Wall clock time and date at job start Tue Mar 31 2020 08:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42902 * 114.16596 * 139.67590 * 12 11 10 14 14 C 1.42900 * 114.00147 * 116.16167 * 13 12 11 15 15 C 1.50698 * 109.47313 * 179.97438 * 14 13 12 16 16 C 1.40804 * 126.66730 * 359.97438 * 15 14 13 17 17 C 1.37268 * 103.86233 * 179.97438 * 16 15 14 18 18 C 1.46993 * 126.96913 * 179.97438 * 17 16 15 19 19 C 1.36336 * 125.96370 * 179.97438 * 18 17 16 20 20 C 1.40703 * 106.71894 * 179.97438 * 19 18 17 21 21 C 1.34892 * 107.08208 * 359.97438 * 20 19 18 22 22 O 1.34223 * 108.73116 * 359.73786 * 21 20 19 23 23 O 1.34623 * 106.06224 * 359.97438 * 17 16 15 24 24 N 1.20892 * 111.40535 * 359.75344 * 23 17 16 25 25 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 28 28 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 29 29 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 30 30 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 31 31 H 1.08995 * 114.17331 * 272.37461 * 12 11 10 32 32 H 1.09006 * 109.47066 * 299.99744 * 14 13 12 33 33 H 1.08998 * 109.47360 * 59.99512 * 14 13 12 34 34 H 1.08001 * 128.06916 * 359.92799 * 16 15 14 35 35 H 1.07996 * 126.64714 * 359.95965 * 19 18 17 36 36 H 1.07996 * 126.46325 * 179.97438 * 20 19 18 37 37 H 1.08000 * 125.63785 * 180.02562 * 21 20 19 38 38 H 1.08997 * 113.47356 * 253.46676 * 25 10 9 39 39 H 1.08997 * 113.47044 * 23.93734 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 6.6730 -3.5953 1.7037 14 6 7.1504 -4.8423 2.2127 15 6 8.3385 -4.5980 3.1070 16 6 8.9163 -3.3517 3.4160 17 6 9.9536 -3.6695 4.2569 18 6 10.8993 -2.7364 4.8859 19 6 11.9234 -3.0751 5.7197 20 6 12.5645 -1.8759 6.0813 21 6 11.9105 -0.8737 5.4588 22 8 10.9098 -1.3971 4.7334 23 8 9.9292 -5.0090 4.3888 24 7 9.0273 -5.4989 3.7500 25 6 5.4559 -2.6254 -0.2387 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 -0.8895 28 1 3.8746 -0.6808 0.8905 29 1 4.4654 -2.2360 2.0761 30 1 3.5271 -3.7542 1.7430 31 1 5.3898 -4.7272 0.4633 32 1 6.3593 -5.3285 2.7836 33 1 7.4466 -5.4840 1.3829 34 1 8.6142 -2.3738 3.0710 35 1 12.1908 -4.0709 6.0407 36 1 13.4191 -1.7765 6.7341 37 1 12.1548 0.1760 5.5286 38 1 5.7214 -2.9782 -1.2352 39 1 5.9701 -1.7038 0.0339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222713549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:33 Heat of formation + Delta-G solvation = 89.066428 kcal Electronic energy + Delta-G solvation = -23274.075380 eV Core-core repulsion = 19575.296484 eV Total energy + Delta-G solvation = -3698.778896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.22721 -42.97698 -39.78390 -37.16731 -34.42137 -33.73742 -32.97699 -32.74883 -29.85782 -29.14663 -27.62219 -25.56629 -25.12487 -23.72021 -23.02824 -21.83288 -21.27672 -20.52285 -19.58711 -18.70736 -18.06378 -17.21053 -16.83388 -16.58919 -16.43960 -15.78227 -15.55359 -15.29733 -14.49006 -14.27156 -14.01339 -13.76229 -13.41349 -13.30780 -13.16038 -12.78492 -12.44217 -12.29717 -11.93814 -11.87178 -11.73403 -11.43100 -10.98718 -10.85698 -10.65819 -10.34773 -10.29700 -10.02722 -9.79620 -9.38238 -9.33955 -8.60352 -8.55818 -8.12257 -6.07331 -4.05048 0.33440 1.58893 1.71256 1.89507 2.37919 3.05246 3.26004 3.33797 3.35121 3.36066 3.91314 4.24725 4.39406 4.46589 4.52843 4.64787 4.65878 4.75692 4.91448 4.97463 5.16033 5.19257 5.23532 5.24933 5.33421 5.39211 5.50134 5.68189 5.72620 5.86950 5.93625 5.98747 6.14088 6.19828 6.38458 6.52246 6.68309 7.15212 7.26323 7.64336 7.77092 7.82860 8.59614 9.02644 9.53533 11.05957 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.002682 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.165588 B =10438.466205 C =11751.001766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.451 5.451 11 C -0.005 4.005 12 C 0.054 3.946 13 O -0.370 6.370 14 C 0.141 3.859 15 C 0.028 3.972 16 C -0.171 4.171 17 C 0.028 3.972 18 C 0.046 3.954 19 C -0.162 4.162 20 C -0.215 4.215 21 C -0.015 4.015 22 O -0.157 6.157 23 O 0.122 5.878 24 N -0.351 5.351 25 C -0.006 4.006 26 H 0.264 0.736 27 H 0.029 0.971 28 H -0.002 1.002 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.213 0.787 38 H 0.083 0.917 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.553 -6.132 11.120 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.099 0.901 9 C 0.004 3.996 10 N -0.175 5.175 11 C -0.135 4.135 12 C -0.004 4.004 13 O -0.287 6.287 14 C 0.064 3.936 15 C -0.129 4.129 16 C -0.192 4.192 17 C -0.036 4.036 18 C -0.005 4.005 19 C -0.182 4.182 20 C -0.234 4.234 21 C -0.084 4.084 22 O -0.053 6.053 23 O 0.052 5.948 24 N -0.054 5.054 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.016 0.984 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.200 0.800 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.229 0.771 38 H 0.102 0.898 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 25.648 -7.336 10.590 28.701 hybrid contribution 0.772 2.149 0.451 2.327 sum 26.420 -5.188 11.041 29.100 Atomic orbital electron populations 1.69894 1.06112 1.26864 1.50947 1.24924 0.94779 0.98865 0.94844 0.86863 0.80339 0.84034 0.78548 1.20231 1.19213 1.21021 1.20949 0.88456 0.94844 1.50350 0.90142 1.20729 0.98089 0.85013 0.95798 1.68931 1.09788 1.23867 1.14934 1.24291 0.95271 1.00024 0.93893 1.24070 0.85101 0.99733 0.91470 1.87901 1.48076 1.27686 1.65062 1.20389 0.90925 0.87481 0.94836 1.23115 0.99587 0.89949 1.00206 1.22707 0.95617 1.00864 1.00022 1.20560 0.97728 0.84069 1.01238 1.18118 0.98362 0.80814 1.03209 1.21983 0.95847 1.00637 0.99728 1.21823 1.04013 0.91873 1.05712 1.24371 0.88776 0.99954 0.95310 1.84087 1.45908 1.18746 1.56521 1.84971 1.39878 1.17176 1.52807 1.73782 1.00771 1.21489 1.09372 1.24124 0.93011 0.97842 0.98506 0.92612 0.95318 0.98415 0.90898 0.89928 0.88101 0.90428 0.90568 0.79963 0.82317 0.82550 0.77081 0.89829 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.71 9.94 -34.44 -0.34 -15.05 16 8 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.13 3.20 3.64 -4.98 -0.02 3.18 16 10 N -0.45 -9.46 6.32 -246.10 -1.55 -11.02 16 11 C -0.01 -0.10 7.55 -7.54 -0.06 -0.15 16 12 C 0.05 0.78 4.65 -26.20 -0.12 0.66 16 13 O -0.37 -5.06 9.87 -35.23 -0.35 -5.40 16 14 C 0.14 1.61 6.40 36.00 0.23 1.84 16 15 C 0.03 0.34 7.26 -82.25 -0.60 -0.25 16 16 C -0.17 -2.04 10.49 -38.96 -0.41 -2.44 16 17 C 0.03 0.31 7.31 -36.39 -0.27 0.04 16 18 C 0.05 0.46 7.17 -36.72 -0.26 0.19 16 19 C -0.16 -1.29 10.86 -39.34 -0.43 -1.72 16 20 C -0.22 -1.35 10.88 -39.84 -0.43 -1.79 16 21 C -0.02 -0.10 12.08 29.54 0.36 0.26 16 22 O -0.16 -1.51 10.67 4.55 0.05 -1.47 16 23 O 0.12 1.41 11.23 15.60 0.18 1.59 16 24 N -0.35 -4.41 12.05 33.52 0.40 -4.00 16 25 C -0.01 -0.09 7.52 -7.54 -0.06 -0.15 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 28 H 0.00 -0.05 6.73 -51.93 -0.35 -0.39 16 29 H 0.07 1.36 7.42 -51.93 -0.39 0.97 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.10 1.26 7.88 -51.93 -0.41 0.85 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.18 2.09 8.04 -52.49 -0.42 1.67 16 35 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.21 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.17 7.91 -51.93 -0.41 0.75 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -33.17 341.77 -7.42 -40.59 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.90 Total: -1.81 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -2.50 Total: -13.50 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.38 Total: -42.04 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.12 Total: -5.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.17 -7.42 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222713549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.657 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds