Wall clock time and date at job start Tue Mar 31 2020 08:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86793 * 120.00471 * 2 1 4 4 H 1.48500 * 109.47115 * 240.00365 * 3 2 1 5 5 H 1.48501 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47342 * 119.99868 * 3 2 1 7 7 C 1.38796 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99867 * 179.97438 * 7 2 1 9 9 O 1.34865 * 120.00385 * 359.97438 * 7 2 1 10 10 C 1.34771 * 117.00228 * 179.97438 * 9 7 2 11 11 O 1.21546 * 119.99556 * 0.02562 * 10 9 7 12 12 C 1.47406 * 120.00109 * 180.02562 * 10 9 7 13 13 C 1.39826 * 120.09844 * 180.02562 * 12 10 9 14 14 C 1.37667 * 119.90792 * 180.02562 * 13 12 10 15 15 C 1.39025 * 120.09582 * 359.97438 * 14 13 12 16 16 O 1.35702 * 119.90654 * 179.72312 * 15 14 13 17 17 C 1.42900 * 117.00204 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47205 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.47175 * 294.99901 * 18 17 16 20 20 C 1.53002 * 109.47235 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46762 * 59.99864 * 20 19 18 22 22 C 1.52991 * 109.47482 * 299.99901 * 21 20 19 23 23 C 1.52996 * 109.47282 * 175.00103 * 18 17 16 24 24 C 1.39022 * 120.18885 * 0.02562 * 15 14 13 25 25 C 1.37671 * 120.09732 * 0.02562 * 24 15 14 26 26 H 0.97001 * 120.00120 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.04820 * 359.97438 * 13 12 10 28 28 H 1.07998 * 119.95332 * 179.97438 * 14 13 12 29 29 H 1.08996 * 109.46622 * 300.00280 * 17 16 15 30 30 H 1.09002 * 109.46732 * 59.99694 * 17 16 15 31 31 H 1.08995 * 109.47247 * 54.99756 * 18 17 16 32 32 H 1.08995 * 109.46915 * 300.00058 * 19 18 17 33 33 H 1.08999 * 109.47080 * 59.99822 * 19 18 17 34 34 H 1.09003 * 109.47185 * 300.00260 * 20 19 18 35 35 H 1.08994 * 109.47375 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.46878 * 179.97438 * 21 20 19 37 37 H 1.08998 * 109.47021 * 60.00725 * 21 20 19 38 38 H 1.09003 * 109.47315 * 300.00124 * 22 21 20 39 39 H 1.09009 * 109.47405 * 179.97438 * 22 21 20 40 40 H 1.09003 * 109.46748 * 299.99907 * 23 18 17 41 41 H 1.08995 * 109.47262 * 59.99663 * 23 18 17 42 42 H 1.07999 * 119.94914 * 179.97438 * 24 15 14 43 43 H 1.08000 * 120.04540 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2834 2.7464 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0081 -1.2021 0.0005 8 1 3.0881 -1.2021 0.0001 9 8 1.3337 -2.3700 0.0016 10 6 2.0677 -3.5004 0.0015 11 8 3.2815 -3.4367 0.0010 12 6 1.3984 -4.8137 0.0021 13 6 2.1579 -5.9877 0.0025 14 6 1.5287 -7.2122 0.0025 15 6 0.1403 -7.2826 0.0025 16 8 -0.4759 -8.4917 -0.0032 17 6 -1.9049 -8.4917 -0.0034 18 6 -2.4149 -9.9340 -0.0095 19 6 -2.0101 -10.6126 -1.3197 20 6 -2.5196 -12.0553 -1.3256 21 6 -4.0444 -12.0581 -1.1998 22 6 -4.4492 -11.3796 0.1104 23 6 -3.9397 -9.9364 0.1160 24 6 -0.6188 -6.1179 0.0021 25 6 0.0022 -4.8892 0.0010 26 1 -0.4850 0.8400 -0.0004 27 1 3.2365 -5.9340 0.0021 28 1 2.1146 -8.1195 0.0024 29 1 -2.2682 -7.9819 0.8889 30 1 -2.2680 -7.9736 -0.8910 31 1 -1.9805 -10.4767 0.8300 32 1 -2.4445 -10.0700 -2.1593 33 1 -0.9237 -10.6110 -1.4092 34 1 -2.0847 -12.5976 -0.4860 35 1 -2.2308 -12.5388 -2.2588 36 1 -4.4074 -13.0859 -1.2044 37 1 -4.4792 -11.5158 -2.0394 38 1 -4.0144 -11.9219 0.9499 39 1 -5.5357 -11.3812 0.1998 40 1 -4.2282 -9.4530 1.0494 41 1 -4.3742 -9.3938 -0.7236 42 1 -1.6971 -6.1771 0.0017 43 1 -0.5883 -3.9849 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064060310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:49 Heat of formation + Delta-G solvation = -122.830796 kcal Electronic energy + Delta-G solvation = -23749.216496 eV Core-core repulsion = 20144.789390 eV Total energy + Delta-G solvation = -3604.427106 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23383 -39.15315 -38.51623 -36.86615 -35.03200 -32.46552 -32.16864 -31.07641 -30.79474 -29.78367 -26.46793 -25.40358 -23.19708 -22.76822 -22.66882 -21.28604 -20.08576 -20.00356 -18.07612 -17.73252 -16.94642 -16.10685 -16.06877 -15.38759 -14.94125 -14.53921 -14.49665 -14.40014 -14.36779 -14.24848 -13.99041 -13.24434 -13.20052 -12.87670 -12.66211 -12.50901 -12.36335 -12.05440 -11.84128 -11.52652 -11.46268 -11.44174 -11.22017 -10.87728 -10.80098 -10.60117 -10.47492 -10.45768 -10.38140 -10.27913 -9.83365 -9.06184 -8.79925 -8.59768 -7.98449 -6.45034 -4.07876 1.30573 1.63342 3.10868 3.15067 3.18130 3.22259 3.50121 3.94063 4.29152 4.36383 4.37944 4.44280 4.60285 4.74966 4.89433 4.91373 4.99496 5.10082 5.11008 5.14892 5.15776 5.18320 5.25881 5.31366 5.35775 5.55230 5.60104 5.70186 5.71781 5.78719 5.79814 5.82657 5.84900 5.93307 6.05951 6.14162 6.19612 6.28769 6.52699 6.73718 6.91523 7.05860 7.37806 7.49515 7.93259 8.71476 9.04007 9.84827 10.72932 Molecular weight = 304.15amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.002369 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.155757 B =11815.470472 C =12527.256234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.041 3.959 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.375 4.375 8 H 0.097 0.903 9 O -0.207 6.207 10 C 0.437 3.563 11 O -0.557 6.557 12 C -0.126 4.126 13 C -0.031 4.031 14 C -0.166 4.166 15 C 0.140 3.860 16 O -0.313 6.313 17 C 0.061 3.939 18 C -0.084 4.084 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.221 4.221 25 C -0.031 4.031 26 H 0.271 0.729 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.129 0.871 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 -21.983 -0.837 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.451 4.451 8 H 0.114 0.886 9 O -0.114 6.114 10 C 0.285 3.715 11 O -0.456 6.456 12 C -0.128 4.128 13 C -0.050 4.050 14 C -0.184 4.184 15 C 0.094 3.906 16 O -0.226 6.226 17 C -0.014 4.014 18 C -0.103 4.103 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.240 4.240 25 C -0.049 4.049 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.150 0.850 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.146 0.854 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.705 -21.974 -0.840 24.036 hybrid contribution 0.175 1.024 0.013 1.039 sum -9.530 -20.949 -0.827 23.030 Atomic orbital electron populations 1.69967 1.06047 1.27937 1.45914 1.25366 0.95854 0.98926 0.96225 0.85705 0.78630 0.79222 0.79425 1.19413 1.20354 1.19408 1.21248 0.92514 0.79821 1.51492 0.88567 1.83897 1.39142 1.13246 1.75131 1.20683 0.85846 0.85422 0.79504 1.90623 1.15157 1.87939 1.51834 1.19331 0.93484 0.91817 1.08121 1.21037 1.00550 0.89887 0.93508 1.20238 0.91072 0.98234 1.08866 1.19188 0.92256 0.83887 0.95265 1.85966 1.21047 1.27212 1.88415 1.22894 0.78754 0.98071 1.01699 1.21168 0.95546 0.93927 0.99624 1.21570 1.01554 0.95411 0.96638 1.21539 0.95524 0.96861 1.01804 1.21559 0.96149 1.00374 0.97819 1.21510 1.00470 0.95507 0.97988 1.21528 0.93928 0.97340 1.02341 1.21168 0.99948 0.92093 1.10751 1.21420 0.93859 0.97857 0.91805 0.91928 0.84236 0.85022 0.91854 0.91840 0.90097 0.91966 0.91059 0.91990 0.92005 0.92165 0.91980 0.91877 0.91843 0.91575 0.91533 0.85355 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.05 13.67 55.49 0.76 -24.29 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 3 Si 0.95 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.37 -11.18 9.65 30.94 0.30 -10.88 16 8 H 0.10 2.88 6.86 -52.48 -0.36 2.52 16 9 O -0.21 -6.03 8.98 -21.78 -0.20 -6.23 16 10 C 0.44 11.43 7.83 34.46 0.27 11.70 16 11 O -0.56 -15.59 15.59 -19.30 -0.30 -15.89 16 12 C -0.13 -2.64 5.87 -104.98 -0.62 -3.26 16 13 C -0.03 -0.56 9.59 -39.20 -0.38 -0.94 16 14 C -0.17 -2.50 9.97 -39.50 -0.39 -2.90 16 15 C 0.14 2.06 6.70 -39.00 -0.26 1.80 16 16 O -0.31 -4.01 9.66 -18.81 -0.18 -4.19 16 17 C 0.06 0.60 4.11 37.15 0.15 0.76 16 18 C -0.08 -0.68 2.43 -90.62 -0.22 -0.90 16 19 C -0.11 -0.92 5.10 -26.73 -0.14 -1.06 16 20 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 21 C -0.12 -0.75 5.92 -26.74 -0.16 -0.90 16 22 C -0.12 -0.71 5.92 -26.71 -0.16 -0.87 16 23 C -0.11 -0.77 5.21 -26.71 -0.14 -0.90 16 24 C -0.22 -3.38 9.01 -39.50 -0.36 -3.73 16 25 C -0.03 -0.58 9.61 -39.20 -0.38 -0.95 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.14 2.41 7.64 -52.49 -0.40 2.01 16 28 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 30 H 0.06 0.61 7.64 -51.93 -0.40 0.21 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.13 1.62 6.27 -52.49 -0.33 1.29 16 43 H 0.14 2.82 7.60 -52.49 -0.40 2.42 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -32.70 356.39 -8.77 -41.47 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.48 Total: 0.45 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.73 Total: -12.98 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.76 Total: -24.29 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.68 Total: -26.31 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.70 -8.77 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064060310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.358 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds