Wall clock time and date at job start Tue Mar 31 2020 08:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99718 * 2 1 4 4 H 1.48501 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47169 * 299.99839 * 3 2 1 6 6 H 1.48499 * 109.47360 * 60.00242 * 3 2 1 7 7 C 1.38806 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00367 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.47436 * 126.06148 * 0.02562 * 9 7 2 11 11 C 1.56543 * 107.35679 * 178.29512 * 10 9 7 12 12 C 1.56030 * 101.68731 * 337.36853 * 11 10 9 13 13 H 1.08995 * 112.86570 * 157.36926 * 12 11 10 14 14 C 1.53099 * 106.39199 * 281.20536 * 12 11 10 15 15 C 1.52834 * 110.58010 * 164.55940 * 14 12 11 16 16 N 1.47147 * 107.98020 * 302.65539 * 15 14 12 17 17 C 1.34779 * 121.21640 * 237.29476 * 16 15 14 18 18 O 1.21282 * 119.99926 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00033 * 359.97438 * 17 16 15 20 20 C 1.50706 * 109.46817 * 180.02562 * 19 17 16 21 21 C 1.41377 * 126.57957 * 269.71146 * 20 19 17 22 22 C 1.34511 * 106.84100 * 179.83746 * 21 20 19 23 23 O 1.34306 * 108.42179 * 0.43020 * 22 21 20 24 24 C 1.34306 * 109.47108 * 359.72181 * 23 22 21 25 25 C 1.46762 * 117.56456 * 57.55965 * 16 15 14 26 26 C 1.46475 * 126.06183 * 179.97438 * 9 7 2 27 27 H 1.09003 * 108.42318 * 90.09903 * 26 9 7 28 28 H 0.96996 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.89974 * 297.75595 * 10 9 7 30 30 H 1.08998 * 109.89903 * 58.81774 * 10 9 7 31 31 H 1.09002 * 111.58123 * 219.24002 * 11 10 9 32 32 H 1.09001 * 110.85460 * 95.17872 * 11 10 9 33 33 H 1.08999 * 109.25594 * 44.26914 * 14 12 11 34 34 H 1.09001 * 109.22064 * 284.82471 * 14 12 11 35 35 H 1.09003 * 109.75354 * 183.03251 * 15 14 12 36 36 H 1.08995 * 109.75996 * 62.27523 * 15 14 12 37 37 H 1.09000 * 109.46670 * 60.00406 * 19 17 16 38 38 H 1.09000 * 109.47247 * 300.00119 * 19 17 16 39 39 H 1.08005 * 126.58292 * 0.02562 * 21 20 19 40 40 H 1.07999 * 125.79269 * 180.11184 * 22 21 20 41 41 H 1.07997 * 125.78526 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.22588 * 67.51969 * 25 16 15 43 43 H 1.09003 * 109.22966 * 186.87599 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1405 -2.5437 0.0017 11 6 -0.4471 -4.0782 -0.0413 12 6 0.8721 -4.6472 -0.6500 13 1 1.0296 -5.6989 -0.4112 14 6 0.7966 -4.3939 -2.1580 15 6 2.1738 -4.5580 -2.8000 16 7 3.0991 -3.6274 -2.1344 17 6 3.7799 -2.6988 -2.8348 18 8 4.5366 -1.9425 -2.2636 19 6 3.6009 -2.6002 -4.3279 20 6 4.4679 -1.4909 -4.8656 21 6 4.1008 -0.1345 -5.0208 22 6 5.1712 0.5034 -5.5273 23 8 6.1585 -0.3915 -5.6950 24 6 5.7376 -1.6026 -5.2953 25 6 3.2579 -3.7513 -0.6806 26 6 1.9200 -3.7267 0.0017 27 1 2.0590 -4.0418 1.0359 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5598 -2.1075 0.9083 30 1 -0.5654 -2.0560 -0.8755 31 1 -1.2975 -4.2992 -0.6865 32 1 -0.6101 -4.4697 0.9628 33 1 0.4360 -3.3805 -2.3347 34 1 0.1035 -5.1053 -2.6071 35 1 2.1153 -4.3226 -3.8627 36 1 2.5225 -5.5821 -2.6674 37 1 2.5562 -2.3880 -4.5553 38 1 3.8893 -3.5435 -4.7915 39 1 3.1452 0.3057 -4.7766 40 1 5.2257 1.5557 -5.7642 41 1 6.3197 -2.5120 -5.3159 42 1 3.7529 -4.6953 -0.4529 43 1 3.8715 -2.9278 -0.3151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042024964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:04 Heat of formation + Delta-G solvation = 16.872314 kcal Electronic energy + Delta-G solvation = -26400.635814 eV Core-core repulsion = 22834.559440 eV Total energy + Delta-G solvation = -3566.076374 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33673 -39.88104 -37.97889 -34.87897 -33.78157 -32.79271 -31.26696 -30.30874 -29.15656 -28.34057 -27.34072 -24.60187 -23.68096 -22.49880 -21.39549 -20.76070 -20.01251 -19.37556 -18.17311 -17.19876 -16.75258 -16.47850 -15.63736 -15.29046 -14.87261 -14.86122 -14.44637 -14.21479 -13.90606 -13.51920 -13.33233 -12.76055 -12.74516 -12.56132 -12.40298 -12.24940 -11.96939 -11.54815 -11.41045 -11.22748 -11.20367 -10.87629 -10.74000 -10.68971 -10.06570 -9.81573 -9.79778 -9.63667 -9.58606 -9.45663 -9.08355 -8.50870 -8.32482 -8.03814 -6.73139 -5.61217 -2.92688 1.96526 2.76805 3.22687 3.31808 3.48178 3.54715 3.62696 3.63472 4.61320 4.91659 4.93486 5.00121 5.11492 5.17390 5.24754 5.36553 5.52919 5.53450 5.56653 5.69763 5.73005 5.74697 5.80855 5.91631 6.01328 6.09349 6.14342 6.22374 6.31282 6.31911 6.34701 6.44984 6.50948 6.63610 6.68888 6.80283 6.95821 7.15807 7.29529 7.64740 7.67582 7.94656 7.99468 8.33381 8.80540 9.33065 9.93526 10.57830 11.51202 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.006636 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.275709 B = 4218.082803 C = 5791.263725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.208 4.208 8 H 0.083 0.917 9 N -0.589 5.589 10 C 0.179 3.821 11 C -0.146 4.146 12 C -0.100 4.100 13 H 0.073 0.927 14 C -0.124 4.124 15 C 0.111 3.889 16 N -0.597 5.597 17 C 0.521 3.479 18 O -0.527 6.527 19 C -0.069 4.069 20 C -0.153 4.153 21 C -0.192 4.192 22 C -0.050 4.050 23 O -0.181 6.181 24 C -0.037 4.037 25 C 0.115 3.885 26 C 0.153 3.847 27 H 0.025 0.975 28 H 0.248 0.752 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.200 0.800 41 H 0.197 0.803 42 H 0.050 0.950 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 -10.267 -10.598 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.336 4.336 8 H 0.101 0.899 9 N -0.314 5.314 10 C 0.055 3.945 11 C -0.184 4.184 12 C -0.120 4.120 13 H 0.092 0.908 14 C -0.162 4.162 15 C -0.012 4.012 16 N -0.331 5.331 17 C 0.309 3.691 18 O -0.402 6.402 19 C -0.109 4.109 20 C -0.155 4.155 21 C -0.211 4.211 22 C -0.117 4.117 23 O -0.076 6.076 24 C -0.104 4.104 25 C -0.008 4.008 26 C 0.044 3.956 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.165 0.835 40 H 0.216 0.784 41 H 0.214 0.786 42 H 0.068 0.932 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.067 -9.526 -10.393 14.981 hybrid contribution -0.090 0.904 0.212 0.933 sum 4.978 -8.622 -10.180 14.239 Atomic orbital electron populations 1.69963 1.04753 1.24551 1.58309 1.24682 0.95561 0.97397 1.02823 0.86125 0.79398 0.84148 0.76888 1.20202 1.22052 1.22110 1.19103 0.90648 0.81938 1.41931 0.89949 1.44301 1.01384 0.99298 1.86442 1.21565 0.84362 0.87859 1.00736 1.23500 0.95886 0.99859 0.99156 1.22324 0.97110 0.97678 0.94849 0.90844 1.21841 0.95691 1.03237 0.95403 1.21639 0.90168 0.92800 0.96636 1.47810 1.43292 1.34099 1.07895 1.20233 0.80346 0.79747 0.88799 1.90698 1.37569 1.40731 1.71217 1.20011 1.00778 0.97064 0.93035 1.19838 0.95508 0.95216 1.04920 1.21756 1.00983 0.93704 1.04655 1.23892 0.86644 0.95137 1.06034 1.84018 1.39731 1.17314 1.66585 1.23662 0.95316 0.87445 1.04011 1.21183 0.98735 1.01341 0.79519 1.20518 0.91334 0.87882 0.95838 0.95808 0.94170 0.94210 0.93706 0.92203 0.92769 0.90136 0.92125 0.90514 0.91922 0.88161 0.88824 0.83520 0.78372 0.78609 0.93200 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 10.38 55.49 0.58 -27.08 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.90 23.76 29.55 -169.99 -5.02 18.73 16 4 H -0.28 -7.39 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 7 C -0.21 -5.86 9.65 -15.06 -0.15 -6.01 16 8 H 0.08 2.41 6.42 -52.48 -0.34 2.08 16 9 N -0.59 -14.56 3.20 -163.73 -0.52 -15.09 16 10 C 0.18 4.26 4.67 -1.62 -0.01 4.26 16 11 C -0.15 -2.60 6.48 -23.20 -0.15 -2.75 16 12 C -0.10 -1.62 3.65 -88.45 -0.32 -1.94 16 13 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.12 -1.83 5.04 -26.77 -0.13 -1.97 16 15 C 0.11 1.45 6.35 -3.77 -0.02 1.43 16 16 N -0.60 -10.28 2.96 -174.71 -0.52 -10.80 16 17 C 0.52 9.76 7.71 -10.99 -0.08 9.67 16 18 O -0.53 -12.27 15.49 5.56 0.09 -12.18 16 19 C -0.07 -0.99 4.58 -29.03 -0.13 -1.12 16 20 C -0.15 -2.39 4.66 -104.74 -0.49 -2.87 16 21 C -0.19 -3.08 10.87 -39.71 -0.43 -3.51 16 22 C -0.05 -0.70 12.09 29.41 0.36 -0.34 16 23 O -0.18 -2.63 10.65 5.69 0.06 -2.57 16 24 C -0.04 -0.51 12.01 29.41 0.35 -0.16 16 25 C 0.12 2.17 5.60 -5.29 -0.03 2.14 16 26 C 0.15 3.03 2.96 -68.84 -0.20 2.83 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.04 1.07 7.57 -51.93 -0.39 0.67 16 30 H 0.04 1.18 7.03 -51.93 -0.37 0.82 16 31 H 0.06 0.96 7.97 -51.93 -0.41 0.55 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.51 6.85 -51.93 -0.36 1.15 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.83 6.02 -51.93 -0.31 0.52 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.39 7.79 -51.93 -0.40 0.98 16 38 H 0.09 1.00 7.91 -51.93 -0.41 0.59 16 39 H 0.15 2.37 8.06 -52.48 -0.42 1.95 16 40 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 2.14 5.41 -51.93 -0.28 1.86 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -34.82 339.66 -7.98 -42.80 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.21 Total: 1.78 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.54 Total: -0.72 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.47 Total: -52.96 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.15 Total: -14.75 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.82 -7.98 -42.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042024964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.673 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds