Wall clock time and date at job start Tue Mar 31 2020 09:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47173 * 2 1 4 4 C 1.36783 * 120.00079 * 268.35643 * 3 2 1 5 5 H 1.08001 * 120.00528 * 140.21672 * 4 3 2 6 6 C 1.39115 * 119.99937 * 320.22040 * 4 3 2 7 7 N 1.31315 * 120.00048 * 341.02104 * 6 4 3 8 8 Si 1.86803 * 119.99877 * 161.02386 * 6 4 3 9 9 H 1.48493 * 109.47214 * 59.99723 * 8 6 4 10 10 H 1.48502 * 109.46842 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46876 * 299.99720 * 8 6 4 12 12 C 1.34777 * 120.00124 * 88.63664 * 3 2 1 13 13 O 1.21542 * 119.99884 * 354.91988 * 12 3 2 14 14 C 1.48191 * 120.00168 * 174.92015 * 12 3 2 15 15 C 1.41958 * 126.85001 * 174.38932 * 14 12 3 16 16 C 1.36706 * 103.81314 * 179.97438 * 15 14 12 17 17 C 1.47824 * 126.80703 * 180.02562 * 16 15 14 18 18 C 1.39588 * 120.11622 * 359.72905 * 17 16 15 19 19 C 1.37902 * 119.87944 * 179.74338 * 18 17 16 20 20 C 1.38590 * 120.11665 * 0.50742 * 19 18 17 21 21 F 1.35109 * 119.88228 * 179.74468 * 20 19 18 22 22 C 1.38599 * 120.24255 * 359.76329 * 20 19 18 23 23 C 1.37906 * 120.11089 * 359.97438 * 22 20 19 24 24 O 1.34479 * 106.38744 * 0.02562 * 16 15 14 25 25 N 1.20877 * 111.74825 * 359.74179 * 24 16 15 26 26 H 1.08992 * 109.47156 * 300.00332 * 1 2 3 27 27 H 1.09003 * 109.46503 * 59.99978 * 1 2 3 28 28 H 1.08995 * 109.47158 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47517 * 239.99612 * 2 1 3 30 30 H 1.09003 * 109.46503 * 120.00022 * 2 1 3 31 31 H 0.97002 * 120.00312 * 180.02562 * 7 6 4 32 32 H 1.07999 * 128.09474 * 359.94496 * 15 14 12 33 33 H 1.07997 * 120.06118 * 359.97438 * 18 17 16 34 34 H 1.08006 * 119.93807 * 180.23057 * 19 18 17 35 35 H 1.07998 * 119.94966 * 179.97438 * 22 20 19 36 36 H 1.08007 * 120.05631 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2784 2.0146 -1.1841 5 1 2.0148 3.0545 -1.3096 6 6 2.8823 1.3195 -2.2269 7 7 3.5338 0.2058 -1.9830 8 14 2.7665 1.9706 -3.9739 9 1 3.3798 3.3213 -4.0405 10 1 3.4873 1.0532 -4.8928 11 1 1.3398 2.0543 -4.3774 12 6 2.2168 2.0258 1.1669 13 8 1.9040 1.4956 2.2149 14 6 2.8164 3.3810 1.1721 15 6 2.9877 4.2318 2.2954 16 6 3.5788 5.3480 1.7724 17 6 3.9834 6.5638 2.5094 18 6 3.7652 6.6540 3.8852 19 6 4.1494 7.7883 4.5688 20 6 4.7416 8.8419 3.8906 21 9 5.1115 9.9531 4.5642 22 6 4.9555 8.7600 2.5236 23 6 4.5800 7.6280 1.8312 24 8 3.7192 5.1207 0.4544 25 7 3.2989 4.0317 0.1405 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9552 -0.2788 -2.7101 32 1 2.7144 4.0420 3.3229 33 1 3.2997 5.8354 4.4139 34 1 3.9845 7.8576 5.6340 35 1 5.4170 9.5839 1.9998 36 1 4.7474 7.5649 0.7661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134875607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:29 Heat of formation + Delta-G solvation = 0.584872 kcal Electronic energy + Delta-G solvation = -23782.605378 eV Core-core repulsion = 19956.529328 eV Total energy + Delta-G solvation = -3826.076050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.101 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.91924 -45.90798 -40.47443 -39.95662 -37.03683 -34.97930 -34.00816 -33.82226 -32.22074 -31.61437 -30.14856 -27.08183 -26.03115 -24.67042 -24.19110 -23.19241 -22.69696 -20.99237 -19.68723 -18.75467 -18.63819 -17.97922 -17.86788 -17.19909 -16.84424 -16.59448 -16.39493 -16.03833 -15.61790 -15.15126 -14.90643 -14.76733 -14.48123 -14.44215 -14.17002 -13.66522 -13.62579 -13.58511 -13.25677 -12.96099 -12.79632 -12.64405 -12.15744 -12.12783 -11.96873 -11.81999 -11.31931 -11.14825 -11.09666 -10.76288 -10.15352 -9.58739 -9.26939 -8.40361 -6.15544 -0.49066 0.23625 0.47214 1.04262 1.42561 1.44648 1.52555 1.98516 2.22854 2.36043 2.61811 2.62949 2.97656 3.20946 3.33634 3.55450 3.80150 3.89447 4.05582 4.17758 4.25021 4.26632 4.43982 4.51076 4.55450 4.70904 4.82176 4.93635 4.96873 5.00477 5.09203 5.16681 5.18907 5.35973 5.39379 5.47749 5.79800 5.86425 6.34459 6.97266 7.22929 7.43404 7.80280 8.62403 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.003585 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.856240 B = 7807.452507 C = 8873.724867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.107 3.893 3 N -0.421 5.421 4 C -0.344 4.344 5 H 0.095 0.905 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.981 3.019 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.263 1.263 12 C 0.512 3.488 13 O -0.620 6.620 14 C -0.028 4.028 15 C -0.176 4.176 16 C 0.000 4.000 17 C -0.038 4.038 18 C -0.062 4.062 19 C -0.146 4.146 20 C 0.099 3.901 21 F -0.141 7.141 22 C -0.147 4.147 23 C -0.068 4.068 24 O 0.123 5.877 25 N -0.318 5.318 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.276 0.724 32 H 0.195 0.805 33 H 0.154 0.846 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 15.164 7.078 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.016 4.016 3 N -0.138 5.138 4 C -0.472 4.472 5 H 0.112 0.888 6 C -0.192 4.192 7 N -0.522 5.522 8 Si 0.803 3.197 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.187 1.187 12 C 0.301 3.699 13 O -0.508 6.508 14 C -0.185 4.185 15 C -0.198 4.198 16 C -0.063 4.063 17 C -0.039 4.039 18 C -0.081 4.081 19 C -0.164 4.164 20 C 0.080 3.920 21 F -0.120 7.120 22 C -0.166 4.166 23 C -0.087 4.087 24 O 0.044 5.956 25 N -0.017 5.017 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.212 0.788 33 H 0.172 0.828 34 H 0.183 0.817 35 H 0.181 0.819 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.673 14.362 6.172 15.722 hybrid contribution 0.035 -0.073 0.034 0.088 sum 1.708 14.289 6.206 15.672 Atomic orbital electron populations 1.21928 0.95004 1.02351 1.00894 1.21472 0.94436 0.83442 1.02245 1.43662 1.52858 1.12614 1.04618 1.19727 1.40187 0.97841 0.89476 0.88774 1.26244 0.92669 0.96144 1.04113 1.69959 1.29673 1.17976 1.34607 0.85186 0.79125 0.78561 0.76789 1.19153 1.20061 1.18720 1.17712 0.82917 0.84974 0.84253 1.90563 1.58857 1.69020 1.32387 1.23384 1.05637 0.98496 0.90933 1.22716 1.04166 0.91784 1.01121 1.22678 1.02670 0.97035 0.83944 1.17724 1.03145 0.89996 0.93081 1.21191 0.97007 0.98400 0.91460 1.21259 1.00648 0.92200 1.02323 1.18081 0.99249 0.83853 0.90817 1.91512 1.89330 1.50726 1.80409 1.21274 1.02816 1.00084 0.92383 1.21319 0.94858 0.91067 1.01413 1.84922 1.59416 1.27139 1.24101 1.74700 1.11447 0.92957 1.22547 0.94202 0.92881 0.89855 0.88883 0.93831 0.91387 0.78833 0.82807 0.81716 0.81941 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 10.23 71.98 0.74 -5.14 16 2 C 0.11 5.27 5.65 86.38 0.49 5.75 16 3 N -0.42 -22.57 2.50 -638.47 -1.59 -24.17 16 4 C -0.34 -18.36 7.72 84.13 0.65 -17.71 16 5 H 0.09 5.05 6.42 -2.91 -0.02 5.03 16 6 C 0.01 0.66 4.98 84.98 0.42 1.09 16 7 N -0.89 -47.66 11.49 21.69 0.25 -47.41 16 8 Si 0.98 40.56 29.59 68.60 2.03 42.59 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 12 C 0.51 27.26 7.64 86.89 0.66 27.92 16 13 O -0.62 -34.27 16.61 -3.85 -0.06 -34.34 16 14 C -0.03 -1.30 6.86 42.81 0.29 -1.01 16 15 C -0.18 -6.26 10.34 22.83 0.24 -6.02 16 16 C 0.00 -0.01 7.15 24.45 0.17 0.16 16 17 C -0.04 -0.85 5.87 -20.09 -0.12 -0.97 16 18 C -0.06 -1.11 9.58 22.52 0.22 -0.90 16 19 C -0.15 -2.21 10.01 22.27 0.22 -1.99 16 20 C 0.10 1.65 7.30 22.44 0.16 1.82 16 21 F -0.14 -2.49 17.26 44.97 0.78 -1.72 16 22 C -0.15 -2.29 10.01 22.28 0.22 -2.07 16 23 C -0.07 -1.27 9.73 22.52 0.22 -1.05 16 24 O 0.12 4.48 11.01 67.46 0.74 5.23 16 25 N -0.32 -14.39 9.16 -48.98 -0.45 -14.84 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 2.80 8.14 -2.39 -0.02 2.79 16 29 H 0.09 4.79 5.61 -2.39 -0.01 4.77 16 30 H 0.04 2.21 7.54 -2.39 -0.02 2.19 16 31 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.19 5.82 7.46 -2.91 -0.02 5.80 16 33 H 0.15 2.33 7.14 -2.91 -0.02 2.31 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.15 2.54 7.95 -2.91 -0.02 2.51 16 Total: -1.00 -66.73 322.99 7.41 -59.32 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.13 Total: 15.45 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 4.59 Total: -0.11 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.79 Total: -86.42 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: 0.68 Total: -29.11 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -66.73 7.41 -59.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134875607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.901 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds