Wall clock time and date at job start Tue Mar 31 2020 09:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 N 1.46500 * 109.47192 * 180.02562 * 3 2 1 5 5 C 1.46503 * 119.99580 * 274.99613 * 4 3 2 6 6 C 1.50699 * 109.47324 * 274.99682 * 5 4 3 7 7 N 1.34775 * 120.00397 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99784 * 0.02562 * 6 5 4 9 9 S 1.65593 * 120.00367 * 94.99456 * 4 3 2 10 10 O 1.42103 * 104.28009 * 153.92629 * 9 4 3 11 11 O 1.42104 * 104.27809 * 26.07378 * 9 4 3 12 12 C 1.81394 * 104.45333 * 270.00043 * 9 4 3 13 13 C 1.52999 * 109.47508 * 186.31729 * 12 9 4 14 14 C 1.50701 * 115.55172 * 294.31445 * 13 12 9 15 15 H 1.07994 * 119.99801 * 91.81286 * 14 13 12 16 16 C 1.37880 * 119.99662 * 271.81562 * 14 13 12 17 17 N 1.31516 * 119.99265 * 183.17438 * 16 14 13 18 18 Si 1.86794 * 120.00153 * 3.17250 * 16 14 13 19 19 H 1.48497 * 109.47170 * 265.87278 * 18 16 14 20 20 H 1.48499 * 109.47548 * 25.87892 * 18 16 14 21 21 H 1.48502 * 109.46988 * 145.87577 * 18 16 14 22 22 C 1.53004 * 117.49856 * 79.98490 * 13 12 9 23 23 C 1.52998 * 117.49812 * 148.64177 * 13 12 9 24 24 H 1.09000 * 109.47272 * 60.00660 * 1 2 3 25 25 H 1.09008 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47585 * 300.00017 * 1 2 3 27 27 H 1.08998 * 109.47585 * 239.99983 * 2 1 3 28 28 H 1.09000 * 109.47272 * 119.99340 * 2 1 3 29 29 H 1.08989 * 109.47583 * 59.99760 * 3 2 1 30 30 H 1.09000 * 109.46624 * 299.99737 * 3 2 1 31 31 H 1.08993 * 109.47492 * 34.99996 * 5 4 3 32 32 H 1.09005 * 109.46864 * 155.00127 * 5 4 3 33 33 H 0.96998 * 119.99568 * 0.02562 * 7 6 5 34 34 H 0.96993 * 120.00036 * 180.02562 * 7 6 5 35 35 H 1.09007 * 109.47311 * 66.31725 * 12 9 4 36 36 H 1.09002 * 109.47000 * 306.32305 * 12 9 4 37 37 H 0.97006 * 119.99210 * 179.97438 * 17 16 14 38 38 H 1.08995 * 117.49795 * 215.00489 * 22 13 12 39 39 H 1.08998 * 117.49827 * 0.02562 * 22 13 12 40 40 H 1.08996 * 117.50403 * 359.97438 * 23 13 12 41 41 H 1.09004 * 117.50085 * 144.97788 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2378 1.3320 1.2630 6 6 4.3820 2.6986 1.8815 7 7 5.0259 2.8420 3.0568 8 8 3.9177 3.6695 1.3221 9 16 4.3323 1.5677 -1.4295 10 8 5.5789 2.1433 -1.0635 11 8 3.4359 2.2511 -2.2949 12 6 4.5586 -0.1479 -1.9734 13 6 5.4534 -0.1759 -3.2141 14 6 4.8745 0.4677 -4.4477 15 1 5.0661 1.5105 -4.6532 16 6 4.1003 -0.2748 -5.3139 17 7 3.6470 0.2696 -6.4219 18 14 3.6953 -2.0539 -4.9136 19 1 4.6861 -2.9462 -5.5672 20 1 3.7434 -2.2538 -3.4429 21 1 2.3342 -2.3760 -5.4126 22 6 6.9637 -0.0588 -2.9987 23 6 6.3506 -1.3995 -3.4105 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8898 30 1 1.6765 1.9563 -0.8900 31 1 3.6908 0.6806 1.9446 32 1 5.2261 0.9125 1.0743 33 1 5.3968 2.0655 3.5044 34 1 5.1183 3.7215 3.4550 35 1 3.5889 -0.5834 -2.2149 36 1 5.0265 -0.7235 -1.1748 37 1 3.1026 -0.2529 -7.0315 38 1 7.5385 0.4838 -3.7491 39 1 7.3197 0.0378 -1.9730 40 1 6.3038 -2.1844 -2.6557 41 1 6.5219 -1.7393 -4.4320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364852607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:55 Heat of formation + Delta-G solvation = -84.546442 kcal Electronic energy + Delta-G solvation = -24691.413169 eV Core-core repulsion = 21120.549805 eV Total energy + Delta-G solvation = -3570.863364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.51876 -37.15746 -36.68272 -36.26910 -35.09734 -33.72168 -32.83871 -32.16247 -28.54391 -28.08384 -25.59517 -25.02302 -21.76127 -21.62198 -20.89331 -19.35635 -18.50630 -17.57333 -17.16398 -17.00581 -16.51259 -15.89301 -15.22997 -14.99268 -14.82485 -14.59440 -14.22614 -13.96381 -13.90955 -13.33914 -13.01048 -12.68676 -12.46310 -12.38048 -12.18186 -11.90525 -11.49778 -11.38251 -11.26191 -11.18895 -10.99518 -10.93242 -10.68781 -10.54534 -10.38335 -10.25660 -10.07753 -9.75297 -9.70151 -9.17733 -8.94501 -8.67084 -8.44059 -6.16151 -4.24151 0.86719 2.63563 3.10551 3.21269 3.31148 3.33545 3.51183 4.34601 4.53267 4.64762 4.69694 4.80599 4.87687 5.00725 5.03095 5.07258 5.13522 5.25092 5.37985 5.41155 5.68629 5.73107 5.82413 5.88756 5.95039 6.01609 6.06087 6.15450 6.25337 6.33511 6.40000 6.60872 6.65517 6.73486 6.87393 7.04278 7.24382 7.58843 8.24022 8.37430 8.89424 9.44316 10.95336 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.006150 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.921617 B = 4552.048705 C = 5299.236235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.151 4.151 3 C 0.116 3.884 4 N -0.992 5.992 5 C 0.107 3.893 6 C 0.499 3.501 7 N -0.860 5.860 8 O -0.524 6.524 9 S 2.612 3.388 10 O -0.961 6.961 11 O -0.930 6.930 12 C -0.576 4.576 13 C 0.001 3.999 14 C -0.510 4.510 15 H 0.087 0.913 16 C 0.088 3.912 17 N -0.882 5.882 18 Si 0.873 3.127 19 H -0.276 1.276 20 H -0.256 1.256 21 H -0.290 1.290 22 C -0.177 4.177 23 C -0.185 4.185 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.399 0.601 34 H 0.400 0.600 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.267 0.733 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -4.316 20.169 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C -0.009 4.009 4 N -0.825 5.825 5 C -0.024 4.024 6 C 0.281 3.719 7 N -0.425 5.425 8 O -0.398 6.398 9 S 2.708 3.292 10 O -0.952 6.952 11 O -0.920 6.920 12 C -0.708 4.708 13 C -0.001 4.001 14 C -0.547 4.547 15 H 0.105 0.895 16 C -0.116 4.116 17 N -0.517 5.517 18 Si 0.700 3.300 19 H -0.202 1.202 20 H -0.180 1.180 21 H -0.216 1.216 22 C -0.214 4.214 23 C -0.223 4.223 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.227 0.773 34 H 0.230 0.770 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.070 -2.978 19.067 19.328 hybrid contribution -0.103 -1.822 0.710 1.958 sum -1.173 -4.801 19.777 20.385 Atomic orbital electron populations 1.21694 0.95025 1.01871 1.02252 1.22077 0.96627 0.97660 1.02636 1.21430 0.78229 0.96370 1.04879 1.57745 1.15038 1.89565 1.20159 1.20988 0.99041 0.94335 0.88012 1.21346 0.77313 0.92523 0.80702 1.43851 1.60871 1.13366 1.24412 1.90769 1.47113 1.40763 1.61159 1.05229 0.73833 0.77924 0.72200 1.93501 1.44349 1.75302 1.82026 1.93568 1.64217 1.70346 1.63897 1.30408 1.09810 1.23282 1.07269 1.18864 0.87893 1.00306 0.93075 1.20351 1.32146 0.98831 1.03336 0.89535 1.24957 0.94283 0.98181 0.94224 1.69901 1.34103 1.37192 1.10479 0.86927 0.77590 0.85485 0.79960 1.20186 1.17970 1.21649 1.23028 0.97136 1.00307 1.00973 1.22987 1.06860 0.91042 1.01439 0.91985 0.92527 0.92697 0.91414 0.91679 0.90472 0.88207 0.87586 0.87232 0.77268 0.76965 0.85550 0.87705 0.92284 0.88609 0.90059 0.90658 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.15 0.37 -1.16 16 2 C -0.15 -1.73 6.26 -26.73 -0.17 -1.90 16 3 C 0.12 1.62 5.64 -4.04 -0.02 1.60 16 4 N -0.99 -15.22 2.21 -115.67 -0.26 -15.47 16 5 C 0.11 1.20 5.74 -5.19 -0.03 1.17 16 6 C 0.50 6.57 8.17 -10.99 -0.09 6.48 16 7 N -0.86 -6.87 8.87 31.22 0.28 -6.59 16 8 O -0.52 -9.74 17.26 5.55 0.10 -9.65 16 9 S 2.61 53.76 5.11 -107.50 -0.55 53.21 16 10 O -0.96 -21.23 16.99 -57.54 -0.98 -22.21 16 11 O -0.93 -23.34 16.22 -57.54 -0.93 -24.27 16 12 C -0.58 -11.18 5.63 37.16 0.21 -10.97 16 13 C 0.00 0.03 0.77 -155.66 -0.12 -0.09 16 14 C -0.51 -14.37 8.82 -34.44 -0.30 -14.67 16 15 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 16 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 17 N -0.88 -26.84 13.96 55.43 0.77 -26.07 16 18 Si 0.87 20.86 24.91 -169.99 -4.23 16.63 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.26 -5.54 5.70 56.52 0.32 -5.22 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.18 -3.63 9.96 -26.69 -0.27 -3.89 16 23 C -0.18 -3.77 7.56 -26.70 -0.20 -3.97 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.87 7.21 -51.93 -0.37 0.49 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.95 8.11 -51.94 -0.42 0.52 16 30 H 0.10 1.62 6.81 -51.93 -0.35 1.27 16 31 H 0.11 0.72 8.11 -51.93 -0.42 0.29 16 32 H 0.11 1.05 7.61 -51.93 -0.40 0.65 16 33 H 0.40 1.63 8.83 -40.82 -0.36 1.27 16 34 H 0.40 2.90 8.93 -40.82 -0.36 2.54 16 35 H 0.13 2.42 5.81 -51.92 -0.30 2.12 16 36 H 0.10 1.56 8.09 -51.92 -0.42 1.14 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.09 1.98 7.25 -51.93 -0.38 1.60 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -38.78 349.46 -7.64 -46.43 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.38 Total: 7.70 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -0.72 Total: -24.98 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.80 Total: -48.13 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -1.82 Total: -56.12 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.23 Total: 16.63 kcal Atomic # 16 Polarization: 53.76 SS G_CDS: -0.55 Total: 53.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -38.78 -7.64 -46.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364852607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.121 kcal (2) G-P(sol) polarization free energy of solvation -38.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds