Wall clock time and date at job start Tue Mar 31 2020 08:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35614 * 116.99908 * 2 1 4 4 C 1.39134 * 119.88646 * 0.21962 * 3 2 1 5 5 C 1.36433 * 120.43512 * 180.25090 * 4 3 2 6 6 C 1.40906 * 120.18876 * 359.79180 * 5 4 3 7 7 C 1.41243 * 120.11284 * 179.97438 * 6 5 4 8 8 H 1.07991 * 120.00663 * 24.57550 * 7 6 5 9 9 C 1.39861 * 119.99509 * 204.57188 * 7 6 5 10 10 N 1.30893 * 120.00531 * 17.97398 * 9 7 6 11 11 Si 1.86803 * 119.99777 * 197.97047 * 9 7 6 12 12 H 1.48496 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47134 * 120.00506 * 11 9 7 14 14 H 1.48504 * 109.46745 * 240.00282 * 11 9 7 15 15 C 1.40617 * 119.76584 * 359.97244 * 6 5 4 16 16 C 1.38587 * 119.57046 * 0.02562 * 15 6 5 17 17 C 1.48307 * 120.09691 * 179.97438 * 16 15 6 18 18 C 1.39375 * 120.10854 * 65.00740 * 17 16 15 19 19 C 1.37953 * 119.92534 * 179.97438 * 18 17 16 20 20 C 1.38597 * 120.15133 * 359.97438 * 19 18 17 21 21 F 1.35100 * 119.88952 * 180.02562 * 20 19 18 22 22 C 1.38489 * 120.21936 * 0.28357 * 20 19 18 23 23 C 1.50704 * 119.96020 * 179.72283 * 22 20 19 24 24 C 1.38223 * 120.07352 * 359.44006 * 22 20 19 25 25 F 1.35098 * 120.07652 * 180.29759 * 24 22 20 26 26 H 1.09002 * 109.47645 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47022 * 299.99547 * 1 2 3 28 28 H 1.09002 * 109.47617 * 59.99446 * 1 2 3 29 29 H 1.07997 * 119.77972 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.89758 * 179.76341 * 5 4 3 31 31 H 0.96994 * 120.00585 * 179.97438 * 10 9 7 32 32 H 1.08002 * 120.21210 * 180.02562 * 15 6 5 33 33 H 1.07998 * 120.03651 * 359.94838 * 18 17 16 34 34 H 1.07998 * 119.92716 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.46988 * 89.99671 * 23 22 20 36 36 H 1.09003 * 109.46891 * 209.99752 * 23 22 20 37 37 H 1.09000 * 109.46764 * 329.99573 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2845 2.3737 0.0046 5 6 1.8922 3.5952 -0.0005 6 6 3.2982 3.6871 -0.0061 7 6 3.9257 4.9525 -0.0119 8 1 3.4051 5.8152 0.3767 9 6 5.2213 5.0882 -0.5209 10 7 5.7197 4.1605 -1.2983 11 14 6.2406 6.5936 -0.0914 12 1 5.4539 7.4872 0.7961 13 1 7.4808 6.1690 0.6063 14 1 6.5970 7.3214 -1.3357 15 6 4.0745 2.5146 -0.0058 16 6 3.4469 1.2789 -0.0006 17 6 4.2542 0.0348 -0.0008 18 6 5.0663 -0.2719 1.0896 19 6 5.8152 -1.4304 1.0857 20 6 5.7615 -2.2903 0.0000 21 9 6.4968 -3.4237 0.0020 22 6 4.9608 -1.9890 -1.0890 23 6 4.9116 -2.9251 -2.2690 24 6 4.2022 -0.8335 -1.0923 25 9 3.4164 -0.5425 -2.1520 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2064 2.3109 0.0078 30 1 1.2937 4.4942 -0.0007 31 1 6.6180 4.2548 -1.6516 32 1 5.1527 2.5766 -0.0096 33 1 5.1095 0.3969 1.9365 34 1 6.4448 -1.6679 1.9304 35 1 4.1183 -3.6574 -2.1190 36 1 4.7133 -2.3552 -3.1768 37 1 5.8678 -3.4396 -2.3646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245691663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:32 Heat of formation + Delta-G solvation = -91.553469 kcal Electronic energy + Delta-G solvation = -24543.811422 eV Core-core repulsion = 20693.819992 eV Total energy + Delta-G solvation = -3849.991430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.75339 -48.35500 -39.16213 -38.13644 -36.37520 -33.55597 -32.81590 -31.26855 -29.17835 -28.22603 -27.01230 -26.61257 -24.69518 -22.77522 -21.89685 -20.72821 -19.98012 -17.76448 -17.40275 -16.91204 -16.88719 -15.76287 -15.40917 -15.23689 -15.12185 -14.84556 -14.80347 -14.46615 -14.03035 -13.47954 -13.22847 -13.14014 -13.00714 -12.73420 -12.40861 -12.33298 -12.10617 -11.64039 -11.48508 -11.35464 -11.23283 -11.10743 -10.99577 -10.79867 -10.68238 -10.04383 -9.90976 -9.54661 -9.09887 -8.47634 -8.30874 -7.54029 -7.08617 -6.77608 -4.32096 1.30213 1.39253 2.62839 2.77558 3.06675 3.10771 3.13855 3.76194 3.91535 4.24170 4.27571 4.49248 4.79753 4.85036 4.96738 5.20764 5.45455 5.54540 5.61205 5.65434 5.66830 5.69531 5.84897 5.93584 6.04458 6.17964 6.23670 6.32432 6.35386 6.49679 6.67195 6.87382 6.99084 7.10445 7.14515 7.30215 7.38927 7.66589 7.86903 8.07918 8.36380 8.54184 8.82218 8.87039 10.16722 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.005482 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.571633 B = 5106.531818 C = 6468.601669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.326 6.326 3 C 0.020 3.980 4 C -0.169 4.169 5 C -0.183 4.183 6 C 0.085 3.915 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.796 5.796 11 Si 0.906 3.094 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.275 1.275 15 C -0.109 4.109 16 C -0.074 4.074 17 C -0.034 4.034 18 C -0.063 4.063 19 C -0.162 4.162 20 C 0.105 3.895 21 F -0.140 7.140 22 C -0.163 4.163 23 C -0.108 4.108 24 C 0.145 3.855 25 F -0.122 7.122 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.281 0.719 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 -9.158 1.988 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.241 6.241 3 C -0.024 4.024 4 C -0.188 4.188 5 C -0.203 4.203 6 C 0.083 3.917 7 C -0.492 4.492 8 H 0.096 0.904 9 C -0.142 4.142 10 N -0.422 5.422 11 Si 0.730 3.270 12 H -0.184 1.184 13 H -0.197 1.197 14 H -0.201 1.201 15 C -0.129 4.129 16 C -0.075 4.075 17 C -0.035 4.035 18 C -0.081 4.081 19 C -0.181 4.181 20 C 0.085 3.915 21 F -0.118 7.118 22 C -0.165 4.165 23 C -0.164 4.164 24 C 0.125 3.875 25 F -0.100 7.100 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.755 -9.423 1.789 9.621 hybrid contribution 0.194 0.763 -0.137 0.799 sum -0.561 -8.660 1.653 8.834 Atomic orbital electron populations 1.22716 0.80904 1.01794 1.00324 1.85852 1.19150 1.28275 1.90792 1.18481 0.90552 0.83191 1.10176 1.20352 0.97512 0.92758 1.08175 1.20659 0.94834 0.95173 1.09637 1.17486 0.90551 0.93277 0.90393 1.19460 0.98614 0.94878 1.36238 0.90350 1.25868 0.98003 0.97728 0.92597 1.69830 1.16444 1.33596 1.22378 0.86300 0.79848 0.81559 0.79273 1.18443 1.19701 1.20056 1.21286 0.99974 0.88972 1.02629 1.17629 0.88741 0.91499 1.09607 1.18956 0.97267 0.94677 0.92587 1.20987 0.94002 0.95504 0.97612 1.20995 1.03157 0.95526 0.98426 1.17096 0.94590 0.84449 0.95330 1.91446 1.75144 1.48540 1.96717 1.19670 1.01042 0.97731 0.98046 1.20587 1.02788 0.97931 0.95115 1.17203 0.91751 0.93456 0.85083 1.91494 1.71605 1.93083 1.53794 0.90033 0.93904 0.93851 0.88276 0.88456 0.90855 0.85175 0.84126 0.84579 0.90935 0.90825 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -6.62 9.62 -18.54 -0.18 -6.80 16 3 C 0.02 0.44 6.51 -38.43 -0.25 0.19 16 4 C -0.17 -3.70 8.95 -39.90 -0.36 -4.06 16 5 C -0.18 -4.32 9.72 -39.22 -0.38 -4.70 16 6 C 0.09 2.18 5.57 -106.85 -0.60 1.59 16 7 C -0.46 -11.80 9.04 -37.83 -0.34 -12.14 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.08 1.83 5.13 -17.34 -0.09 1.74 16 10 N -0.80 -20.15 10.96 55.54 0.61 -19.54 16 11 Si 0.91 18.21 29.60 -169.99 -5.03 13.18 16 12 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 13 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 14 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 15 C -0.11 -2.72 8.36 -38.56 -0.32 -3.04 16 16 C -0.07 -1.71 5.02 -104.81 -0.53 -2.23 16 17 C -0.03 -0.69 4.94 -104.83 -0.52 -1.21 16 18 C -0.06 -1.09 9.73 -39.26 -0.38 -1.47 16 19 C -0.16 -2.45 10.01 -39.55 -0.40 -2.84 16 20 C 0.10 1.65 7.24 -39.36 -0.28 1.37 16 21 F -0.14 -2.07 16.46 2.25 0.04 -2.03 16 22 C -0.16 -2.74 5.89 -104.53 -0.62 -3.35 16 23 C -0.11 -1.47 9.65 36.01 0.35 -1.13 16 24 C 0.14 2.84 6.88 -39.09 -0.27 2.57 16 25 F -0.12 -2.55 15.83 2.25 0.04 -2.51 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.61 7.64 -51.93 -0.40 0.22 16 28 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.10 1.88 6.26 -52.49 -0.33 1.55 16 30 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 31 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 32 H 0.13 3.35 6.16 -52.49 -0.32 3.02 16 33 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 34 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.00 7.64 -51.93 -0.40 0.60 16 37 H 0.07 0.87 7.63 -51.93 -0.40 0.47 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -27.69 325.86 -7.51 -35.20 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.90 Total: 4.73 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -3.99 Total: -27.13 kcal Atomic # 7 Polarization: -20.15 SS G_CDS: 0.61 Total: -19.54 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.18 Total: -6.80 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.55 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.69 -7.51 -35.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245691663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.354 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds