Wall clock time and date at job start Tue Mar 31 2020 08:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35614 * 116.99908 * 2 1 4 4 C 1.39134 * 119.88646 * 0.21962 * 3 2 1 5 5 C 1.36433 * 120.43512 * 180.25090 * 4 3 2 6 6 C 1.40906 * 120.18876 * 359.79180 * 5 4 3 7 7 C 1.41243 * 120.11284 * 179.97438 * 6 5 4 8 8 H 1.07991 * 120.00663 * 24.57550 * 7 6 5 9 9 C 1.39861 * 119.99509 * 204.57188 * 7 6 5 10 10 N 1.30893 * 120.00531 * 17.97398 * 9 7 6 11 11 Si 1.86803 * 119.99777 * 197.97047 * 9 7 6 12 12 H 1.48496 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47134 * 120.00506 * 11 9 7 14 14 H 1.48504 * 109.46745 * 240.00282 * 11 9 7 15 15 C 1.40617 * 119.76584 * 359.97244 * 6 5 4 16 16 C 1.38587 * 119.57046 * 0.02562 * 15 6 5 17 17 C 1.48307 * 120.09691 * 179.97438 * 16 15 6 18 18 C 1.39375 * 120.10854 * 65.00740 * 17 16 15 19 19 C 1.37953 * 119.92534 * 179.97438 * 18 17 16 20 20 C 1.38597 * 120.15133 * 359.97438 * 19 18 17 21 21 F 1.35100 * 119.88952 * 180.02562 * 20 19 18 22 22 C 1.38489 * 120.21936 * 0.28357 * 20 19 18 23 23 C 1.50704 * 119.96020 * 179.72283 * 22 20 19 24 24 C 1.38223 * 120.07352 * 359.44006 * 22 20 19 25 25 F 1.35098 * 120.07652 * 180.29759 * 24 22 20 26 26 H 1.09002 * 109.47645 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47022 * 299.99547 * 1 2 3 28 28 H 1.09002 * 109.47617 * 59.99446 * 1 2 3 29 29 H 1.07997 * 119.77972 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.89758 * 179.76341 * 5 4 3 31 31 H 0.96994 * 120.00585 * 179.97438 * 10 9 7 32 32 H 1.08002 * 120.21210 * 180.02562 * 15 6 5 33 33 H 1.07998 * 120.03651 * 359.94838 * 18 17 16 34 34 H 1.07998 * 119.92716 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.46988 * 89.99671 * 23 22 20 36 36 H 1.09003 * 109.46891 * 209.99752 * 23 22 20 37 37 H 1.09000 * 109.46764 * 329.99573 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2845 2.3737 0.0046 5 6 1.8922 3.5952 -0.0005 6 6 3.2982 3.6871 -0.0061 7 6 3.9257 4.9525 -0.0119 8 1 3.4051 5.8152 0.3767 9 6 5.2213 5.0882 -0.5209 10 7 5.7197 4.1605 -1.2983 11 14 6.2406 6.5936 -0.0914 12 1 5.4539 7.4872 0.7961 13 1 7.4808 6.1690 0.6063 14 1 6.5970 7.3214 -1.3357 15 6 4.0745 2.5146 -0.0058 16 6 3.4469 1.2789 -0.0006 17 6 4.2542 0.0348 -0.0008 18 6 5.0663 -0.2719 1.0896 19 6 5.8152 -1.4304 1.0857 20 6 5.7615 -2.2903 0.0000 21 9 6.4968 -3.4237 0.0020 22 6 4.9608 -1.9890 -1.0890 23 6 4.9116 -2.9251 -2.2690 24 6 4.2022 -0.8335 -1.0923 25 9 3.4164 -0.5425 -2.1520 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2064 2.3109 0.0078 30 1 1.2937 4.4942 -0.0007 31 1 6.6180 4.2548 -1.6516 32 1 5.1527 2.5766 -0.0096 33 1 5.1095 0.3969 1.9365 34 1 6.4448 -1.6679 1.9304 35 1 4.1183 -3.6574 -2.1190 36 1 4.7133 -2.3552 -3.1768 37 1 5.8678 -3.4396 -2.3646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245691663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:32 Heat of formation + Delta-G solvation = -103.812862 kcal Electronic energy + Delta-G solvation = -24544.343029 eV Core-core repulsion = 20693.819992 eV Total energy + Delta-G solvation = -3850.523037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.98076 -49.88055 -40.75559 -39.55031 -38.07134 -35.29605 -34.23916 -32.73103 -30.98322 -29.74379 -28.39678 -27.90676 -26.44953 -24.28480 -23.26786 -22.44770 -21.57863 -19.26150 -19.02435 -18.54546 -18.26632 -17.20589 -17.00698 -16.68261 -16.57203 -16.30390 -16.24278 -16.04423 -15.40792 -15.04921 -14.80310 -14.51081 -14.36847 -14.12113 -13.87662 -13.73564 -13.59543 -13.29045 -12.94258 -12.74654 -12.71593 -12.65759 -12.39596 -12.37136 -12.23066 -11.73582 -11.59572 -11.26118 -10.88547 -9.84701 -9.76253 -9.24921 -8.86400 -8.57885 -6.22361 -0.08459 0.05290 0.87580 0.99593 1.41002 1.49976 1.55620 2.23547 2.38818 2.68607 2.79856 2.91423 3.45565 3.56498 3.65581 3.68592 3.85501 4.15258 4.28705 4.43187 4.47402 4.51454 4.62866 4.64383 4.73477 4.75360 4.89908 4.99953 5.05076 5.06775 5.10116 5.17747 5.28149 5.32159 5.51680 5.57799 5.79689 5.88394 6.02807 6.23779 6.55752 6.78761 6.95513 7.06474 8.37671 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.005482 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.571633 B = 5106.531818 C = 6468.601669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C 0.021 3.979 4 C -0.171 4.171 5 C -0.197 4.197 6 C 0.054 3.946 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.036 3.964 10 N -0.831 5.831 11 Si 0.978 3.022 12 H -0.257 1.257 13 H -0.265 1.265 14 H -0.270 1.270 15 C -0.128 4.128 16 C -0.080 4.080 17 C -0.063 4.063 18 C -0.068 4.068 19 C -0.144 4.144 20 C 0.109 3.891 21 F -0.129 7.129 22 C -0.160 4.160 23 C -0.108 4.108 24 C 0.119 3.881 25 F -0.138 7.138 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.130 0.870 30 H 0.107 0.893 31 H 0.286 0.714 32 H 0.114 0.886 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -10.609 2.725 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.023 4.023 4 C -0.189 4.189 5 C -0.216 4.216 6 C 0.052 3.948 7 C -0.526 4.526 8 H 0.095 0.905 9 C -0.178 4.178 10 N -0.458 5.458 11 Si 0.799 3.201 12 H -0.181 1.181 13 H -0.189 1.189 14 H -0.195 1.195 15 C -0.147 4.147 16 C -0.081 4.081 17 C -0.064 4.064 18 C -0.086 4.086 19 C -0.163 4.163 20 C 0.090 3.910 21 F -0.107 7.107 22 C -0.162 4.162 23 C -0.164 4.164 24 C 0.099 3.901 25 F -0.117 7.117 26 H 0.132 0.868 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.148 0.852 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.167 0.833 34 H 0.191 0.809 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.481 -10.893 2.528 11.193 hybrid contribution -0.001 1.009 -0.356 1.070 sum -0.483 -9.883 2.172 10.131 Atomic orbital electron populations 1.23077 0.78249 1.04289 1.01103 1.85843 1.21875 1.27095 1.90481 1.18680 0.90765 0.84175 1.08694 1.20658 0.99155 0.91983 1.07116 1.20866 0.94403 0.96405 1.09948 1.17843 0.91741 0.93812 0.91411 1.19686 1.00031 0.95011 1.37870 0.90521 1.26669 0.98559 1.00705 0.91831 1.69902 1.17022 1.35567 1.23289 0.85216 0.78090 0.77725 0.79038 1.18092 1.18926 1.19495 1.21162 0.99222 0.89864 1.04466 1.17895 0.89783 0.92121 1.08315 1.19038 0.98714 0.94321 0.94358 1.21116 0.93817 0.96575 0.97103 1.21311 1.01964 0.93884 0.99098 1.17143 0.94105 0.84700 0.95098 1.91480 1.74722 1.47900 1.96638 1.19936 0.99955 0.97031 0.99307 1.20687 1.04365 0.97662 0.93699 1.17407 0.93077 0.94753 0.84837 1.91439 1.72314 1.93393 1.54509 0.86845 0.92640 0.93398 0.85196 0.87511 0.90342 0.86861 0.83343 0.80884 0.89328 0.91151 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.80 113.37 1.11 1.91 16 2 O -0.34 -13.45 9.62 -89.25 -0.86 -14.31 16 3 C 0.02 0.95 6.51 23.01 0.15 1.10 16 4 C -0.17 -7.45 8.95 22.06 0.20 -7.25 16 5 C -0.20 -9.50 9.72 22.50 0.22 -9.28 16 6 C 0.05 2.88 5.57 -21.31 -0.12 2.76 16 7 C -0.50 -26.35 9.04 23.40 0.21 -26.14 16 8 H 0.08 3.92 7.91 -2.92 -0.02 3.90 16 9 C 0.04 1.81 5.13 85.23 0.44 2.25 16 10 N -0.83 -43.59 10.96 21.81 0.24 -43.35 16 11 Si 0.98 37.98 29.60 68.60 2.03 40.01 16 12 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 13 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 14 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 15 C -0.13 -6.66 8.36 22.93 0.19 -6.46 16 16 C -0.08 -3.81 5.02 -19.99 -0.10 -3.91 16 17 C -0.06 -2.61 4.94 -20.00 -0.10 -2.71 16 18 C -0.07 -2.31 9.73 22.48 0.22 -2.09 16 19 C -0.14 -3.99 10.01 22.29 0.22 -3.76 16 20 C 0.11 3.17 7.24 22.42 0.16 3.33 16 21 F -0.13 -3.38 16.46 44.97 0.74 -2.64 16 22 C -0.16 -5.16 5.89 -19.81 -0.12 -5.27 16 23 C -0.11 -2.74 9.65 71.24 0.69 -2.05 16 24 C 0.12 4.66 6.88 22.59 0.16 4.82 16 25 F -0.14 -5.90 15.83 44.97 0.71 -5.19 16 26 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 1.46 7.64 -2.39 -0.02 1.44 16 28 H 0.05 1.33 7.66 -2.39 -0.02 1.31 16 29 H 0.13 4.72 6.26 -2.91 -0.02 4.71 16 30 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 31 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 32 H 0.11 6.18 6.16 -2.91 -0.02 6.16 16 33 H 0.15 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.84 7.64 -2.39 -0.02 1.82 16 37 H 0.09 1.93 7.63 -2.39 -0.02 1.91 16 Total: -1.00 -61.95 325.86 7.50 -54.45 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 1.11 Total: 23.79 kcal Atomic # 6 Polarization: -56.29 SS G_CDS: 3.53 Total: -52.76 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.24 Total: -43.35 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.86 Total: -14.31 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 1.45 Total: -7.83 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -61.95 7.50 -54.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245691663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.364 kcal (2) G-P(sol) polarization free energy of solvation -61.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds