Wall clock time and date at job start Tue Mar 31 2020 08:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39628 * 120.14303 * 80.55566 * 3 2 1 5 5 C 1.38047 * 119.83173 * 180.02562 * 4 3 2 6 6 Cl 1.73597 * 119.94099 * 180.02562 * 5 4 3 7 7 C 1.38505 * 120.12476 * 359.97438 * 5 4 3 8 8 C 1.38319 * 120.28830 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.91306 * 180.02562 * 8 7 5 10 10 N 1.46901 * 109.46950 * 89.99822 * 9 8 7 11 11 C 1.46843 * 111.00070 * 294.21148 * 10 9 8 12 12 C 1.53043 * 109.52411 * 174.16211 * 11 10 9 13 13 C 1.53116 * 109.27809 * 59.17440 * 12 11 10 14 14 C 1.50709 * 109.57604 * 182.41130 * 13 12 11 15 15 H 1.07995 * 119.99857 * 119.71238 * 14 13 12 16 16 C 1.37875 * 119.99638 * 299.72107 * 14 13 12 17 17 N 1.31516 * 120.00035 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00195 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46836 * 90.00854 * 18 16 14 20 20 H 1.48502 * 109.47274 * 210.00050 * 18 16 14 21 21 H 1.48491 * 109.47592 * 330.00635 * 18 16 14 22 22 C 1.53124 * 109.16430 * 302.34631 * 13 12 11 23 23 C 1.46854 * 111.00177 * 169.99718 * 10 9 8 24 24 C 1.37972 * 120.16934 * 359.71763 * 8 7 5 25 25 H 1.07998 * 120.08852 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.85447 * 179.97438 * 7 5 4 27 27 H 1.08999 * 109.47085 * 209.99685 * 9 8 7 28 28 H 1.09000 * 109.47576 * 329.99986 * 9 8 7 29 29 H 1.09005 * 109.45869 * 294.17032 * 11 10 9 30 30 H 1.08996 * 109.46997 * 54.14527 * 11 10 9 31 31 H 1.08996 * 109.50127 * 299.23950 * 12 11 10 32 32 H 1.08994 * 109.53845 * 179.13873 * 12 11 10 33 33 H 1.08997 * 109.52373 * 62.25673 * 13 12 11 34 34 H 0.96996 * 120.00743 * 179.97438 * 17 16 14 35 35 H 1.08997 * 109.50177 * 297.71534 * 22 13 12 36 36 H 1.08997 * 109.53434 * 177.61095 * 22 13 12 37 37 H 1.08998 * 109.45856 * 305.85898 * 23 10 9 38 38 H 1.09004 * 109.45886 * 65.83420 * 23 10 9 39 39 H 1.08002 * 120.06603 * 180.30421 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -0.1972 -1.1911 5 6 4.6497 -0.1959 -1.1836 6 17 5.5244 -0.4409 -2.6630 7 6 5.3382 0.0016 0.0018 8 6 4.6486 0.1981 1.1847 9 6 5.4063 0.4128 2.4695 10 7 5.6514 1.8487 2.6594 11 6 6.5533 2.3700 1.6245 12 6 6.6701 3.8894 1.7658 13 6 7.2106 4.2275 3.1579 14 6 7.2726 5.7239 3.3258 15 1 6.7046 6.2033 4.1093 16 6 8.0542 6.4808 2.4790 17 7 8.1087 7.7866 2.6257 18 14 9.0370 5.6515 1.1241 19 1 8.2128 5.5743 -0.1088 20 1 10.2651 6.4399 0.8498 21 1 9.4142 4.2811 1.5539 22 6 6.2790 3.6319 4.2172 23 6 6.1737 2.1201 4.0048 24 6 3.2689 0.2044 1.1902 25 1 2.7331 -0.3517 -2.1158 26 1 6.4182 0.0014 0.0027 27 1 4.8201 0.0306 3.3052 28 1 6.3588 -0.1152 2.4223 29 1 7.5384 1.9178 1.7400 30 1 6.1553 2.1265 0.6395 31 1 5.6876 4.3434 1.6369 32 1 7.3514 4.2747 1.0074 33 1 8.2094 3.8065 3.2730 34 1 8.6588 8.3192 2.0303 35 1 5.2904 4.0819 4.1268 36 1 6.6809 3.8327 5.2103 37 1 5.4998 1.6949 4.7485 38 1 7.1607 1.6692 4.1090 39 1 2.7322 0.3628 2.1139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237751963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:05 Heat of formation + Delta-G solvation = 48.264340 kcal Electronic energy + Delta-G solvation = -21910.959789 eV Core-core repulsion = 18651.120746 eV Total energy + Delta-G solvation = -3259.839043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22550 -38.44776 -37.04947 -36.53533 -34.45044 -32.39333 -31.51969 -30.92148 -30.22749 -27.10807 -24.70663 -24.28771 -22.68458 -22.18342 -21.11100 -18.92181 -18.67443 -16.77130 -16.69589 -16.32722 -15.91585 -15.38744 -14.67784 -14.44968 -14.28066 -14.20947 -13.54020 -13.35770 -13.32454 -13.22330 -13.07041 -12.87279 -12.40672 -12.18732 -12.02431 -11.88350 -11.68190 -11.59402 -11.39858 -11.20046 -10.87418 -10.60876 -10.10861 -9.94032 -9.65567 -9.32538 -9.15368 -9.05574 -8.93575 -8.52042 -8.09158 -6.06394 -4.04961 0.32677 0.74913 1.69875 2.39139 2.52412 3.26083 3.35263 3.37649 3.39633 3.50903 4.16103 4.34746 4.40860 4.58980 4.63463 4.84584 4.86691 5.18661 5.24011 5.33371 5.42640 5.46750 5.59905 5.66773 5.74072 5.78037 5.83074 6.03604 6.07270 6.11403 6.21116 6.31531 6.39348 6.69761 6.78046 6.88434 7.15998 7.19240 7.28770 7.41350 7.60271 7.78712 8.54028 8.98341 9.56464 11.07204 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.004072 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.623039 B = 6875.330830 C = 7726.145120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.258 3.742 3 C -0.017 4.017 4 C -0.066 4.066 5 C -0.037 4.037 6 Cl -0.060 7.060 7 C -0.073 4.073 8 C -0.057 4.057 9 C 0.089 3.911 10 N -0.529 5.529 11 C 0.050 3.950 12 C -0.116 4.116 13 C 0.013 3.987 14 C -0.511 4.511 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.903 5.903 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.298 1.298 21 H -0.267 1.267 22 C -0.096 4.096 23 C 0.058 3.942 24 C -0.043 4.043 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 -20.313 -5.678 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.058 4.058 3 C -0.021 4.021 4 C -0.088 4.088 5 C -0.064 4.064 6 Cl -0.031 7.031 7 C -0.093 4.093 8 C -0.058 4.058 9 C -0.039 4.039 10 N -0.254 5.254 11 C -0.077 4.077 12 C -0.154 4.154 13 C -0.006 4.006 14 C -0.548 4.548 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.541 5.541 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.226 1.226 21 H -0.192 1.192 22 C -0.134 4.134 23 C -0.070 4.070 24 C -0.064 4.064 25 H 0.160 0.840 26 H 0.158 0.842 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.423 -19.911 -5.901 22.054 hybrid contribution 1.897 -0.635 -1.031 2.251 sum -5.526 -20.546 -6.932 22.377 Atomic orbital electron populations 1.81269 1.11895 1.08506 1.06975 1.25489 0.92392 0.93851 0.94030 1.15749 0.84524 1.07270 0.94558 1.20968 0.92114 0.97958 0.97748 1.20621 0.91920 1.05522 0.88308 1.98398 1.75996 1.95164 1.33509 1.21293 1.01112 0.96574 0.90359 1.19683 0.93132 0.97858 0.95096 1.21079 0.98365 0.90602 0.93838 1.61981 1.48110 1.11520 1.03774 1.22313 0.93145 0.98021 0.94234 1.22010 1.01729 0.91484 1.00133 1.19184 0.94051 0.96884 0.90452 1.21059 1.27887 0.89359 1.16541 0.90880 1.25027 0.96238 0.94641 0.97355 1.69898 1.40497 1.04877 1.38842 0.86867 0.79261 0.79502 0.82719 1.20520 1.22596 1.19235 1.21498 1.01037 0.91432 0.99460 1.22211 0.97129 0.99057 0.88560 1.21173 0.93555 0.94549 0.97123 0.84035 0.84235 0.89346 0.93551 0.95503 0.91660 0.91246 0.93364 0.96069 0.92729 0.91726 0.92255 0.91605 0.95347 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.26 18.54 41.83 0.78 -4.48 16 2 C 0.26 2.72 15.33 -22.47 -0.34 2.38 16 3 C -0.02 -0.16 5.73 -106.93 -0.61 -0.77 16 4 C -0.07 -0.56 9.54 -39.13 -0.37 -0.93 16 5 C -0.04 -0.33 6.31 -39.55 -0.25 -0.58 16 6 Cl -0.06 -0.54 28.95 -51.86 -1.50 -2.04 16 7 C -0.07 -0.68 7.64 -39.45 -0.30 -0.98 16 8 C -0.06 -0.54 4.88 -104.69 -0.51 -1.05 16 9 C 0.09 0.89 5.11 -4.98 -0.03 0.87 16 10 N -0.53 -7.39 4.65 -236.11 -1.10 -8.49 16 11 C 0.05 0.80 5.15 -3.83 -0.02 0.78 16 12 C -0.12 -2.38 4.84 -26.65 -0.13 -2.51 16 13 C 0.01 0.29 1.75 -91.64 -0.16 0.13 16 14 C -0.51 -13.99 9.15 -34.44 -0.31 -14.30 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 17 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 18 Si 0.89 21.56 24.37 -169.99 -4.14 17.42 16 19 H -0.28 -6.60 6.89 56.52 0.39 -6.21 16 20 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.27 -6.16 6.53 56.52 0.37 -5.80 16 22 C -0.10 -1.79 5.32 -26.65 -0.14 -1.93 16 23 C 0.06 0.84 5.46 -3.83 -0.02 0.81 16 24 C -0.04 -0.38 9.40 -39.16 -0.37 -0.75 16 25 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 26 H 0.14 1.22 7.95 -52.48 -0.42 0.80 16 27 H 0.09 0.74 7.93 -51.93 -0.41 0.32 16 28 H 0.05 0.44 8.07 -51.93 -0.42 0.02 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.95 5.75 -51.93 -0.30 0.65 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.05 1.06 3.38 -51.93 -0.18 0.88 16 33 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.80 8.02 -51.93 -0.42 0.39 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -30.37 333.46 -8.91 -39.28 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.07 Total: -3.06 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -3.67 Total: -16.98 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.45 Total: -39.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.37 -8.91 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237751963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.541 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds