -0.39 1.01 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.17 2.65 7.46 -52.49 -0.39 2.26 16 33 H 0.14 1.26 7.14 -52.49 -0.37 0.88 16 34 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.37 7.95 -52.48 -0.42 0.95 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -30.12 322.99 -6.27 -36.40 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.45 Total: 2.68 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.62 Total: -4.72 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.65 Total: -38.83 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.26 Total: -13.70 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.12 -6.27 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134875607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.885 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds