Wall clock time and date at job start Tue Mar 31 2020 09:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 N 1.46506 * 109.47247 * 119.99957 * 2 1 3 5 5 C 1.46499 * 119.99933 * 294.52771 * 4 2 1 6 6 C 1.50701 * 109.47141 * 278.47256 * 5 4 2 7 7 H 1.07999 * 119.99620 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99923 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00345 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99967 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46986 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47177 * 120.00093 * 10 8 6 13 13 H 1.48503 * 109.46823 * 240.00027 * 10 8 6 14 14 C 1.34775 * 119.99838 * 114.52370 * 4 2 1 15 15 O 1.21575 * 120.00409 * 6.50932 * 14 4 2 16 16 C 1.47660 * 119.99827 * 186.50917 * 14 4 2 17 17 C 1.40163 * 119.85560 * 330.57844 * 16 14 4 18 18 C 1.36218 * 120.08073 * 179.97438 * 17 16 14 19 19 C 1.39578 * 120.43403 * 0.02562 * 18 17 16 20 20 S 1.76152 * 131.53701 * 179.97438 * 19 18 17 21 21 C 1.70623 * 90.85785 * 179.97438 * 20 19 18 22 22 N 1.27849 * 111.59026 * 0.02562 * 21 20 19 23 23 C 1.34740 * 117.83751 * 359.97438 * 22 21 20 24 24 C 1.38711 * 119.86023 * 150.56888 * 16 14 4 25 25 H 1.09000 * 109.47360 * 299.99867 * 1 2 3 26 26 H 1.08994 * 109.46994 * 60.00080 * 1 2 3 27 27 H 1.09006 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47360 * 240.00133 * 2 1 3 29 29 H 1.08998 * 109.47373 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47229 * 300.00330 * 3 2 1 31 31 H 1.09000 * 109.46866 * 59.99830 * 3 2 1 32 32 H 1.09001 * 109.46968 * 38.47250 * 5 4 2 33 33 H 1.09001 * 109.46748 * 158.47117 * 5 4 2 34 34 H 0.97005 * 119.99977 * 179.97438 * 9 8 6 35 35 H 1.08006 * 119.96193 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.78332 * 180.28476 * 18 17 16 37 37 H 1.08001 * 124.20129 * 180.02562 * 21 20 19 38 38 H 1.08006 * 119.97568 * 0.03542 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7660 -0.1241 2.5234 6 6 2.7834 0.9492 2.8133 7 1 3.5418 1.1859 2.0818 8 6 2.7453 1.6296 4.0118 9 7 1.8207 1.3424 4.9019 10 14 4.0060 2.9605 4.3708 11 1 4.9307 3.0908 3.2161 12 1 3.3107 4.2530 4.5970 13 1 4.7793 2.5952 5.5848 14 6 2.6997 -1.8472 1.0756 15 8 3.0121 -2.2567 -0.0256 16 6 3.0669 -2.6169 2.2810 17 6 3.2894 -1.9502 3.4937 18 6 3.6278 -2.6558 4.6087 19 6 3.7563 -4.0446 4.5545 20 16 4.1729 -5.2282 5.7909 21 6 4.0306 -6.4978 4.6599 22 7 3.7091 -6.0622 3.5017 23 6 3.5388 -4.7338 3.3540 24 6 3.1898 -3.9967 2.2085 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.7652 0.3072 2.5501 33 1 1.8430 -0.9102 3.2746 34 1 1.7942 1.8209 5.7453 35 1 3.1916 -0.8758 3.5444 36 1 3.7936 -2.1377 5.5416 37 1 4.1920 -7.5398 4.8934 38 1 3.0176 -4.5052 1.2714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931325708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:53 Heat of formation + Delta-G solvation = 44.748618 kcal Electronic energy + Delta-G solvation = -22773.708078 eV Core-core repulsion = 19515.760288 eV Total energy + Delta-G solvation = -3257.947790 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.43671 -39.20960 -36.41365 -35.99012 -33.25550 -31.76732 -30.73810 -29.33049 -27.69685 -26.57769 -24.87638 -23.76377 -23.17067 -21.72239 -20.52706 -18.79044 -17.94732 -17.04816 -16.79521 -16.06844 -15.44587 -15.23389 -14.67919 -14.60866 -14.30644 -13.89641 -13.62641 -13.43426 -13.27101 -12.69741 -12.61350 -12.45229 -12.21836 -11.81992 -11.57481 -11.47946 -11.12735 -11.07633 -10.86533 -10.80348 -10.47778 -10.02529 -9.94561 -9.90634 -9.69953 -9.55252 -9.20570 -8.80297 -8.29803 -7.94900 -7.74584 -6.37811 -4.46212 0.65521 1.13368 1.38756 1.83643 2.56924 3.11349 3.21742 3.24923 3.33437 3.66491 4.11654 4.18370 4.24644 4.85945 4.92576 5.09499 5.32448 5.50402 5.55417 5.57807 5.68420 5.82209 5.91808 6.10156 6.13200 6.17637 6.32798 6.37085 6.43516 6.64115 6.65709 6.75407 6.76749 7.05856 7.11094 7.12439 7.44237 7.58708 7.69148 7.83107 8.22276 8.62625 8.86286 9.21156 10.66240 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.005656 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.108975 B = 4949.450418 C = 6559.902975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 C -0.153 4.153 4 N -0.581 5.581 5 C 0.203 3.797 6 C -0.541 4.541 7 H 0.071 0.929 8 C 0.068 3.932 9 N -0.880 5.880 10 Si 0.894 3.106 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.559 3.441 15 O -0.567 6.567 16 C -0.114 4.114 17 C -0.076 4.076 18 C -0.092 4.092 19 C -0.152 4.152 20 S 0.075 5.925 21 C 0.050 3.950 22 N -0.455 5.455 23 C 0.048 3.952 24 C -0.011 4.011 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.269 0.731 35 H 0.217 0.783 36 H 0.134 0.866 37 H 0.200 0.800 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -7.296 1.207 7.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 C -0.211 4.211 4 N -0.310 5.310 5 C 0.084 3.916 6 C -0.579 4.579 7 H 0.089 0.911 8 C -0.137 4.137 9 N -0.517 5.517 10 Si 0.721 3.279 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.206 1.206 14 C 0.347 3.653 15 O -0.449 6.449 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.271 4.271 20 S 0.328 5.672 21 C -0.256 4.256 22 N -0.167 5.167 23 C -0.070 4.070 24 C -0.032 4.032 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.232 0.768 36 H 0.152 0.848 37 H 0.216 0.784 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.166 -7.877 1.425 8.090 hybrid contribution 0.369 1.027 -0.233 1.116 sum 1.535 -6.851 1.192 7.121 Atomic orbital electron populations 1.22125 0.95804 1.01589 1.02148 1.20882 0.93378 0.93768 0.88560 1.22162 1.01470 0.95357 1.02128 1.48132 1.52507 1.21007 1.09373 1.20364 0.97850 0.94987 0.78426 1.21578 1.14751 1.19228 1.02341 0.91051 1.25002 0.95801 0.96971 0.95900 1.69941 1.32679 1.41115 1.07921 0.86482 0.81286 0.81491 0.78668 1.19378 1.20668 1.20615 1.18057 0.78206 0.81174 0.87853 1.90687 1.56097 1.70723 1.27370 1.19834 1.03987 0.93013 0.95136 1.23352 0.90037 1.06469 0.89772 1.20156 1.01629 0.89328 1.00375 1.24104 1.07147 0.99677 0.96161 1.83871 1.70467 0.98516 1.14343 1.27892 1.02252 1.04414 0.90998 1.66140 1.13988 1.13406 1.23158 1.18945 1.06702 0.87199 0.94190 1.20606 0.94641 0.91923 0.96072 0.91717 0.92216 0.93083 0.89564 0.92641 0.93490 0.89880 0.94360 0.91633 0.92160 0.76768 0.84848 0.78384 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.25 37.16 0.34 -2.15 16 2 C 0.14 2.50 3.25 -67.93 -0.22 2.28 16 3 C -0.15 -2.67 8.04 37.16 0.30 -2.37 16 4 N -0.58 -11.86 2.44 -168.64 -0.41 -12.27 16 5 C 0.20 4.41 4.20 -5.19 -0.02 4.39 16 6 C -0.54 -12.45 5.51 -34.44 -0.19 -12.64 16 7 H 0.07 1.69 6.63 -52.49 -0.35 1.35 16 8 C 0.07 1.61 5.33 -17.82 -0.09 1.51 16 9 N -0.88 -21.65 13.29 55.43 0.74 -20.91 16 10 Si 0.89 18.84 29.54 -169.99 -5.02 13.82 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 C 0.56 11.90 7.45 -12.41 -0.09 11.81 16 15 O -0.57 -13.04 16.01 5.30 0.08 -12.96 16 16 C -0.11 -2.28 5.58 -105.15 -0.59 -2.86 16 17 C -0.08 -1.49 7.42 -39.59 -0.29 -1.79 16 18 C -0.09 -1.63 9.99 -39.81 -0.40 -2.03 16 19 C -0.15 -2.57 6.57 -38.38 -0.25 -2.82 16 20 S 0.08 0.97 23.17 -107.50 -2.49 -1.52 16 21 C 0.05 0.62 12.09 51.10 0.62 1.24 16 22 N -0.45 -7.37 10.57 -13.03 -0.14 -7.51 16 23 C 0.05 0.85 6.99 -84.98 -0.59 0.26 16 24 C -0.01 -0.20 9.64 -38.51 -0.37 -0.57 16 25 H 0.06 1.07 6.91 -51.93 -0.36 0.71 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.61 6.92 -51.93 -0.36 1.25 16 29 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.58 6.53 -51.93 -0.34 1.24 16 32 H 0.04 0.88 6.76 -51.93 -0.35 0.53 16 33 H 0.07 1.48 3.98 -52.62 -0.21 1.27 16 34 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 35 H 0.22 4.64 2.97 -52.48 -0.16 4.49 16 36 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.14 2.53 7.88 -52.48 -0.41 2.12 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -26.74 322.59 -8.41 -35.15 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.17 Total: 7.08 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.86 Total: -5.74 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.19 Total: -40.70 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.74 -8.41 -35.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931325708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.895 kcal (2) G-P(sol) polarization free energy of solvation -26.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds