Wall clock time and date at job start Tue Mar 31 2020 08:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48501 * 109.46908 * 240.00367 * 3 2 1 5 5 H 1.48501 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47517 * 120.00391 * 3 2 1 7 7 C 1.38809 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00412 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99506 * 359.97438 * 7 2 1 10 10 C 1.48150 * 126.39905 * 359.97438 * 9 7 2 11 11 C 1.55303 * 107.04431 * 175.01634 * 10 9 7 12 12 C 1.53708 * 101.81124 * 337.55409 * 11 10 9 13 13 H 1.09001 * 111.10864 * 281.40087 * 12 11 10 14 14 C 1.51973 * 115.00031 * 153.46464 * 12 11 10 15 15 C 1.53894 * 107.28749 * 184.55841 * 14 12 11 16 16 N 1.46596 * 110.71065 * 51.80820 * 15 14 12 17 17 C 1.34776 * 119.74962 * 132.27906 * 16 15 14 18 18 O 1.21277 * 119.99607 * 180.02562 * 17 16 15 19 19 C 1.50698 * 120.00321 * 0.02562 * 17 16 15 20 20 C 1.50698 * 109.47399 * 180.02562 * 19 17 16 21 21 C 1.41381 * 126.58267 * 89.99504 * 20 19 17 22 22 C 1.34514 * 106.84307 * 179.97438 * 21 20 19 23 23 O 1.34300 * 108.41768 * 0.02562 * 22 21 20 24 24 C 1.34307 * 109.47956 * 359.77208 * 23 22 21 25 25 C 1.47796 * 120.49620 * 312.25741 * 16 15 14 26 26 C 1.45506 * 126.39491 * 179.97438 * 9 7 2 27 27 H 1.09005 * 108.98393 * 93.62156 * 26 9 7 28 28 H 0.97004 * 120.00250 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.92110 * 55.67259 * 10 9 7 30 30 H 1.08992 * 110.08956 * 294.46086 * 10 9 7 31 31 H 1.09001 * 110.96232 * 219.42465 * 11 10 9 32 32 H 1.08993 * 110.96037 * 95.68362 * 11 10 9 33 33 H 1.08998 * 109.89698 * 65.11190 * 14 12 11 34 34 H 1.09004 * 109.89666 * 303.99386 * 14 12 11 35 35 H 1.09002 * 109.22570 * 291.49161 * 15 14 12 36 36 H 1.09003 * 109.22657 * 172.13134 * 15 14 12 37 37 H 1.09006 * 109.46971 * 299.99767 * 19 17 16 38 38 H 1.08998 * 109.47286 * 59.99331 * 19 17 16 39 39 H 1.08003 * 126.57946 * 0.02562 * 21 20 19 40 40 H 1.07997 * 125.79068 * 180.02562 * 22 21 20 41 41 H 1.08001 * 125.79272 * 180.24380 * 24 23 22 42 42 H 1.09000 * 110.06157 * 170.47454 * 25 16 15 43 43 H 1.09003 * 110.06426 * 291.93292 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5532 0.0005 11 6 -0.4343 -4.0738 -0.1289 12 6 0.8679 -4.5874 -0.7640 13 1 0.8905 -4.3817 -1.8342 14 6 1.1973 -6.0410 -0.4674 15 6 2.5769 -6.3322 -1.0841 16 7 3.5600 -5.3355 -0.6494 17 6 4.7636 -5.7372 -0.1949 18 8 5.5801 -4.9164 0.1663 19 6 5.0948 -7.2061 -0.1357 20 6 6.4898 -7.3852 0.4056 21 6 6.8538 -7.5364 1.7633 22 6 8.1922 -7.6670 1.7958 23 8 8.6554 -7.6026 0.5369 24 6 7.6271 -7.4364 -0.3108 25 6 3.2414 -3.8934 -0.7061 26 6 1.9083 -3.7214 -0.0016 27 1 1.9914 -4.0728 1.0269 28 1 -0.4851 0.8401 0.0004 29 1 -0.5808 -2.0199 -0.8452 30 1 -0.5652 -2.1741 0.9328 31 1 -1.2859 -4.2552 -0.7847 32 1 -0.5949 -4.5250 0.8502 33 1 0.4459 -6.6907 -0.9161 34 1 1.2317 -6.2012 0.6102 35 1 2.4968 -6.3072 -2.1709 36 1 2.9077 -7.3228 -0.7720 37 1 4.3842 -7.7127 0.5175 38 1 5.0356 -7.6326 -1.1370 39 1 6.1854 -7.5462 2.6116 40 1 8.7923 -7.8008 2.6836 41 1 7.7009 -7.3557 -1.3853 42 1 4.0128 -3.3195 -0.1926 43 1 3.1623 -3.5684 -1.7436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042024965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:07 Heat of formation + Delta-G solvation = -7.977311 kcal Electronic energy + Delta-G solvation = -25285.610933 eV Core-core repulsion = 21718.456999 eV Total energy + Delta-G solvation = -3567.153934 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.41333 -41.40292 -39.67754 -36.81979 -34.96230 -34.65411 -32.87745 -31.77143 -30.71508 -30.16340 -28.48922 -26.53775 -25.14821 -23.50924 -22.47873 -21.92280 -21.80202 -21.05336 -19.94467 -18.70816 -18.31633 -17.97762 -16.93268 -16.75865 -16.56763 -16.46329 -15.84525 -15.68204 -15.47058 -15.14373 -14.77598 -14.32070 -14.22740 -13.79941 -13.71119 -13.63042 -13.59127 -13.28431 -13.11682 -13.00874 -12.74025 -12.52150 -12.40191 -12.12532 -11.99787 -11.77093 -11.53171 -11.33212 -11.01822 -10.99644 -10.74581 -10.47108 -9.64023 -9.39457 -8.92459 -7.88670 -5.23550 0.90694 1.41194 1.43914 1.50333 1.57996 1.67933 2.13850 2.35556 2.47774 3.29337 3.48537 3.70356 3.81728 3.92499 3.97201 3.99386 4.04504 4.17320 4.30325 4.32427 4.37169 4.56339 4.58874 4.61098 4.64830 4.76843 4.80738 4.87070 4.94842 4.96364 5.13283 5.14128 5.17747 5.26521 5.33402 5.38539 5.52146 5.61155 5.63556 5.65622 5.77259 6.17464 6.22911 6.49616 7.06214 7.23635 7.74846 8.41632 9.22007 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.003808 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.717157 B = 7351.845500 C = 8611.504236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.096 4.096 13 H 0.075 0.925 14 C -0.111 4.111 15 C 0.101 3.899 16 N -0.606 5.606 17 C 0.503 3.497 18 O -0.591 6.591 19 C -0.057 4.057 20 C -0.183 4.183 21 C -0.224 4.224 22 C -0.048 4.048 23 O -0.192 6.192 24 C -0.039 4.039 25 C 0.129 3.871 26 C 0.148 3.852 27 H 0.005 0.995 28 H 0.248 0.752 29 H 0.022 0.978 30 H -0.002 1.002 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.232 0.768 41 H 0.223 0.777 42 H 0.049 0.951 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.259 -23.302 -2.444 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.341 5.341 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.094 0.906 14 C -0.150 4.150 15 C -0.020 4.020 16 N -0.340 5.340 17 C 0.293 3.707 18 O -0.472 6.472 19 C -0.096 4.096 20 C -0.184 4.184 21 C -0.243 4.243 22 C -0.115 4.115 23 O -0.088 6.088 24 C -0.107 4.107 25 C 0.005 3.995 26 C 0.040 3.960 27 H 0.022 0.978 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.016 0.984 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.248 0.752 41 H 0.239 0.761 42 H 0.068 0.932 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.923 -22.670 -2.344 24.129 hybrid contribution 0.031 2.047 0.470 2.100 sum 7.953 -20.623 -1.874 22.183 Atomic orbital electron populations 1.70139 1.06040 1.25350 1.58127 1.25542 0.96567 1.00656 1.02593 0.85268 0.77317 0.79386 0.78103 1.20300 1.21415 1.20929 1.19257 0.90510 0.83940 1.43171 0.91014 1.44470 1.02636 1.00438 1.86548 1.21356 0.82851 0.92722 0.97524 1.22607 0.97823 0.94678 1.00920 1.22208 0.94336 0.95846 0.99156 0.90620 1.21819 0.97154 0.94216 1.01774 1.22149 0.87689 0.91768 1.00430 1.48394 1.15235 1.06426 1.63912 1.21510 0.80827 0.92624 0.75724 1.90693 1.49570 1.56961 1.49929 1.20115 0.93477 0.90369 1.05637 1.20155 0.96008 1.08243 0.94034 1.21991 0.96505 1.08211 0.97599 1.24591 0.94987 1.05675 0.86229 1.84047 1.36725 1.70799 1.17191 1.24323 0.84223 1.05151 0.96981 1.21209 0.96810 0.81579 0.99862 1.21142 0.93317 0.86117 0.95411 0.97759 0.94297 0.95979 0.98413 0.89485 0.91209 0.86686 0.91541 0.89666 0.85791 0.85396 0.84442 0.83020 0.75216 0.76062 0.93189 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.24 10.44 21.65 0.23 -58.01 16 2 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 3 Si 0.97 47.88 29.55 68.60 2.03 49.91 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.24 -14.07 9.88 84.03 0.83 -13.24 16 8 H 0.07 4.18 7.41 -2.91 -0.02 4.16 16 9 N -0.62 -32.58 3.35 -669.39 -2.24 -34.82 16 10 C 0.18 8.96 5.45 86.85 0.47 9.43 16 11 C -0.12 -4.21 6.54 31.62 0.21 -4.00 16 12 C -0.10 -2.98 2.61 -10.08 -0.03 -3.00 16 13 H 0.08 2.42 8.13 -2.39 -0.02 2.40 16 14 C -0.11 -2.18 5.72 30.56 0.17 -2.01 16 15 C 0.10 1.72 6.22 86.66 0.54 2.26 16 16 N -0.61 -17.15 3.01 -818.84 -2.46 -19.61 16 17 C 0.50 14.79 7.67 87.66 0.67 15.46 16 18 O -0.59 -24.23 15.40 -3.02 -0.05 -24.27 16 19 C -0.06 -1.00 4.55 29.10 0.13 -0.87 16 20 C -0.18 -4.03 4.66 -19.94 -0.09 -4.12 16 21 C -0.22 -4.93 10.87 22.19 0.24 -4.69 16 22 C -0.05 -0.94 12.09 66.97 0.81 -0.13 16 23 O -0.19 -4.30 10.65 -2.49 -0.03 -4.33 16 24 C -0.04 -0.82 12.01 66.97 0.80 -0.02 16 25 C 0.13 5.07 5.69 85.72 0.49 5.56 16 26 C 0.15 6.18 2.75 45.58 0.13 6.30 16 27 H 0.00 0.22 7.94 -2.38 -0.02 0.20 16 28 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.02 1.22 7.21 -2.39 -0.02 1.20 16 30 H 0.00 -0.14 7.77 -2.39 -0.02 -0.15 16 31 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.38 7.99 -2.38 -0.02 1.36 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.12 1.10 5.85 -2.39 -0.01 1.08 16 37 H 0.13 1.61 7.55 -2.38 -0.02 1.59 16 38 H 0.14 1.38 7.99 -2.39 -0.02 1.36 16 39 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.23 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.22 3.13 8.06 -2.91 -0.02 3.10 16 42 H 0.05 2.34 6.76 -2.39 -0.02 2.32 16 43 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -82.49 343.69 4.32 -78.17 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.00 Total: 9.14 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 5.84 Total: 3.83 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -4.48 Total: -112.45 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.07 Total: -28.60 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -82.49 4.32 -78.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042024965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.193 kcal (2) G-P(sol) polarization free energy of solvation -82.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds