Wall clock time and date at job start Tue Mar 31 2020 08:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38125 * 126.30096 * 2 1 4 4 C 1.47288 * 126.42240 * 359.71172 * 3 2 1 5 5 O 1.21519 * 119.99966 * 0.02562 * 4 3 2 6 6 O 1.34757 * 119.99744 * 179.97438 * 4 3 2 7 7 C 1.45195 * 116.99661 * 180.02562 * 6 4 3 8 8 C 1.50708 * 109.47059 * 180.02562 * 7 6 4 9 9 C 1.35317 * 126.12451 * 359.69085 * 8 7 6 10 10 C 1.39867 * 107.91904 * 179.90588 * 9 8 7 11 11 N 1.30836 * 108.20231 * 0.36212 * 10 9 8 12 12 N 1.34936 * 126.12896 * 179.97438 * 8 7 6 13 13 C 1.46503 * 126.03787 * 359.94681 * 12 8 7 14 14 C 1.41343 * 107.14628 * 179.73461 * 3 2 1 15 15 N 1.30425 * 108.01629 * 0.02562 * 14 3 2 16 16 N 1.34231 * 126.29226 * 179.68772 * 2 1 3 17 17 C 1.46504 * 125.74268 * 0.23993 * 16 2 1 18 18 C 1.50699 * 109.46925 * 90.00181 * 17 16 2 19 19 H 1.08004 * 119.99967 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00174 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47103 * 90.00298 * 22 20 18 24 24 H 1.48506 * 109.47010 * 210.00105 * 22 20 18 25 25 H 1.48493 * 109.47165 * 330.00239 * 22 20 18 26 26 H 1.08997 * 109.47320 * 90.02631 * 1 2 3 27 27 H 1.09001 * 109.47680 * 210.02517 * 1 2 3 28 28 H 1.09005 * 109.47158 * 330.02739 * 1 2 3 29 29 H 1.09005 * 109.47159 * 299.99984 * 7 6 4 30 30 H 1.08997 * 109.47415 * 60.00561 * 7 6 4 31 31 H 1.08001 * 126.04061 * 0.02830 * 9 8 7 32 32 H 1.08002 * 125.89394 * 180.13729 * 10 9 8 33 33 H 1.09002 * 109.47322 * 89.99623 * 13 12 8 34 34 H 1.08998 * 109.47382 * 209.99245 * 13 12 8 35 35 H 1.08997 * 109.47030 * 329.99519 * 13 12 8 36 36 H 1.08006 * 125.98937 * 179.97438 * 14 3 2 37 37 H 1.08994 * 109.46858 * 210.00004 * 17 16 2 38 38 H 1.08995 * 109.47357 * 330.00413 * 17 16 2 39 39 H 0.97003 * 119.99913 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 -0.0060 5 8 0.7019 2.7872 -0.0111 6 8 2.8016 3.5095 -0.0047 7 6 2.2984 4.8715 -0.0102 8 6 3.4571 5.8351 -0.0085 9 6 4.7693 5.5049 0.0032 10 6 5.5115 6.6904 -0.0018 11 7 4.6749 7.6963 -0.0081 12 7 3.3720 7.1818 -0.0129 13 6 2.1353 7.9672 -0.0214 14 6 3.6599 0.6494 0.0063 15 7 3.6339 -0.6546 0.0092 16 7 2.3015 -1.0819 0.0059 17 6 1.8496 -2.4755 0.0085 18 6 1.6995 -2.9575 -1.4114 19 1 1.9192 -2.2925 -2.2335 20 6 1.2828 -4.2479 -1.6610 21 7 1.0158 -5.0579 -0.6599 22 14 1.0975 -4.8456 -3.4211 23 1 2.3803 -5.4354 -3.8812 24 1 0.0286 -5.8746 -3.4844 25 1 0.7362 -3.7020 -4.2967 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3634 0.8903 0.5134 29 1 1.6942 5.0320 -0.9032 30 1 1.6869 5.0366 0.8768 31 1 5.1724 4.5029 0.0125 32 1 6.5891 6.7629 0.0028 33 1 1.8234 8.1650 1.0041 34 1 2.3082 8.9118 -0.5371 35 1 1.3541 7.4092 -0.5375 36 1 4.5462 1.2667 0.0075 37 1 2.5824 -3.0940 0.5266 38 1 0.8892 -2.5451 0.5192 39 1 0.7223 -5.9656 -0.8355 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889650737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:00 Heat of formation + Delta-G solvation = 45.699263 kcal Electronic energy + Delta-G solvation = -23688.768304 eV Core-core repulsion = 20020.401618 eV Total energy + Delta-G solvation = -3668.366687 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44977 -42.20637 -40.87893 -37.48087 -35.82301 -34.30922 -33.89632 -32.91880 -32.29236 -29.50334 -28.42944 -27.70144 -27.34405 -25.43288 -23.86587 -22.29302 -21.57471 -20.90122 -20.44601 -18.91899 -18.70689 -17.95976 -17.61946 -17.34961 -16.70402 -16.47674 -16.22075 -15.91947 -15.30752 -15.07861 -14.74230 -14.53803 -14.33581 -14.18326 -14.04279 -13.70072 -13.58288 -13.52754 -13.24590 -13.12696 -13.00390 -12.93969 -12.69954 -12.31007 -11.96763 -11.89803 -11.85377 -11.70619 -11.28921 -10.75414 -10.31468 -10.26624 -9.65286 -9.49876 -8.37554 -6.53514 0.43103 0.78677 1.11350 1.21638 1.38734 1.40323 1.50148 1.64054 1.86977 2.03032 2.24099 2.33582 2.95456 3.37632 3.66363 3.68492 3.79694 3.96622 4.07617 4.13365 4.18359 4.37568 4.41188 4.51390 4.61585 4.65673 4.71961 4.77229 4.80264 4.89636 4.99438 5.13843 5.21206 5.37159 5.49850 5.62626 5.72752 5.74703 5.97444 5.98831 6.54832 6.67452 6.73782 6.86728 7.17729 8.70495 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.028918 B = 0.002673 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.023054 B =10471.991236 C =10725.632866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.162 3.838 3 C -0.321 4.321 4 C 0.565 3.435 5 O -0.537 6.537 6 O -0.340 6.340 7 C 0.140 3.860 8 C 0.066 3.934 9 C -0.261 4.261 10 C 0.043 3.957 11 N -0.322 5.322 12 N -0.373 5.373 13 C 0.086 3.914 14 C 0.099 3.901 15 N -0.336 5.336 16 N -0.334 5.334 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.053 0.947 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.970 3.030 23 H -0.274 1.274 24 H -0.272 1.272 25 H -0.268 1.268 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.160 0.840 32 H 0.212 0.788 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.034 0.966 38 H 0.056 0.944 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 21.780 1.774 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.025 3.975 3 C -0.334 4.334 4 C 0.413 3.587 5 O -0.429 6.429 6 O -0.255 6.255 7 C 0.065 3.935 8 C -0.062 4.062 9 C -0.290 4.290 10 C -0.142 4.142 11 N -0.145 5.145 12 N -0.158 5.158 13 C -0.054 4.054 14 C -0.088 4.088 15 N -0.155 5.155 16 N -0.110 5.110 17 C 0.147 3.853 18 C -0.594 4.594 19 H 0.072 0.928 20 C -0.176 4.176 21 N -0.554 5.554 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.193 1.193 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.178 0.822 32 H 0.228 0.772 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.241 0.759 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.188 21.805 1.840 21.915 hybrid contribution -0.378 -0.791 -0.694 1.118 sum 0.810 21.014 1.145 21.061 Atomic orbital electron populations 1.20670 0.85055 1.04664 1.04533 1.21966 0.96116 0.86292 0.93085 1.18966 0.93807 0.89768 1.30848 1.19640 0.83140 0.84505 0.71452 1.90765 1.18314 1.84562 1.49252 1.86462 1.39062 1.15234 1.84775 1.21025 0.91500 0.76336 1.04649 1.20571 0.96832 0.85129 1.03626 1.21576 0.91399 1.00833 1.15218 1.24385 1.01335 0.89724 0.98714 1.77343 0.87472 1.23557 1.26093 1.48701 1.06738 1.03140 1.57236 1.22256 0.80965 0.97310 1.04905 1.24583 0.97875 0.91219 0.95158 1.77187 0.98181 1.14270 1.25888 1.49190 1.03432 1.07917 1.50465 1.19452 0.95595 0.71946 0.98281 1.21391 1.47952 0.98517 0.91551 0.92849 1.25698 0.93830 0.95970 1.02129 1.69988 1.44763 1.07678 1.32949 0.85366 0.78254 0.78256 0.78721 1.20004 1.19685 1.19291 0.89188 0.90465 0.87492 0.88312 0.88158 0.82212 0.77180 0.89210 0.88261 0.87618 0.75851 0.94841 0.92581 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.00 9.56 71.23 0.68 -2.31 16 2 C 0.16 6.24 7.01 42.16 0.30 6.53 16 3 C -0.32 -11.02 6.13 -20.16 -0.12 -11.14 16 4 C 0.57 16.89 7.95 70.20 0.56 17.45 16 5 O -0.54 -17.04 14.64 19.77 0.29 -16.75 16 6 O -0.34 -8.35 9.36 -56.68 -0.53 -8.88 16 7 C 0.14 2.69 5.44 71.24 0.39 3.08 16 8 C 0.07 1.34 6.91 41.41 0.29 1.63 16 9 C -0.26 -5.40 10.14 21.99 0.22 -5.17 16 10 C 0.04 0.83 12.03 85.24 1.02 1.86 16 11 N -0.32 -7.22 12.58 -57.02 -0.72 -7.94 16 12 N -0.37 -7.18 4.01 -356.03 -1.43 -8.61 16 13 C 0.09 0.89 11.27 127.77 1.44 2.33 16 14 C 0.10 3.32 11.87 85.67 1.02 4.34 16 15 N -0.34 -14.20 12.50 -56.25 -0.70 -14.91 16 16 N -0.33 -14.81 3.56 -336.66 -1.20 -16.01 16 17 C 0.27 13.18 5.97 85.63 0.51 13.69 16 18 C -0.56 -29.68 9.39 25.60 0.24 -29.44 16 19 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 20 C 0.03 1.33 5.46 84.65 0.46 1.79 16 21 N -0.92 -50.01 13.29 21.45 0.28 -49.72 16 22 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.08 2.51 7.04 -2.39 -0.02 2.49 16 28 H 0.11 3.17 6.52 -2.38 -0.02 3.16 16 29 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.16 3.04 7.84 -2.91 -0.02 3.02 16 32 H 0.21 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 0.69 7.79 -2.39 -0.02 0.67 16 36 H 0.23 5.42 8.06 -2.91 -0.02 5.40 16 37 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 2.75 7.01 -2.39 -0.02 2.73 16 39 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -66.90 347.19 6.10 -60.80 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.07 Total: 13.73 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 7.00 Total: 4.63 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -3.76 Total: -97.19 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.24 Total: -25.63 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -66.90 6.10 -60.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889650737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.499 kcal (2) G-P(sol) polarization free energy of solvation -66.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds