Wall clock time and date at job start Tue Mar 31 2020 08:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86806 * 119.99682 * 2 1 4 4 H 1.48496 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47364 * 300.00059 * 3 2 1 6 6 H 1.48501 * 109.46866 * 60.00399 * 3 2 1 7 7 C 1.40022 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.41339 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.40621 * 119.78704 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.12881 * 180.02562 * 10 9 7 12 12 C 1.38693 * 118.66676 * 0.02562 * 11 10 9 13 13 C 1.39632 * 119.50132 * 0.02562 * 12 11 10 14 14 N 1.39270 * 119.57927 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00287 * 174.67436 * 14 13 12 16 16 O 1.21268 * 119.99747 * 5.14507 * 15 14 13 17 17 C 1.50696 * 120.00057 * 185.15246 * 15 14 13 18 18 H 1.09004 * 110.43529 * 302.53963 * 17 15 14 19 19 C 1.54276 * 110.48736 * 65.21916 * 17 15 14 20 20 C 1.53877 * 106.59495 * 142.28890 * 19 17 15 21 21 C 1.54263 * 106.59976 * 0.02562 * 20 19 17 22 22 H 1.08998 * 110.48715 * 95.06852 * 21 20 19 23 23 C 1.50702 * 110.48578 * 217.71134 * 21 20 19 24 24 O 1.20827 * 119.99982 * 114.77090 * 23 21 20 25 25 O 1.34231 * 119.99775 * 294.78008 * 23 21 20 26 26 C 1.54882 * 110.48740 * 179.97438 * 17 15 14 27 27 N 1.31938 * 120.84802 * 359.97438 * 13 12 11 28 28 H 0.96996 * 120.00242 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.43628 * 0.02562 * 10 9 7 30 30 H 1.07996 * 120.66657 * 180.27472 * 11 10 9 31 31 H 1.08003 * 120.25459 * 179.97438 * 12 11 10 32 32 H 0.97005 * 119.99700 * 354.67207 * 14 13 12 33 33 H 1.09000 * 110.03050 * 261.57622 * 19 17 15 34 34 H 1.08998 * 110.02998 * 23.00792 * 19 17 15 35 35 H 1.09000 * 110.02793 * 240.71534 * 20 19 17 36 36 H 1.09001 * 110.06708 * 119.31232 * 20 19 17 37 37 H 0.96705 * 116.99810 * 180.02562 * 25 23 21 38 38 H 1.09000 * 110.75645 * 321.69181 * 26 17 15 39 39 H 1.08999 * 110.76069 * 85.06437 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3466 -0.0006 5 1 1.8826 2.3966 -1.2124 6 1 1.8826 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0877 -1.2125 -0.0001 9 6 1.3010 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0016 11 6 1.3034 -4.8416 -0.0022 12 6 -0.0827 -4.7934 -0.0021 13 6 -0.7277 -3.5550 -0.0021 14 7 -2.1195 -3.5048 -0.0016 15 6 -2.7510 -2.3190 0.1068 16 8 -2.1108 -1.2891 0.1098 17 6 -4.2527 -2.2731 0.2243 18 1 -4.7166 -2.7667 -0.6297 19 6 -4.7112 -2.9273 1.5441 20 6 -5.8964 -2.0924 2.0600 21 6 -6.1170 -0.9604 1.0354 22 1 -6.8838 -1.2429 0.3141 23 6 -6.4960 0.3188 1.7363 24 8 -5.7558 1.2728 1.6942 25 8 -7.6558 0.3981 2.4073 26 6 -4.7431 -0.8083 0.3366 27 7 -0.0356 -2.4318 -0.0016 28 1 -0.4850 0.8400 0.0004 29 1 3.0886 -3.6560 -0.0021 30 1 1.8216 -5.7891 0.0015 31 1 -0.6589 -5.7069 -0.0030 32 1 -2.6343 -4.3232 -0.0792 33 1 -5.0291 -3.9538 1.3613 34 1 -3.8989 -2.9113 2.2707 35 1 -5.6591 -1.6713 3.0369 36 1 -6.7897 -2.7132 2.1282 37 1 -7.8557 1.2393 2.8405 38 1 -4.0610 -0.2184 0.9488 39 1 -4.8601 -0.3632 -0.6515 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:03 Heat of formation + Delta-G solvation = -80.838435 kcal Electronic energy + Delta-G solvation = -24797.920151 eV Core-core repulsion = 21091.773627 eV Total energy + Delta-G solvation = -3706.146524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63518 -39.44622 -37.96241 -36.62291 -36.08380 -34.07496 -32.97287 -30.43663 -30.13073 -28.89001 -28.61821 -25.54419 -23.84039 -22.32274 -21.36802 -20.72937 -20.05847 -19.09232 -18.12305 -17.69476 -17.03937 -16.29710 -16.04494 -15.76024 -15.06455 -14.63385 -14.42357 -14.06658 -13.94159 -13.60196 -13.35078 -12.98993 -12.84038 -12.26154 -12.09133 -11.95310 -11.69740 -11.60547 -11.30547 -11.16520 -11.04801 -10.91671 -10.85350 -10.70355 -10.60651 -10.44836 -10.41929 -9.88393 -9.63899 -8.99105 -8.87054 -7.93988 -7.17518 -6.93395 -6.10614 -4.37119 2.12402 2.80136 2.89569 3.09541 3.21081 3.24305 3.29076 3.74576 3.86570 4.09731 4.37166 4.44385 4.73885 4.95498 5.18625 5.25020 5.29163 5.35785 5.41577 5.50067 5.65201 5.79268 5.90544 6.06709 6.08985 6.15043 6.23262 6.35348 6.51291 6.53310 6.72137 6.86530 6.87700 7.27405 7.58018 7.65755 7.79711 7.83639 8.10368 8.23206 8.50615 8.77604 9.08113 9.31504 10.27804 10.51477 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.004710 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.798974 B = 5943.131257 C = 7719.999817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.654 5.654 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.372 3.628 14 N -0.666 5.666 15 C 0.475 3.525 16 O -0.403 6.403 17 C -0.113 4.113 18 H 0.095 0.905 19 C -0.114 4.114 20 C -0.107 4.107 21 C -0.088 4.088 22 H 0.112 0.888 23 C 0.482 3.518 24 O -0.505 6.505 25 O -0.520 6.520 26 C -0.087 4.087 27 N -0.474 5.474 28 H 0.273 0.727 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.407 0.593 38 H 0.100 0.900 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.517 -3.485 2.512 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.172 4.172 3 Si 0.719 3.281 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.133 3.867 14 N -0.313 5.313 15 C 0.256 3.744 16 O -0.266 6.266 17 C -0.135 4.135 18 H 0.113 0.887 19 C -0.152 4.152 20 C -0.145 4.145 21 C -0.107 4.107 22 H 0.130 0.870 23 C 0.324 3.676 24 O -0.391 6.391 25 O -0.332 6.332 26 C -0.125 4.125 27 N -0.193 5.193 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.265 0.735 38 H 0.118 0.882 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.397 -1.778 2.333 15.673 hybrid contribution 0.320 -0.114 0.228 0.409 sum -15.076 -1.891 2.562 15.409 Atomic orbital electron populations 1.70307 1.05721 1.27421 1.23782 1.26171 0.95135 1.00553 0.95307 0.86479 0.80859 0.82335 0.78427 1.18632 1.20056 1.20054 1.19618 0.94072 0.89378 1.42467 0.89961 1.18398 0.87219 0.91945 0.87906 1.21626 0.98529 0.93564 1.19198 1.20557 0.93231 0.96482 0.95846 1.20486 0.94776 0.94961 1.28200 1.18643 0.83437 0.90882 0.93753 1.43433 1.04995 1.09221 1.73670 1.20522 0.88797 0.84964 0.80086 1.91160 1.65122 1.30834 1.39514 1.22193 0.94471 0.97691 0.99159 0.88699 1.22110 0.97745 0.98917 0.96398 1.22057 0.99116 0.95378 0.97917 1.21957 1.00425 0.90256 0.98083 0.87005 1.23479 0.77954 0.90321 0.75895 1.90774 1.51109 1.39081 1.58150 1.84546 1.40222 1.44003 1.64455 1.22327 0.92884 0.95659 1.01658 1.68712 1.06987 1.23247 1.20317 0.91552 0.88632 0.88706 0.89174 0.76908 0.90694 0.90674 0.91230 0.90356 0.73464 0.88150 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.40 8.99 55.55 0.50 -17.90 16 2 C 0.06 1.54 5.50 -17.35 -0.10 1.45 16 3 Si 0.89 19.71 29.56 -169.99 -5.02 14.69 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.42 -11.85 9.14 -37.73 -0.34 -12.19 16 8 H 0.08 2.16 7.85 -52.48 -0.41 1.74 16 9 C 0.27 7.68 6.55 -85.00 -0.56 7.12 16 10 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.05 9.95 -38.89 -0.39 -8.43 16 13 C 0.37 9.03 7.43 -154.96 -1.15 7.88 16 14 N -0.67 -12.78 5.37 -11.40 -0.06 -12.84 16 15 C 0.48 9.24 6.95 -10.99 -0.08 9.17 16 16 O -0.40 -10.03 11.49 5.57 0.06 -9.96 16 17 C -0.11 -1.50 3.26 -90.11 -0.29 -1.80 16 18 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 19 C -0.11 -1.24 6.35 -25.61 -0.16 -1.40 16 20 C -0.11 -1.02 6.36 -25.61 -0.16 -1.18 16 21 C -0.09 -0.93 3.37 -90.11 -0.30 -1.23 16 22 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 23 C 0.48 5.79 7.48 36.01 0.27 6.06 16 24 O -0.50 -8.16 16.47 -18.75 -0.31 -8.47 16 25 O -0.52 -4.58 13.42 -39.26 -0.53 -5.11 16 26 C -0.09 -1.23 4.97 -24.74 -0.12 -1.35 16 27 N -0.47 -13.36 5.74 -10.25 -0.06 -13.42 16 28 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 29 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.40 5.79 8.70 -40.82 -0.36 5.44 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.98 7.83 -51.93 -0.41 0.58 16 35 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.41 2.00 9.10 45.56 0.41 2.41 16 38 H 0.10 1.82 6.78 -51.93 -0.35 1.46 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -35.72 330.93 -8.63 -44.36 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.03 Total: 9.00 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -4.17 Total: -5.33 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.38 Total: -44.16 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.77 Total: -23.54 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.72 -8.63 -44.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.483 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds