Wall clock time and date at job start Tue Mar 31 2020 08:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48502 * 109.47519 * 240.00196 * 3 2 1 5 5 H 1.48502 * 109.47479 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47041 * 120.00509 * 3 2 1 7 7 C 1.37871 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47315 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47102 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47125 * 179.97438 * 11 10 9 13 13 C 1.39970 * 119.99791 * 179.97438 * 12 11 10 14 14 C 1.38962 * 120.50923 * 0.28071 * 13 12 11 15 15 C 1.38754 * 118.41909 * 180.23959 * 14 13 12 16 16 C 1.38053 * 119.34911 * 359.74717 * 15 14 13 17 17 N 1.32019 * 120.97657 * 359.97438 * 16 15 14 18 18 C 1.32124 * 121.72180 * 0.02562 * 17 16 15 19 19 O 1.35779 * 119.72895 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99584 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.46726 * 179.97438 * 20 19 18 22 22 F 1.39895 * 109.47411 * 59.99737 * 21 20 19 23 23 F 1.39898 * 109.46890 * 180.02562 * 21 20 19 24 24 F 1.39904 * 109.47059 * 299.99479 * 21 20 19 25 25 H 0.97005 * 119.99805 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46706 * 59.99604 * 9 7 2 27 27 H 1.09000 * 109.46523 * 300.00375 * 9 7 2 28 28 H 1.09007 * 109.47289 * 60.00092 * 10 9 7 29 29 H 1.08994 * 109.47519 * 300.00131 * 10 9 7 30 30 H 1.08999 * 109.47206 * 60.00447 * 11 10 9 31 31 H 1.09001 * 109.47619 * 300.00338 * 11 10 9 32 32 H 0.97000 * 120.00121 * 0.02562 * 12 11 10 33 33 H 1.08004 * 120.78910 * 359.97438 * 14 13 12 34 34 H 1.08003 * 120.32573 * 179.72809 * 15 14 13 35 35 H 1.08003 * 119.51129 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.47382 * 59.99623 * 20 19 18 37 37 H 1.09001 * 109.46938 * 299.99609 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1006 -0.0005 13 6 1.9656 -7.4203 0.0005 14 6 0.6016 -7.6863 -0.0039 15 6 0.1871 -9.0104 0.0024 16 6 1.1333 -10.0157 0.0074 17 7 2.4232 -9.7346 0.0057 18 6 2.8628 -8.4887 -0.0002 19 8 4.1987 -8.2460 -0.0012 20 6 5.0645 -9.3828 0.0038 21 6 6.5211 -8.9145 0.0012 22 9 6.7635 -8.1386 1.1397 23 9 7.3687 -10.0274 0.0055 24 9 6.7628 -8.1493 -1.1448 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8904 30 1 0.8533 -5.0451 -0.8897 31 1 0.8537 -5.0446 0.8903 32 1 3.3859 -5.9234 -0.0008 33 1 -0.1186 -6.8814 -0.0076 34 1 -0.8655 -9.2523 0.0037 35 1 0.8135 -11.0472 0.0118 36 1 4.8759 -9.9872 -0.8835 37 1 4.8759 -9.9793 0.8964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:00 Heat of formation + Delta-G solvation = -166.130252 kcal Electronic energy + Delta-G solvation = -24104.001975 eV Core-core repulsion = 19852.300180 eV Total energy + Delta-G solvation = -4251.701795 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.38933 -47.95278 -47.83149 -40.81330 -38.23849 -36.57982 -33.82131 -32.01531 -31.70057 -30.32331 -28.79329 -26.42401 -24.48025 -23.35745 -23.00481 -21.81142 -20.48018 -19.27341 -18.91460 -18.29953 -18.06781 -17.03967 -16.55400 -16.33459 -16.05756 -15.26848 -14.91984 -14.76943 -14.67126 -14.54621 -14.30218 -14.14660 -14.01313 -14.00733 -13.76314 -13.67682 -13.32002 -12.43491 -12.29364 -12.24387 -11.97216 -11.77605 -11.63567 -10.98401 -10.76322 -10.63376 -10.53666 -9.89942 -9.82788 -9.48748 -9.29820 -9.18329 -8.40608 -7.31329 -6.05897 -4.08697 1.15293 1.32405 1.94777 2.76260 3.30724 3.35133 3.37274 3.43683 3.46402 3.66358 3.76670 4.00855 4.27144 4.42082 4.71249 4.77009 4.81803 5.01863 5.09634 5.30308 5.36020 5.52928 5.63783 5.80885 6.01229 6.12487 6.28800 6.51323 6.52009 6.81518 6.92532 7.30532 7.57310 7.69522 7.74576 7.79648 7.92490 8.34398 8.97495 9.55908 11.05406 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.003114 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.538282 B = 8988.596625 C =10848.428933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.121 4.121 11 C 0.119 3.881 12 N -0.729 5.729 13 C 0.182 3.818 14 C -0.140 4.140 15 C -0.142 4.142 16 C 0.056 3.944 17 N -0.502 5.502 18 C 0.240 3.760 19 O -0.299 6.299 20 C 0.035 3.965 21 C 0.461 3.539 22 F -0.174 7.174 23 F -0.174 7.174 24 F -0.174 7.174 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.406 0.594 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.109 0.891 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 -23.046 0.011 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.159 4.159 11 C -0.004 4.004 12 N -0.356 5.356 13 C 0.073 3.927 14 C -0.171 4.171 15 C -0.163 4.163 16 C -0.100 4.100 17 N -0.225 5.225 18 C 0.055 3.945 19 O -0.207 6.207 20 C -0.043 4.043 21 C 0.407 3.593 22 F -0.155 7.155 23 F -0.155 7.155 24 F -0.156 7.156 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.242 0.758 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.127 0.873 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.338 -23.168 0.013 24.020 hybrid contribution 0.424 1.514 0.000 1.572 sum 6.763 -21.654 0.013 22.686 Atomic orbital electron populations 1.69946 1.06062 1.26846 1.50574 1.25012 0.94868 0.99312 0.95177 0.86635 0.79579 0.82988 0.78682 1.20197 1.21242 1.20203 1.21175 0.93043 0.90946 1.51021 0.92667 1.19015 0.93776 0.90900 0.97483 1.21861 0.99827 0.93035 1.01183 1.21705 0.92149 0.85774 1.00789 1.45031 1.09751 1.01319 1.79537 1.17934 0.91897 0.84710 0.98140 1.21037 0.92766 0.97948 1.05317 1.21797 1.01082 0.92509 1.00902 1.21954 0.86177 0.99650 1.02180 1.67022 1.19841 1.18993 1.16601 1.19001 0.82572 0.89018 1.03879 1.86101 1.13220 1.31316 1.90065 1.23453 0.83928 0.89289 1.07624 1.20177 0.89403 0.75456 0.74304 1.93240 1.95446 1.75824 1.51030 1.93214 1.73126 1.52889 1.96311 1.93242 1.95456 1.76402 1.50453 0.92860 0.96335 0.96344 0.92612 0.92605 0.92268 0.92260 0.75802 0.83790 0.84603 0.82780 0.87269 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.12 1.88 4.95 -4.04 -0.02 1.86 16 12 N -0.73 -10.51 5.73 -58.37 -0.33 -10.84 16 13 C 0.18 2.47 6.69 -83.40 -0.56 1.91 16 14 C -0.14 -1.66 9.42 -39.12 -0.37 -2.03 16 15 C -0.14 -1.39 10.10 -39.46 -0.40 -1.78 16 16 C 0.06 0.56 11.17 -17.54 -0.20 0.37 16 17 N -0.50 -5.99 9.22 -13.16 -0.12 -6.11 16 18 C 0.24 3.15 7.51 -16.95 -0.13 3.02 16 19 O -0.30 -3.74 9.28 -19.05 -0.18 -3.92 16 20 C 0.03 0.33 5.27 37.16 0.20 0.53 16 21 C 0.46 4.63 3.32 37.16 0.12 4.75 16 22 F -0.17 -2.01 17.26 2.25 0.04 -1.97 16 23 F -0.17 -1.62 17.32 2.25 0.04 -1.58 16 24 F -0.17 -2.01 17.26 2.25 0.04 -1.97 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 31 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 32 H 0.41 5.83 7.86 -40.82 -0.32 5.51 16 33 H 0.14 1.61 6.88 -52.48 -0.36 1.25 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -30.32 335.11 -6.22 -36.54 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.43 Total: 0.71 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.04 Total: -6.64 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.28 Total: -42.62 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.18 Total: -3.92 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.12 Total: -5.53 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.32 -6.22 -36.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.587 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds