Wall clock time and date at job start Tue Mar 31 2020 09:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 N 1.46506 * 109.47247 * 119.99957 * 2 1 3 5 5 C 1.46499 * 119.99933 * 294.52771 * 4 2 1 6 6 C 1.50701 * 109.47141 * 278.47256 * 5 4 2 7 7 H 1.07999 * 119.99620 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99923 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00345 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99967 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46986 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47177 * 120.00093 * 10 8 6 13 13 H 1.48503 * 109.46823 * 240.00027 * 10 8 6 14 14 C 1.34775 * 119.99838 * 114.52370 * 4 2 1 15 15 O 1.21575 * 120.00409 * 6.50932 * 14 4 2 16 16 C 1.47660 * 119.99827 * 186.50917 * 14 4 2 17 17 C 1.40163 * 119.85560 * 330.57844 * 16 14 4 18 18 C 1.36218 * 120.08073 * 179.97438 * 17 16 14 19 19 C 1.39578 * 120.43403 * 0.02562 * 18 17 16 20 20 S 1.76152 * 131.53701 * 179.97438 * 19 18 17 21 21 C 1.70623 * 90.85785 * 179.97438 * 20 19 18 22 22 N 1.27849 * 111.59026 * 0.02562 * 21 20 19 23 23 C 1.34740 * 117.83751 * 359.97438 * 22 21 20 24 24 C 1.38711 * 119.86023 * 150.56888 * 16 14 4 25 25 H 1.09000 * 109.47360 * 299.99867 * 1 2 3 26 26 H 1.08994 * 109.46994 * 60.00080 * 1 2 3 27 27 H 1.09006 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47360 * 240.00133 * 2 1 3 29 29 H 1.08998 * 109.47373 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47229 * 300.00330 * 3 2 1 31 31 H 1.09000 * 109.46866 * 59.99830 * 3 2 1 32 32 H 1.09001 * 109.46968 * 38.47250 * 5 4 2 33 33 H 1.09001 * 109.46748 * 158.47117 * 5 4 2 34 34 H 0.97005 * 119.99977 * 179.97438 * 9 8 6 35 35 H 1.08006 * 119.96193 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.78332 * 180.28476 * 18 17 16 37 37 H 1.08001 * 124.20129 * 180.02562 * 21 20 19 38 38 H 1.08006 * 119.97568 * 0.03542 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7660 -0.1241 2.5234 6 6 2.7834 0.9492 2.8133 7 1 3.5418 1.1859 2.0818 8 6 2.7453 1.6296 4.0118 9 7 1.8207 1.3424 4.9019 10 14 4.0060 2.9605 4.3708 11 1 4.9307 3.0908 3.2161 12 1 3.3107 4.2530 4.5970 13 1 4.7793 2.5952 5.5848 14 6 2.6997 -1.8472 1.0756 15 8 3.0121 -2.2567 -0.0256 16 6 3.0669 -2.6169 2.2810 17 6 3.2894 -1.9502 3.4937 18 6 3.6278 -2.6558 4.6087 19 6 3.7563 -4.0446 4.5545 20 16 4.1729 -5.2282 5.7909 21 6 4.0306 -6.4978 4.6599 22 7 3.7091 -6.0622 3.5017 23 6 3.5388 -4.7338 3.3540 24 6 3.1898 -3.9967 2.2085 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.7652 0.3072 2.5501 33 1 1.8430 -0.9102 3.2746 34 1 1.7942 1.8209 5.7453 35 1 3.1916 -0.8758 3.5444 36 1 3.7936 -2.1377 5.5416 37 1 4.1920 -7.5398 4.8934 38 1 3.0176 -4.5052 1.2714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931325708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:53 Heat of formation + Delta-G solvation = 30.471935 kcal Electronic energy + Delta-G solvation = -22774.327161 eV Core-core repulsion = 19515.760288 eV Total energy + Delta-G solvation = -3258.566873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87396 -40.66573 -37.78141 -37.64020 -34.96807 -33.33607 -32.15953 -30.69584 -29.44263 -27.96615 -26.16056 -25.15649 -24.92221 -23.11327 -21.93796 -20.26678 -19.29415 -18.60309 -18.48067 -17.54903 -16.95137 -16.65872 -16.31504 -16.10279 -15.68391 -15.33257 -14.98836 -14.73177 -14.70430 -14.30668 -14.21858 -13.92651 -13.69205 -13.33568 -12.96830 -12.92242 -12.73820 -12.70157 -12.33073 -12.19113 -12.04578 -11.64170 -11.50395 -11.42510 -11.19430 -10.87200 -10.70182 -10.56790 -9.69830 -9.52853 -9.08896 -8.19822 -6.32238 -0.59247 -0.29887 0.23277 0.69557 1.27400 1.42231 1.48481 1.56591 1.78385 2.14308 2.42217 2.68270 3.03397 3.09417 3.53194 3.62007 4.06983 4.12470 4.17534 4.26410 4.28830 4.43426 4.55633 4.67818 4.70627 4.84559 4.91626 5.02095 5.02955 5.09314 5.17154 5.25757 5.32396 5.43721 5.57005 5.63426 5.72759 5.84047 6.03083 6.50841 6.53893 6.80839 7.18376 7.37993 8.84329 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.005656 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.108975 B = 4949.450418 C = 6559.902975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 C -0.143 4.143 4 N -0.581 5.581 5 C 0.216 3.784 6 C -0.536 4.536 7 H 0.060 0.940 8 C 0.036 3.964 9 N -0.905 5.905 10 Si 0.945 3.055 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.553 3.447 15 O -0.592 6.592 16 C -0.127 4.127 17 C -0.097 4.097 18 C -0.086 4.086 19 C -0.178 4.178 20 S 0.146 5.854 21 C 0.072 3.928 22 N -0.492 5.492 23 C 0.046 3.954 24 C -0.021 4.021 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.270 0.730 35 H 0.196 0.804 36 H 0.145 0.855 37 H 0.250 0.750 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 -8.658 2.469 9.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.201 4.201 4 N -0.310 5.310 5 C 0.097 3.903 6 C -0.574 4.574 7 H 0.078 0.922 8 C -0.167 4.167 9 N -0.543 5.543 10 Si 0.771 3.229 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.342 3.658 15 O -0.476 6.476 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.297 4.297 20 S 0.400 5.600 21 C -0.232 4.232 22 N -0.205 5.205 23 C -0.073 4.073 24 C -0.042 4.042 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.212 0.788 36 H 0.163 0.837 37 H 0.266 0.734 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.713 -9.223 2.699 9.761 hybrid contribution 0.250 1.254 -0.524 1.382 sum 1.963 -7.970 2.174 8.491 Atomic orbital electron populations 1.22048 0.93719 1.01769 1.03153 1.21138 0.95087 0.93840 0.87467 1.22052 1.00298 0.94931 1.02814 1.48213 1.52167 1.20925 1.09660 1.20123 0.96598 0.94546 0.79064 1.21560 1.14463 1.19349 1.02047 0.92207 1.25490 0.97014 0.98393 0.95762 1.70007 1.33899 1.42086 1.08282 0.85698 0.79480 0.79524 0.78218 1.19798 1.20585 1.20284 1.18359 0.77956 0.81362 0.88117 1.90650 1.57268 1.71354 1.28300 1.19735 1.05354 0.93512 0.94699 1.23017 0.92511 1.05589 0.90647 1.20216 1.00599 0.90097 1.00000 1.24401 1.07214 1.00100 0.98029 1.83707 1.68530 0.96066 1.11715 1.28862 0.98056 1.06595 0.89728 1.66227 1.16845 1.12310 1.25077 1.19069 1.05862 0.88319 0.94045 1.20591 0.95334 0.91589 0.96726 0.92723 0.89090 0.93322 0.90063 0.94314 0.90153 0.91714 0.95864 0.91979 0.92050 0.78800 0.83720 0.73446 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.25 71.98 0.67 -3.98 16 2 C 0.13 4.70 3.25 44.99 0.15 4.85 16 3 C -0.14 -5.01 8.04 71.98 0.58 -4.43 16 4 N -0.58 -24.67 2.44 -805.74 -1.96 -26.64 16 5 C 0.22 9.80 4.20 85.63 0.36 10.16 16 6 C -0.54 -25.42 5.51 25.60 0.14 -25.28 16 7 H 0.06 2.94 6.63 -2.91 -0.02 2.92 16 8 C 0.04 1.72 5.33 84.65 0.45 2.17 16 9 N -0.90 -45.14 13.29 21.44 0.28 -44.86 16 10 Si 0.94 38.94 29.54 68.60 2.03 40.97 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 14 C 0.55 24.60 7.45 86.73 0.65 25.25 16 15 O -0.59 -28.31 16.01 -3.95 -0.06 -28.37 16 16 C -0.13 -5.29 5.58 -20.21 -0.11 -5.40 16 17 C -0.10 -3.95 7.42 22.27 0.17 -3.78 16 18 C -0.09 -3.07 9.99 22.12 0.22 -2.85 16 19 C -0.18 -5.78 6.57 23.05 0.15 -5.62 16 20 S 0.15 3.20 23.17 -56.49 -1.31 1.89 16 21 C 0.07 1.50 12.09 130.82 1.58 3.08 16 22 N -0.49 -14.82 10.57 -194.91 -2.06 -16.88 16 23 C 0.05 1.60 6.99 39.74 0.28 1.88 16 24 C -0.02 -0.80 9.64 22.96 0.22 -0.57 16 25 H 0.05 1.81 6.91 -2.39 -0.02 1.79 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.08 3.09 6.92 -2.39 -0.02 3.08 16 29 H 0.04 1.45 7.53 -2.39 -0.02 1.43 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 2.50 6.53 -2.39 -0.02 2.49 16 32 H 0.02 1.12 6.76 -2.39 -0.02 1.10 16 33 H 0.06 2.93 3.98 -3.04 -0.01 2.92 16 34 H 0.27 12.83 8.31 -92.70 -0.77 12.06 16 35 H 0.20 8.76 2.97 -2.91 -0.01 8.75 16 36 H 0.15 4.66 8.06 -2.91 -0.02 4.63 16 37 H 0.25 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.14 5.15 7.88 -2.91 -0.02 5.13 16 Total: -1.00 -59.20 322.59 3.51 -55.70 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 1.10 Total: 22.74 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 5.49 Total: -4.54 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -3.74 Total: -88.38 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.06 Total: -28.37 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.31 Total: 1.89 kcal Total: -59.20 3.51 -55.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931325708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.167 kcal (2) G-P(sol) polarization free energy of solvation -59.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds