Wall clock time and date at job start Tue Mar 31 2020 08:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99718 * 2 1 4 4 H 1.48501 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47169 * 299.99839 * 3 2 1 6 6 H 1.48499 * 109.47360 * 60.00242 * 3 2 1 7 7 C 1.38806 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00367 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.47436 * 126.06148 * 0.02562 * 9 7 2 11 11 C 1.56543 * 107.35679 * 178.29512 * 10 9 7 12 12 C 1.56030 * 101.68731 * 337.36853 * 11 10 9 13 13 H 1.08995 * 112.86570 * 157.36926 * 12 11 10 14 14 C 1.53099 * 106.39199 * 281.20536 * 12 11 10 15 15 C 1.52834 * 110.58010 * 164.55940 * 14 12 11 16 16 N 1.47147 * 107.98020 * 302.65539 * 15 14 12 17 17 C 1.34779 * 121.21640 * 237.29476 * 16 15 14 18 18 O 1.21282 * 119.99926 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00033 * 359.97438 * 17 16 15 20 20 C 1.50706 * 109.46817 * 180.02562 * 19 17 16 21 21 C 1.41377 * 126.57957 * 269.71146 * 20 19 17 22 22 C 1.34511 * 106.84100 * 179.83746 * 21 20 19 23 23 O 1.34306 * 108.42179 * 0.43020 * 22 21 20 24 24 C 1.34306 * 109.47108 * 359.72181 * 23 22 21 25 25 C 1.46762 * 117.56456 * 57.55965 * 16 15 14 26 26 C 1.46475 * 126.06183 * 179.97438 * 9 7 2 27 27 H 1.09003 * 108.42318 * 90.09903 * 26 9 7 28 28 H 0.96996 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.89974 * 297.75595 * 10 9 7 30 30 H 1.08998 * 109.89903 * 58.81774 * 10 9 7 31 31 H 1.09002 * 111.58123 * 219.24002 * 11 10 9 32 32 H 1.09001 * 110.85460 * 95.17872 * 11 10 9 33 33 H 1.08999 * 109.25594 * 44.26914 * 14 12 11 34 34 H 1.09001 * 109.22064 * 284.82471 * 14 12 11 35 35 H 1.09003 * 109.75354 * 183.03251 * 15 14 12 36 36 H 1.08995 * 109.75996 * 62.27523 * 15 14 12 37 37 H 1.09000 * 109.46670 * 60.00406 * 19 17 16 38 38 H 1.09000 * 109.47247 * 300.00119 * 19 17 16 39 39 H 1.08005 * 126.58292 * 0.02562 * 21 20 19 40 40 H 1.07999 * 125.79269 * 180.11184 * 22 21 20 41 41 H 1.07997 * 125.78526 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.22588 * 67.51969 * 25 16 15 43 43 H 1.09003 * 109.22966 * 186.87599 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1405 -2.5437 0.0017 11 6 -0.4471 -4.0782 -0.0413 12 6 0.8721 -4.6472 -0.6500 13 1 1.0296 -5.6989 -0.4112 14 6 0.7966 -4.3939 -2.1580 15 6 2.1738 -4.5580 -2.8000 16 7 3.0991 -3.6274 -2.1344 17 6 3.7799 -2.6988 -2.8348 18 8 4.5366 -1.9425 -2.2636 19 6 3.6009 -2.6002 -4.3279 20 6 4.4679 -1.4909 -4.8656 21 6 4.1008 -0.1345 -5.0208 22 6 5.1712 0.5034 -5.5273 23 8 6.1585 -0.3915 -5.6950 24 6 5.7376 -1.6026 -5.2953 25 6 3.2579 -3.7513 -0.6806 26 6 1.9200 -3.7267 0.0017 27 1 2.0590 -4.0418 1.0359 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5598 -2.1075 0.9083 30 1 -0.5654 -2.0560 -0.8755 31 1 -1.2975 -4.2992 -0.6865 32 1 -0.6101 -4.4697 0.9628 33 1 0.4360 -3.3805 -2.3347 34 1 0.1035 -5.1053 -2.6071 35 1 2.1153 -4.3226 -3.8627 36 1 2.5225 -5.5821 -2.6674 37 1 2.5562 -2.3880 -4.5553 38 1 3.8893 -3.5435 -4.7915 39 1 3.1452 0.3057 -4.7766 40 1 5.2257 1.5557 -5.7642 41 1 6.3197 -2.5120 -5.3159 42 1 3.7529 -4.6953 -0.4529 43 1 3.8715 -2.9278 -0.3151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042024964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:03 Heat of formation + Delta-G solvation = -6.399671 kcal Electronic energy + Delta-G solvation = -26401.644963 eV Core-core repulsion = 22834.559440 eV Total energy + Delta-G solvation = -3567.085523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.44107 -41.30195 -39.50927 -36.44343 -34.95171 -34.63270 -32.89268 -31.61995 -30.59135 -29.99707 -28.57477 -26.51096 -25.22388 -23.82732 -22.52510 -21.99881 -21.78902 -20.70209 -19.61092 -18.45372 -18.30440 -18.06696 -16.98494 -16.77878 -16.44706 -16.23647 -16.00829 -15.57470 -15.51722 -15.08475 -14.64342 -14.23245 -14.05164 -13.94595 -13.72964 -13.61249 -13.44480 -13.16393 -13.02356 -12.90972 -12.66249 -12.52397 -12.41010 -12.26890 -12.05216 -11.66796 -11.37275 -11.23574 -11.10743 -10.89303 -10.69267 -10.42469 -9.42118 -9.41063 -8.80077 -7.85275 -5.14320 0.87868 1.31592 1.33380 1.46126 1.57375 1.85172 2.27953 2.39020 2.45843 3.33379 3.55454 3.77598 3.89485 3.93636 3.96325 3.99310 4.11993 4.15298 4.36511 4.50316 4.51748 4.54220 4.60875 4.65299 4.70025 4.75728 4.79782 4.91279 4.95475 5.06335 5.11348 5.16342 5.18903 5.29251 5.36436 5.53512 5.55312 5.68321 5.73206 5.78655 5.82779 6.18282 6.23092 6.67763 7.15099 7.43270 7.83188 8.45955 9.25466 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.006636 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.275709 B = 4218.082803 C = 5791.263725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.952 3.048 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.195 4.195 8 H 0.065 0.935 9 N -0.605 5.605 10 C 0.185 3.815 11 C -0.130 4.130 12 C -0.083 4.083 13 H 0.122 0.878 14 C -0.121 4.121 15 C 0.107 3.893 16 N -0.599 5.599 17 C 0.509 3.491 18 O -0.587 6.587 19 C -0.058 4.058 20 C -0.181 4.181 21 C -0.232 4.232 22 C -0.044 4.044 23 O -0.186 6.186 24 C -0.031 4.031 25 C 0.119 3.881 26 C 0.141 3.859 27 H 0.022 0.978 28 H 0.242 0.758 29 H -0.005 1.005 30 H 0.008 0.992 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.231 0.769 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -13.874 -12.317 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.257 4.257 3 Si 0.783 3.217 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.325 4.325 8 H 0.083 0.917 9 N -0.330 5.330 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.103 4.103 13 H 0.140 0.860 14 C -0.159 4.159 15 C -0.014 4.014 16 N -0.331 5.331 17 C 0.298 3.702 18 O -0.467 6.467 19 C -0.097 4.097 20 C -0.183 4.183 21 C -0.252 4.252 22 C -0.110 4.110 23 O -0.081 6.081 24 C -0.098 4.098 25 C -0.005 4.005 26 C 0.034 3.966 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.013 0.987 30 H 0.026 0.974 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.248 0.752 41 H 0.249 0.751 42 H 0.107 0.893 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.523 -13.195 -12.122 18.750 hybrid contribution -0.206 1.985 0.800 2.150 sum 5.317 -11.210 -11.322 16.797 Atomic orbital electron populations 1.70139 1.05430 1.24336 1.60102 1.25250 0.96313 0.99737 1.04376 0.85368 0.77752 0.81766 0.76825 1.21185 1.22071 1.21597 1.19087 0.90048 0.83699 1.39683 0.91744 1.44469 1.02171 1.00382 1.85955 1.21333 0.83553 0.92255 0.96856 1.23364 0.97971 0.94590 1.00859 1.22381 0.93620 0.98925 0.95340 0.86039 1.21826 0.97719 1.01613 0.94789 1.22022 0.88043 0.93812 0.97555 1.48003 1.43471 1.34375 1.07266 1.21080 0.79554 0.78936 0.90603 1.90666 1.40337 1.42989 1.72682 1.20027 1.00815 0.98992 0.89887 1.20132 0.96769 0.95333 1.06073 1.21934 1.01411 0.95023 1.06797 1.24458 0.85746 0.96320 1.04520 1.84036 1.39813 1.17773 1.66517 1.24324 0.94959 0.88132 1.02388 1.21004 0.97396 1.01342 0.80798 1.20856 0.93113 0.86162 0.96465 0.96066 0.94875 0.98659 0.97374 0.89706 0.91542 0.94927 0.87889 0.87895 0.87732 0.87976 0.84151 0.85008 0.75243 0.75089 0.89278 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 10.38 21.65 0.22 -59.37 16 2 C -0.06 -3.94 5.49 84.86 0.47 -3.47 16 3 Si 0.95 51.37 29.55 68.60 2.03 53.39 16 4 H -0.29 -15.69 7.11 99.48 0.71 -14.99 16 5 H -0.29 -15.67 7.11 99.48 0.71 -14.97 16 6 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 7 C -0.20 -11.55 9.65 84.03 0.81 -10.74 16 8 H 0.06 4.01 6.42 -2.91 -0.02 3.99 16 9 N -0.60 -30.77 3.20 -671.93 -2.15 -32.92 16 10 C 0.19 9.06 4.67 87.44 0.41 9.46 16 11 C -0.13 -4.31 6.48 32.88 0.21 -4.10 16 12 C -0.08 -2.36 3.65 -9.39 -0.03 -2.39 16 13 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 14 C -0.12 -3.10 5.04 30.57 0.15 -2.95 16 15 C 0.11 2.28 6.35 86.20 0.55 2.83 16 16 N -0.60 -19.40 2.96 -825.05 -2.45 -21.85 16 17 C 0.51 18.76 7.71 87.66 0.68 19.43 16 18 O -0.59 -28.22 15.49 -3.04 -0.05 -28.26 16 19 C -0.06 -1.55 4.58 29.10 0.13 -1.42 16 20 C -0.18 -5.52 4.66 -19.94 -0.09 -5.62 16 21 C -0.23 -7.63 10.87 22.19 0.24 -7.39 16 22 C -0.04 -1.20 12.09 66.97 0.81 -0.39 16 23 O -0.19 -5.17 10.65 -2.54 -0.03 -5.19 16 24 C -0.03 -0.80 12.01 66.97 0.80 0.00 16 25 C 0.12 4.31 5.60 85.43 0.48 4.79 16 26 C 0.14 5.42 2.96 44.42 0.13 5.55 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.00 -0.28 7.57 -2.39 -0.02 -0.29 16 30 H 0.01 0.45 7.03 -2.39 -0.02 0.43 16 31 H 0.08 2.43 7.97 -2.39 -0.02 2.41 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.03 1.16 6.85 -2.39 -0.02 1.15 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.10 1.70 6.02 -2.39 -0.01 1.68 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 2.69 7.79 -2.39 -0.02 2.67 16 38 H 0.14 2.37 7.91 -2.39 -0.02 2.35 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.23 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.23 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.05 2.23 5.41 -2.39 -0.01 2.22 16 Total: -1.00 -84.61 339.66 4.34 -80.27 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.01 Total: 10.33 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.75 Total: 3.60 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.37 Total: -114.13 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.07 Total: -33.46 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.03 Total: 53.39 kcal Total: -84.61 4.34 -80.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042024964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.868 kcal (2) G-P(sol) polarization free energy of solvation -84.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds