Wall clock time and date at job start Tue Mar 31 2020 08:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48502 * 109.47519 * 240.00196 * 3 2 1 5 5 H 1.48502 * 109.47479 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47041 * 120.00509 * 3 2 1 7 7 C 1.37871 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47315 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47102 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47125 * 179.97438 * 11 10 9 13 13 C 1.39970 * 119.99791 * 179.97438 * 12 11 10 14 14 C 1.38962 * 120.50923 * 0.28071 * 13 12 11 15 15 C 1.38754 * 118.41909 * 180.23959 * 14 13 12 16 16 C 1.38053 * 119.34911 * 359.74717 * 15 14 13 17 17 N 1.32019 * 120.97657 * 359.97438 * 16 15 14 18 18 C 1.32124 * 121.72180 * 0.02562 * 17 16 15 19 19 O 1.35779 * 119.72895 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99584 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.46726 * 179.97438 * 20 19 18 22 22 F 1.39895 * 109.47411 * 59.99737 * 21 20 19 23 23 F 1.39898 * 109.46890 * 180.02562 * 21 20 19 24 24 F 1.39904 * 109.47059 * 299.99479 * 21 20 19 25 25 H 0.97005 * 119.99805 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46706 * 59.99604 * 9 7 2 27 27 H 1.09000 * 109.46523 * 300.00375 * 9 7 2 28 28 H 1.09007 * 109.47289 * 60.00092 * 10 9 7 29 29 H 1.08994 * 109.47519 * 300.00131 * 10 9 7 30 30 H 1.08999 * 109.47206 * 60.00447 * 11 10 9 31 31 H 1.09001 * 109.47619 * 300.00338 * 11 10 9 32 32 H 0.97000 * 120.00121 * 0.02562 * 12 11 10 33 33 H 1.08004 * 120.78910 * 359.97438 * 14 13 12 34 34 H 1.08003 * 120.32573 * 179.72809 * 15 14 13 35 35 H 1.08003 * 119.51129 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.47382 * 59.99623 * 20 19 18 37 37 H 1.09001 * 109.46938 * 299.99609 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1006 -0.0005 13 6 1.9656 -7.4203 0.0005 14 6 0.6016 -7.6863 -0.0039 15 6 0.1871 -9.0104 0.0024 16 6 1.1333 -10.0157 0.0074 17 7 2.4232 -9.7346 0.0057 18 6 2.8628 -8.4887 -0.0002 19 8 4.1987 -8.2460 -0.0012 20 6 5.0645 -9.3828 0.0038 21 6 6.5211 -8.9145 0.0012 22 9 6.7635 -8.1386 1.1397 23 9 7.3687 -10.0274 0.0055 24 9 6.7628 -8.1493 -1.1448 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8904 30 1 0.8533 -5.0451 -0.8897 31 1 0.8537 -5.0446 0.8903 32 1 3.3859 -5.9234 -0.0008 33 1 -0.1186 -6.8814 -0.0076 34 1 -0.8655 -9.2523 0.0037 35 1 0.8135 -11.0472 0.0118 36 1 4.8759 -9.9872 -0.8835 37 1 4.8759 -9.9793 0.8964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:00 Heat of formation + Delta-G solvation = -185.564680 kcal Electronic energy + Delta-G solvation = -24104.844715 eV Core-core repulsion = 19852.300180 eV Total energy + Delta-G solvation = -4252.544535 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.22066 -48.76206 -48.70580 -41.69310 -39.11566 -37.77271 -35.60682 -33.61881 -32.61504 -31.37330 -29.91993 -27.97219 -25.63826 -24.62372 -23.89637 -22.98206 -22.05580 -20.12542 -19.74982 -19.18946 -18.91948 -18.51793 -17.96094 -17.19393 -17.17863 -16.49108 -16.28094 -16.14495 -15.59793 -15.57334 -15.23459 -15.14344 -14.87739 -14.85680 -14.63941 -14.63589 -14.44853 -14.10608 -13.76485 -13.64608 -13.19820 -12.80294 -12.75037 -12.53827 -12.42368 -12.35446 -11.94905 -11.50654 -11.33284 -11.22780 -10.68496 -10.55402 -10.17718 -8.31077 -8.21209 -6.31703 0.28834 0.44073 1.14318 1.40404 1.42562 1.50540 1.94042 2.34408 2.44123 2.65550 2.85750 2.91901 3.12571 3.18930 3.47407 3.91560 3.99475 4.09770 4.13229 4.19588 4.22407 4.27800 4.55166 4.61551 4.95709 4.96683 5.00758 5.14810 5.30576 5.48690 5.50537 5.71284 5.83164 5.83647 6.21316 6.31464 6.68616 6.84560 6.90961 7.37507 8.90291 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.003114 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.538282 B = 8988.596625 C =10848.428933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.106 4.106 11 C 0.137 3.863 12 N -0.735 5.735 13 C 0.155 3.845 14 C -0.145 4.145 15 C -0.137 4.137 16 C 0.062 3.938 17 N -0.510 5.510 18 C 0.228 3.772 19 O -0.315 6.315 20 C 0.036 3.964 21 C 0.465 3.535 22 F -0.184 7.184 23 F -0.168 7.168 24 F -0.184 7.184 25 H 0.264 0.736 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.404 0.596 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.190 0.810 36 H 0.123 0.877 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 -24.471 0.014 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.144 4.144 11 C 0.013 3.987 12 N -0.365 5.365 13 C 0.048 3.952 14 C -0.176 4.176 15 C -0.157 4.157 16 C -0.094 4.094 17 N -0.232 5.232 18 C 0.045 3.955 19 O -0.224 6.224 20 C -0.041 4.041 21 C 0.410 3.590 22 F -0.166 7.166 23 F -0.149 7.149 24 F -0.166 7.166 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.240 0.760 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.207 0.793 36 H 0.141 0.859 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.431 -24.629 0.016 25.455 hybrid contribution 0.347 1.811 -0.001 1.843 sum 6.778 -22.819 0.015 23.804 Atomic orbital electron populations 1.70069 1.07638 1.27874 1.51484 1.25920 0.95769 1.03181 0.94716 0.85550 0.78336 0.78362 0.79108 1.19315 1.20745 1.19325 1.21659 0.93533 0.92486 1.50802 0.92376 1.18895 0.94209 0.92307 0.95441 1.21577 0.98656 0.93050 1.01142 1.21316 0.91763 0.84708 1.00899 1.44754 1.09154 1.01431 1.81133 1.18144 0.92847 0.84228 1.00007 1.21302 0.92230 0.99291 1.04792 1.22170 1.02853 0.91336 0.99336 1.22660 0.85527 1.01424 0.99815 1.67119 1.20916 1.18247 1.16914 1.19081 0.82719 0.89316 1.04385 1.86059 1.13427 1.32740 1.90166 1.23592 0.82834 0.88684 1.08949 1.20253 0.89875 0.75250 0.73587 1.93218 1.95558 1.76221 1.51583 1.93224 1.73043 1.52441 1.96241 1.93220 1.95566 1.76790 1.51014 0.92698 0.98336 0.98345 0.92608 0.92599 0.92206 0.92203 0.76048 0.83608 0.81338 0.79320 0.85906 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.72 9.11 25.60 0.23 -30.49 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.11 -4.16 5.27 30.59 0.16 -4.00 16 11 C 0.14 4.37 4.95 86.38 0.43 4.80 16 12 N -0.74 -21.23 5.73 -338.59 -1.94 -23.17 16 13 C 0.15 4.09 6.69 38.32 0.26 4.34 16 14 C -0.15 -3.24 9.42 22.57 0.21 -3.03 16 15 C -0.14 -2.25 10.10 22.35 0.23 -2.02 16 16 C 0.06 1.03 11.17 84.62 0.95 1.98 16 17 N -0.51 -11.02 9.22 -308.44 -2.84 -13.86 16 18 C 0.23 5.75 7.51 84.96 0.64 6.39 16 19 O -0.32 -7.72 9.28 -91.08 -0.84 -8.57 16 20 C 0.04 0.65 5.27 71.98 0.38 1.03 16 21 C 0.46 9.03 3.32 71.98 0.24 9.27 16 22 F -0.18 -4.20 17.26 44.97 0.78 -3.43 16 23 F -0.17 -2.96 17.32 44.97 0.78 -2.18 16 24 F -0.18 -4.21 17.26 44.97 0.78 -3.43 16 25 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 26 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.88 7.98 -2.39 -0.02 1.86 16 31 H 0.06 1.88 8.00 -2.39 -0.02 1.86 16 32 H 0.40 11.75 7.86 -92.71 -0.73 11.02 16 33 H 0.15 3.12 6.88 -2.91 -0.02 3.10 16 34 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.12 1.84 8.11 -2.39 -0.02 1.82 16 37 H 0.12 1.84 8.11 -2.39 -0.02 1.82 16 Total: -1.00 -65.32 335.11 3.72 -61.60 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.38 Total: 12.02 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.33 Total: -9.51 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -4.50 Total: -92.48 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.84 Total: -8.57 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 2.33 Total: -9.04 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.32 3.72 -61.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.964 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds