Wall clock time and date at job start Tue Mar 31 2020 08:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48500 * 109.47362 * 269.99934 * 3 2 1 5 5 H 1.48509 * 109.47211 * 29.99831 * 3 2 1 6 6 H 1.48495 * 109.47539 * 149.99762 * 3 2 1 7 7 C 1.39895 * 119.99484 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99716 * 163.56021 * 7 2 1 9 9 C 1.41374 * 120.00313 * 343.56432 * 7 2 1 10 10 C 1.40806 * 120.57120 * 155.71708 * 9 7 2 11 11 N 1.31508 * 120.69391 * 179.97438 * 10 9 7 12 12 C 1.32157 * 122.07713 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.45569 * 179.97438 * 12 11 10 14 14 C 1.40075 * 121.08391 * 359.97366 * 12 11 10 15 15 C 1.48361 * 120.42314 * 180.02562 * 14 12 11 16 16 C 1.39725 * 120.84637 * 129.71806 * 15 14 12 17 17 N 1.32130 * 119.04886 * 179.76388 * 16 15 14 18 18 C 1.32525 * 120.86682 * 0.52400 * 17 16 15 19 19 N 1.38366 * 119.07475 * 179.70409 * 18 17 16 20 20 C 1.46499 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47306 * 179.97438 * 20 19 18 22 22 O 1.42902 * 109.47010 * 64.99940 * 21 20 19 23 23 N 1.32530 * 121.85506 * 359.72358 * 18 17 16 24 24 C 1.32130 * 120.86628 * 0.02562 * 23 18 17 25 25 C 1.39008 * 119.15960 * 0.02562 * 14 12 11 26 26 H 0.97006 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.07993 * 119.65005 * 0.25300 * 10 9 7 28 28 H 1.07999 * 120.46815 * 0.02562 * 16 15 14 29 29 H 0.96999 * 120.00244 * 180.02562 * 19 18 17 30 30 H 1.09005 * 109.47160 * 300.00205 * 20 19 18 31 31 H 1.09004 * 109.47083 * 59.99263 * 20 19 18 32 32 H 1.09006 * 109.47054 * 184.99949 * 21 20 19 33 33 H 1.08990 * 109.46958 * 304.99783 * 21 20 19 34 34 H 0.96697 * 113.99810 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.47559 * 179.97438 * 24 23 18 36 36 H 1.07996 * 120.93875 * 179.97438 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5402 1.4401 0.7000 7 6 2.0081 -1.2116 0.0005 8 1 3.0550 -1.2309 -0.2642 9 6 1.3445 -2.4107 0.3475 10 6 1.8236 -3.6528 -0.1110 11 7 1.2085 -4.7698 0.2106 12 6 0.1259 -4.7817 0.9685 13 9 -0.4640 -5.9602 1.2659 14 6 -0.4199 -3.5925 1.4686 15 6 -1.6355 -3.6230 2.3186 16 6 -1.6717 -2.9479 3.5414 17 7 -2.7744 -2.9949 4.2678 18 6 -3.8318 -3.6788 3.8550 19 7 -4.9652 -3.7081 4.6482 20 6 -4.9850 -2.9889 5.9243 21 6 -6.3452 -3.1820 6.5976 22 8 -6.5173 -4.5594 6.9372 23 7 -3.8342 -4.3359 2.7041 24 6 -2.7710 -4.3327 1.9195 25 6 0.1918 -2.3835 1.1584 26 1 -0.4850 0.8401 -0.0004 27 1 2.7081 -3.6889 -0.7296 28 1 -0.8121 -2.3921 3.8858 29 1 -5.7467 -4.2048 4.3593 30 1 -4.1997 -3.3776 6.5727 31 1 -4.8159 -1.9270 5.7456 32 1 -6.3920 -2.5761 7.5025 33 1 -7.1361 -2.8749 5.9134 34 1 -7.3599 -4.7556 7.3691 35 1 -2.7797 -4.8707 0.9831 36 1 -0.2048 -1.4495 1.5282 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242836310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:26 Heat of formation + Delta-G solvation = -34.127203 kcal Electronic energy + Delta-G solvation = -23512.587255 eV Core-core repulsion = 19717.298728 eV Total energy + Delta-G solvation = -3795.288527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.41076 -41.94970 -40.08069 -38.45210 -36.50602 -35.98006 -34.73707 -34.07190 -32.21126 -30.86323 -28.88164 -27.38451 -25.81984 -24.96448 -23.63510 -23.13965 -22.53597 -19.39515 -19.26883 -18.66015 -18.46748 -18.43817 -17.57500 -17.07519 -16.52199 -16.30475 -16.26005 -16.07823 -15.74294 -15.07509 -14.99213 -14.50003 -14.21277 -14.20477 -14.07959 -13.89693 -13.79919 -13.61213 -13.10364 -12.84497 -12.55570 -12.28621 -12.22137 -11.86713 -11.81381 -11.52019 -11.20877 -10.99324 -10.52714 -10.23556 -10.07389 -9.58479 -8.82816 -8.74846 -6.47804 -0.12526 0.10289 0.66295 0.89248 1.44716 1.50954 1.59912 1.84428 2.19178 2.57950 2.84444 3.12817 3.27966 3.36030 3.49667 3.68524 3.72299 3.83305 4.05650 4.18099 4.25532 4.33570 4.53336 4.67267 4.76788 4.79822 4.87192 5.02714 5.05765 5.16743 5.22813 5.60442 5.73665 5.77508 5.91562 6.06923 6.35998 6.41510 6.63736 6.67289 6.90748 7.26389 7.35850 8.17261 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003750 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.914294 B = 7464.031669 C = 8930.732511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.456 4.456 8 H 0.098 0.902 9 C 0.037 3.963 10 C -0.001 4.001 11 N -0.501 5.501 12 C 0.136 3.864 13 F -0.146 7.146 14 C -0.069 4.069 15 C -0.201 4.201 16 C 0.207 3.793 17 N -0.570 5.570 18 C 0.541 3.459 19 N -0.686 5.686 20 C 0.133 3.867 21 C 0.071 3.929 22 O -0.595 6.595 23 N -0.578 5.578 24 C 0.207 3.793 25 C -0.113 4.113 26 H 0.295 0.705 27 H 0.156 0.844 28 H 0.181 0.819 29 H 0.419 0.581 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.400 0.600 35 H 0.169 0.831 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.523 2.409 10.574 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.116 0.884 9 C 0.033 3.967 10 C -0.163 4.163 11 N -0.213 5.213 12 C -0.017 4.017 13 F -0.126 7.126 14 C -0.074 4.074 15 C -0.209 4.209 16 C 0.039 3.961 17 N -0.293 5.293 18 C 0.184 3.816 19 N -0.325 5.325 20 C 0.010 3.990 21 C -0.007 4.007 22 O -0.404 6.404 23 N -0.300 5.300 24 C 0.039 3.961 25 C -0.138 4.138 26 H 0.106 0.894 27 H 0.173 0.827 28 H 0.198 0.802 29 H 0.257 0.743 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.186 0.814 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.768 1.761 10.831 15.374 hybrid contribution -0.091 0.804 -0.448 0.925 sum -10.858 2.566 10.382 15.241 Atomic orbital electron populations 1.69822 1.09176 1.31532 1.32741 1.26862 0.95469 1.04856 0.90826 0.85087 0.79220 0.75266 0.79628 1.18725 1.19301 1.17665 1.19909 0.98546 0.90928 1.39059 0.88380 1.18797 0.92726 0.94533 0.90674 1.22589 1.02641 0.86298 1.04779 1.66258 1.08029 1.34231 1.12816 1.17724 0.96265 0.80122 1.07583 1.91387 1.82430 1.46500 1.92245 1.18811 0.95703 0.92661 1.00268 1.20042 0.96119 1.06109 0.98644 1.23234 0.94503 0.90521 0.87807 1.67914 1.00753 1.24354 1.36235 1.19729 0.87803 0.87477 0.86589 1.44054 1.12079 1.56019 1.20320 1.21517 0.98310 0.96787 0.82433 1.22444 0.95073 0.83381 0.99775 1.86511 1.44802 1.26273 1.82845 1.67874 1.30263 1.25446 1.06418 1.23074 0.85945 0.90359 0.96724 1.21680 0.97756 0.95396 0.98968 0.89375 0.82672 0.80226 0.74302 0.92446 0.89769 0.89197 0.91362 0.74906 0.81435 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.22 10.90 21.82 0.24 -36.98 16 2 C 0.04 1.65 5.19 85.24 0.44 2.09 16 3 Si 0.99 32.98 29.59 68.60 2.03 35.01 16 4 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 5 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 7 C -0.46 -21.17 9.08 23.44 0.21 -20.95 16 8 H 0.10 4.23 7.90 -2.91 -0.02 4.21 16 9 C 0.04 1.83 5.59 -21.21 -0.12 1.71 16 10 C 0.00 -0.06 10.96 85.37 0.94 0.87 16 11 N -0.50 -24.87 10.33 -193.72 -2.00 -26.87 16 12 C 0.14 6.59 8.32 85.09 0.71 7.30 16 13 F -0.15 -6.78 15.98 44.97 0.72 -6.06 16 14 C -0.07 -3.17 5.52 -19.95 -0.11 -3.28 16 15 C -0.20 -8.13 5.34 -19.86 -0.11 -8.24 16 16 C 0.21 7.59 10.86 85.01 0.92 8.52 16 17 N -0.57 -19.98 9.56 -197.17 -1.88 -21.86 16 18 C 0.54 18.49 8.42 261.48 2.20 20.69 16 19 N -0.69 -17.92 5.65 -351.02 -1.98 -19.91 16 20 C 0.13 2.68 6.02 86.38 0.52 3.20 16 21 C 0.07 0.86 7.18 71.98 0.52 1.37 16 22 O -0.60 -8.78 13.60 -148.98 -2.03 -10.80 16 23 N -0.58 -21.17 10.44 -197.16 -2.06 -23.23 16 24 C 0.21 7.98 10.19 85.01 0.87 8.85 16 25 C -0.11 -5.37 8.32 23.12 0.19 -5.17 16 26 H 0.30 12.29 8.30 -92.70 -0.77 11.52 16 27 H 0.16 6.59 8.06 -2.91 -0.02 6.57 16 28 H 0.18 5.94 8.06 -2.91 -0.02 5.92 16 29 H 0.42 9.84 8.58 -92.71 -0.80 9.04 16 30 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.40 1.93 9.12 -74.06 -0.68 1.25 16 35 H 0.17 6.20 7.86 -2.91 -0.02 6.18 16 36 H 0.13 6.42 6.20 -2.91 -0.02 6.40 16 Total: -1.00 -61.74 325.00 -0.09 -61.83 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.31 Total: 31.92 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 7.18 Total: 16.96 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -7.69 Total: -128.85 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -2.03 Total: -10.80 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.72 Total: -6.06 kcal Atomic # 14 Polarization: 32.98 SS G_CDS: 2.03 Total: 35.01 kcal Total: -61.74 -0.09 -61.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242836310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.702 kcal (2) G-P(sol) polarization free energy of solvation -61.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds