Wall clock time and date at job start Tue Mar 31 2020 08:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 C 1.47200 * 109.47226 * 239.99447 * 2 1 3 5 5 N 2.60797 * 109.47257 * 239.99504 * 2 1 3 6 6 C 1.53007 * 109.46622 * 119.99823 * 2 1 3 7 7 N 1.46498 * 109.46662 * 299.99858 * 6 2 1 8 8 C 1.34783 * 119.99450 * 180.02562 * 7 6 2 9 9 O 1.21606 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.47433 * 119.99777 * 179.97438 * 8 7 6 11 11 C 1.39678 * 120.21285 * 359.97438 * 10 8 7 12 12 C 1.37809 * 119.93418 * 180.02562 * 11 10 8 13 13 C 1.38660 * 120.38295 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43889 * 0.02562 * 13 12 11 15 15 C 1.39110 * 120.04977 * 359.97438 * 14 13 12 16 16 S 1.76195 * 120.19106 * 180.02562 * 15 14 13 17 17 C 1.76205 * 99.99901 * 6.85682 * 16 15 14 18 18 H 1.08005 * 119.99976 * 5.65159 * 17 16 15 19 19 C 1.38804 * 120.00248 * 185.65626 * 17 16 15 20 20 N 1.31558 * 119.99610 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00279 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46991 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47417 * 119.99708 * 21 19 17 24 24 H 1.48506 * 109.47217 * 240.00232 * 21 19 17 25 25 H 1.09001 * 109.47344 * 300.00490 * 1 2 3 26 26 H 1.09009 * 109.46464 * 60.00302 * 1 2 3 27 27 H 1.08995 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46871 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47066 * 299.99117 * 3 2 1 30 30 H 1.08992 * 109.47476 * 59.99601 * 3 2 1 31 31 H 1.09000 * 109.47129 * 180.02562 * 6 2 1 32 32 H 1.09003 * 109.47146 * 59.99823 * 6 2 1 33 33 H 0.97003 * 120.00826 * 359.97438 * 7 6 2 34 34 H 1.07994 * 120.03669 * 0.27820 * 11 10 8 35 35 H 1.08006 * 119.80802 * 179.97438 * 12 11 10 36 36 H 1.08007 * 119.77539 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.97290 * 179.97438 * 14 13 12 38 38 H 0.96997 * 119.99773 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0399 -0.7213 1.2494 7 7 1.5515 -0.0305 2.4454 8 6 1.8775 -0.4907 3.6696 9 8 2.5773 -1.4789 3.7813 10 6 1.3864 0.2048 4.8733 11 6 0.5837 1.3411 4.7502 12 6 0.1283 1.9870 5.8792 13 6 0.4627 1.5158 7.1396 14 6 1.2552 0.3959 7.2793 15 6 1.7248 -0.2702 6.1519 16 16 2.7370 -1.7018 6.3261 17 6 2.6465 -1.9301 8.0709 18 1 1.9933 -1.3071 8.6639 19 6 3.4148 -2.9106 8.6834 20 7 4.2101 -3.6698 7.9610 21 14 3.3183 -3.1531 10.5330 22 1 2.3567 -2.1799 11.1103 23 1 2.8618 -4.5351 10.8280 24 1 4.6601 -2.9367 11.1313 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.1299 -0.7209 1.2497 32 1 1.6765 -1.7489 1.2494 33 1 0.9942 0.7584 2.3564 34 1 0.3167 1.7109 3.7713 35 1 -0.4920 2.8658 5.7816 36 1 0.1001 2.0294 8.0179 37 1 1.5114 0.0356 8.2647 38 1 4.7472 -4.3548 8.3890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701316976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:50 Heat of formation + Delta-G solvation = 12.776353 kcal Electronic energy + Delta-G solvation = -21528.426004 eV Core-core repulsion = 18269.091793 eV Total energy + Delta-G solvation = -3259.334211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88957 -38.42233 -37.31564 -35.62687 -33.05120 -32.77608 -30.59458 -30.30563 -27.77876 -26.81687 -25.84994 -23.70506 -22.21947 -21.78655 -20.17355 -18.54501 -17.46967 -16.78956 -15.87535 -15.73350 -15.42468 -15.21557 -14.74507 -14.35070 -14.06257 -14.02005 -13.74514 -13.68048 -13.21094 -13.06915 -12.99797 -12.78732 -12.40057 -12.31470 -11.89293 -11.88126 -11.61974 -11.36330 -11.30521 -11.23209 -11.16625 -10.93217 -10.34618 -9.85144 -9.70632 -9.53855 -8.89866 -8.76220 -8.37347 -8.10246 -6.56695 -6.48544 -4.19327 1.49139 1.98467 2.43544 2.51298 3.09086 3.10647 3.19252 3.23461 3.40664 3.46570 3.75577 4.04526 4.30575 4.40449 4.47359 4.51293 4.92826 5.09201 5.18340 5.20822 5.32557 5.33076 5.33360 5.46260 5.54842 5.56995 5.67565 5.76594 5.83432 5.94005 6.07859 6.35112 6.55109 6.60186 6.80461 6.98990 7.10411 7.27925 7.42336 7.56016 7.78721 8.14267 8.71229 8.98011 10.54744 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.003738 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.985080 B = 7488.128178 C = 8751.412831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.023 3.977 3 C -0.144 4.144 4 C 0.220 3.780 5 N -0.427 5.427 6 C 0.135 3.865 7 N -0.736 5.736 8 C 0.554 3.446 9 O -0.506 6.506 10 C -0.178 4.178 11 C -0.061 4.061 12 C -0.187 4.187 13 C -0.076 4.076 14 C -0.152 4.152 15 C -0.057 4.057 16 S 0.186 5.814 17 C -0.596 4.596 18 H 0.092 0.908 19 C 0.083 3.917 20 N -0.857 5.857 21 Si 0.919 3.081 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.396 0.604 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 12.164 -10.381 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 C -0.202 4.202 4 C -0.099 4.099 5 N -0.101 5.101 6 C 0.010 3.990 7 N -0.392 5.392 8 C 0.343 3.657 9 O -0.382 6.382 10 C -0.193 4.193 11 C -0.081 4.081 12 C -0.211 4.211 13 C -0.099 4.099 14 C -0.178 4.178 15 C -0.177 4.177 16 S 0.451 5.549 17 C -0.743 4.743 18 H 0.109 0.891 19 C -0.128 4.128 20 N -0.490 5.490 21 Si 0.745 3.255 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.232 0.768 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.466 9.429 -12.427 16.886 hybrid contribution -1.153 1.245 2.369 2.914 sum -7.618 10.674 -10.058 16.527 Atomic orbital electron populations 1.21933 0.90862 1.03908 1.03507 1.18466 0.97380 0.95316 0.86885 1.21930 1.02561 0.92209 1.03508 1.28758 0.93378 0.93532 0.94270 1.81231 1.08564 1.08782 1.11558 1.21162 0.99989 0.96124 0.81747 1.45776 1.55903 1.32722 1.04849 1.18298 0.80514 0.84196 0.82677 1.90806 1.36647 1.25379 1.85382 1.19046 1.08160 1.00627 0.91481 1.20865 0.95658 0.93916 0.97655 1.20633 1.05741 1.02192 0.92574 1.21092 0.96323 0.95581 0.96877 1.21443 1.00575 0.96637 0.99101 1.23089 0.99552 1.01151 0.93895 1.84763 1.46919 1.18024 1.05198 1.24101 1.30570 1.23387 0.96193 0.89056 1.25105 0.93448 0.94265 0.99958 1.69984 1.23534 1.18929 1.36523 0.86097 0.78472 0.78577 0.82380 1.19131 1.20221 1.20231 0.90227 0.91323 0.91133 0.91135 0.91323 0.90226 0.90491 0.90484 0.76776 0.87206 0.87064 0.87041 0.84386 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.26 37.16 0.31 -0.52 16 2 C 0.02 0.18 0.70 -157.29 -0.11 0.07 16 3 C -0.14 -0.83 8.26 37.16 0.31 -0.52 16 4 C 0.22 2.25 13.86 -20.76 -0.29 1.97 16 5 N -0.43 -5.59 18.54 42.15 0.78 -4.81 16 6 C 0.14 1.44 4.52 -4.04 -0.02 1.42 16 7 N -0.74 -8.59 4.91 -61.38 -0.30 -8.89 16 8 C 0.55 9.71 7.75 -12.51 -0.10 9.61 16 9 O -0.51 -11.12 13.77 5.27 0.07 -11.05 16 10 C -0.18 -3.23 5.89 -104.75 -0.62 -3.85 16 11 C -0.06 -0.85 9.53 -39.20 -0.37 -1.23 16 12 C -0.19 -2.62 10.02 -39.58 -0.40 -3.01 16 13 C -0.08 -1.23 10.03 -39.55 -0.40 -1.62 16 14 C -0.15 -3.04 9.22 -39.38 -0.36 -3.41 16 15 C -0.06 -1.24 6.14 -38.39 -0.24 -1.47 16 16 S 0.19 4.85 18.56 -107.50 -2.00 2.85 16 17 C -0.60 -16.08 9.00 30.94 0.28 -15.80 16 18 H 0.09 2.34 4.98 -52.48 -0.26 2.07 16 19 C 0.08 2.25 5.49 -17.46 -0.10 2.15 16 20 N -0.86 -24.38 13.22 55.49 0.73 -23.65 16 21 Si 0.92 20.36 29.55 -169.99 -5.02 15.33 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H 0.08 0.37 6.86 -51.93 -0.36 0.01 16 26 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.37 6.86 -51.93 -0.36 0.01 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.40 3.30 4.19 -40.82 -0.17 3.13 16 34 H 0.11 1.05 6.40 -52.49 -0.34 0.72 16 35 H 0.11 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.14 2.90 5.04 -52.49 -0.26 2.64 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -32.81 336.15 -7.03 -39.84 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.26 Total: 1.52 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.10 Total: -16.22 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 1.21 Total: -37.34 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -2.00 Total: 2.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.81 -7.03 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.620 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds