Wall clock time and date at job start Tue Mar 31 2020 08:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48497 * 109.47396 * 274.64521 * 3 2 1 5 5 H 1.48500 * 109.47093 * 34.64869 * 3 2 1 6 6 H 1.48504 * 109.46853 * 154.64291 * 3 2 1 7 7 C 1.37871 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00424 * 4.69544 * 7 2 1 9 9 C 1.50704 * 119.99923 * 184.70181 * 7 2 1 10 10 H 1.08995 * 109.49943 * 334.76701 * 9 7 2 11 11 C 1.53044 * 109.52252 * 214.68905 * 9 7 2 12 12 C 1.53035 * 109.53786 * 178.66883 * 11 9 7 13 13 C 1.52762 * 109.38796 * 61.23470 * 12 11 9 14 14 N 1.46921 * 109.00849 * 305.59606 * 13 12 11 15 15 C 1.34784 * 120.62858 * 233.57825 * 14 13 12 16 16 O 1.21691 * 119.99954 * 184.78369 * 15 14 13 17 17 C 1.46421 * 119.99792 * 4.51135 * 15 14 13 18 18 C 1.34808 * 120.00395 * 173.16973 * 17 15 14 19 19 C 1.47222 * 119.99340 * 349.23657 * 18 17 15 20 20 C 1.39833 * 120.57117 * 133.91920 * 19 18 17 21 21 N 1.31620 * 120.58429 * 180.02562 * 20 19 18 22 22 C 1.31954 * 121.93001 * 359.97438 * 21 20 19 23 23 C 1.38586 * 121.10372 * 359.97438 * 22 21 20 24 24 F 1.35096 * 120.35835 * 180.02562 * 23 22 21 25 25 C 1.38542 * 119.27886 * 359.76499 * 23 22 21 26 26 C 1.46920 * 118.74363 * 53.30162 * 14 13 12 27 27 H 0.97001 * 120.00074 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46063 * 298.68644 * 11 9 7 29 29 H 1.08995 * 109.46150 * 58.65914 * 11 9 7 30 30 H 1.09003 * 109.50120 * 181.31643 * 12 11 9 31 31 H 1.09003 * 109.49541 * 301.41142 * 12 11 9 32 32 H 1.09000 * 109.51247 * 185.70531 * 13 12 11 33 33 H 1.09003 * 109.43007 * 65.42356 * 13 12 11 34 34 H 1.08007 * 120.00262 * 353.16581 * 17 15 14 35 35 H 1.07994 * 120.00357 * 169.24602 * 18 17 15 36 36 H 1.08003 * 119.70985 * 359.97220 * 20 19 18 37 37 H 1.07994 * 119.44824 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.87669 * 180.27612 * 25 23 22 39 39 H 1.09000 * 109.58720 * 66.43407 * 26 14 13 40 40 H 1.09006 * 109.58939 * 186.71692 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3985 2.1032 -1.3954 5 1 1.4992 2.6223 0.7960 6 1 3.5924 1.4137 0.5996 7 6 2.0045 -1.1940 -0.0005 8 1 1.4672 -2.1277 -0.0775 9 6 3.5077 -1.1963 0.1064 10 1 3.9003 -0.2501 -0.2657 11 6 4.0778 -2.3481 -0.7245 12 6 5.6059 -2.3306 -0.6429 13 6 6.0384 -2.5216 0.8097 14 7 5.3775 -1.5079 1.6429 15 6 6.0992 -0.7082 2.4531 16 8 5.5351 0.0674 3.2022 17 6 7.5617 -0.7768 2.4361 18 6 8.2866 0.1143 3.1415 19 6 7.6312 1.2923 3.7334 20 6 7.8946 1.6633 5.0557 21 7 7.3084 2.7160 5.5853 22 6 6.4581 3.4588 4.9022 23 6 6.1434 3.1599 3.5860 24 9 5.2712 3.9310 2.9006 25 6 6.7372 2.0651 2.9792 26 6 3.9158 -1.3783 1.5717 27 1 -0.4850 0.8400 0.0004 28 1 3.7043 -3.2956 -0.3363 29 1 3.7685 -2.2342 -1.7635 30 1 6.0122 -3.1369 -1.2537 31 1 5.9788 -1.3737 -1.0081 32 1 7.1198 -2.4086 0.8855 33 1 5.7484 -3.5169 1.1465 34 1 8.0598 -1.5415 1.8584 35 1 9.3480 -0.0357 3.2723 36 1 8.5845 1.0804 5.6479 37 1 5.9998 4.3138 5.3767 38 1 6.5140 1.8113 1.9534 39 1 3.4492 -2.2784 1.9719 40 1 3.5970 -0.5125 2.1522 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:12 Heat of formation + Delta-G solvation = -19.221588 kcal Electronic energy + Delta-G solvation = -25197.563086 eV Core-core repulsion = 21506.461258 eV Total energy + Delta-G solvation = -3691.101828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.81182 -40.39077 -39.45607 -37.18038 -34.38656 -33.48892 -32.02347 -31.50919 -30.71914 -29.94607 -25.81962 -25.23359 -24.16057 -23.30911 -21.94611 -21.58565 -19.38175 -18.44892 -17.82566 -17.16071 -17.00509 -16.79933 -16.53024 -15.65816 -15.28233 -14.89155 -14.45971 -14.10328 -13.93434 -13.83069 -13.52413 -13.42394 -13.19546 -13.03225 -12.67522 -12.63022 -12.50914 -12.30449 -12.05831 -11.29656 -11.11359 -10.82211 -10.65092 -10.59312 -10.10833 -9.81274 -9.71007 -9.58197 -9.37644 -9.15994 -9.03527 -8.61443 -8.51218 -8.07863 -6.15118 -4.16288 0.46953 1.11987 1.64121 3.26742 3.38794 3.40096 3.44085 3.44372 3.67076 4.07811 4.38247 4.39167 4.50464 4.62264 4.80101 4.83504 4.91980 5.16261 5.19094 5.29136 5.35325 5.44651 5.58799 5.76791 5.81343 5.87190 5.94126 5.99212 6.08945 6.13981 6.25892 6.37875 6.55893 6.62040 6.63795 6.74312 6.85149 7.21383 7.31065 7.68330 7.79523 7.81816 8.41793 8.50336 8.90004 9.48097 10.97269 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.005992 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.749173 B = 4671.852183 C = 6254.476399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.004 3.996 10 H 0.037 0.963 11 C -0.105 4.105 12 C -0.138 4.138 13 C 0.106 3.894 14 N -0.599 5.599 15 C 0.527 3.473 16 O -0.541 6.541 17 C -0.191 4.191 18 C -0.041 4.041 19 C -0.081 4.081 20 C 0.099 3.901 21 N -0.466 5.466 22 C 0.076 3.924 23 C 0.043 3.957 24 F -0.131 7.131 25 C -0.036 4.036 26 C 0.114 3.886 27 H 0.265 0.735 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.137 0.863 39 H 0.061 0.939 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.867 -0.657 4.331 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.016 4.016 10 H 0.055 0.945 11 C -0.143 4.143 12 C -0.177 4.177 13 C -0.017 4.017 14 N -0.330 5.330 15 C 0.316 3.684 16 O -0.421 6.421 17 C -0.211 4.211 18 C -0.062 4.062 19 C -0.083 4.083 20 C -0.058 4.058 21 N -0.174 5.174 22 C -0.082 4.082 23 C 0.022 3.978 24 F -0.110 7.110 25 C -0.063 4.063 26 C -0.007 4.007 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.155 0.845 39 H 0.079 0.921 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.498 0.095 5.556 20.275 hybrid contribution -0.167 0.574 -1.191 1.332 sum 19.332 0.669 4.365 19.830 Atomic orbital electron populations 1.69900 1.06338 1.27165 1.49654 1.25071 0.94690 0.99029 0.93887 0.86905 0.81008 0.83884 0.78269 1.20426 1.21196 1.18463 1.20882 0.88608 0.94651 1.51161 0.90671 1.19533 0.96939 0.94926 0.90174 0.94515 1.21580 0.91663 1.00035 1.01031 1.21945 0.99121 1.01569 0.95027 1.21700 0.96766 0.91728 0.91466 1.48502 1.09440 1.34660 1.40363 1.18459 0.87753 0.81194 0.80974 1.90854 1.72633 1.38674 1.39897 1.23371 0.94186 1.01971 1.01606 1.22176 0.99271 0.91403 0.93312 1.19713 0.97674 0.95729 0.95196 1.22863 0.97838 0.93388 0.91709 1.67589 1.07721 1.05601 1.36458 1.22819 0.95979 0.99741 0.89688 1.18615 0.93677 0.93008 0.92513 1.91533 1.66673 1.73464 1.79329 1.21626 0.92238 0.91205 1.01199 1.22457 0.75063 1.02048 1.01096 0.92496 0.92740 0.92143 0.91617 0.92168 0.90544 0.91499 0.84273 0.83896 0.82210 0.81973 0.84511 0.92105 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 22.21 27.30 -169.99 -4.64 17.57 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.26 -6.55 6.39 56.52 0.36 -6.19 16 7 C -0.52 -13.98 8.87 -34.44 -0.31 -14.29 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C 0.00 0.09 1.88 -91.65 -0.17 -0.08 16 10 H 0.04 0.87 5.09 -51.93 -0.26 0.60 16 11 C -0.11 -1.91 5.15 -26.69 -0.14 -2.05 16 12 C -0.14 -1.91 6.06 -26.84 -0.16 -2.07 16 13 C 0.11 1.36 6.32 -3.94 -0.02 1.34 16 14 N -0.60 -10.23 2.98 -174.68 -0.52 -10.75 16 15 C 0.53 8.85 6.79 -12.96 -0.09 8.76 16 16 O -0.54 -11.04 11.77 5.20 0.06 -10.98 16 17 C -0.19 -2.19 9.27 -37.51 -0.35 -2.54 16 18 C -0.04 -0.42 9.82 -37.15 -0.36 -0.78 16 19 C -0.08 -1.07 4.43 -104.92 -0.46 -1.53 16 20 C 0.10 1.23 10.96 -17.05 -0.19 1.05 16 21 N -0.47 -6.58 10.34 -12.78 -0.13 -6.72 16 22 C 0.08 1.08 11.16 -17.37 -0.19 0.89 16 23 C 0.04 0.70 7.33 -39.34 -0.29 0.41 16 24 F -0.13 -2.30 17.28 2.25 0.04 -2.26 16 25 C -0.04 -0.57 6.81 -38.73 -0.26 -0.84 16 26 C 0.11 2.42 5.69 -3.71 -0.02 2.40 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.72 5.30 -51.93 -0.28 0.44 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.14 1.13 5.87 -52.48 -0.31 0.82 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.14 2.29 7.36 -52.48 -0.39 1.91 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.96 7.03 -51.93 -0.37 1.60 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -33.43 330.28 -7.56 -40.99 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.00 Total: 0.79 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.12 Total: -7.25 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.12 Total: -43.84 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.98 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.64 Total: 17.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.43 -7.56 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.769 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds