Wall clock time and date at job start Tue Mar 31 2020 10:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34768 * 117.00113 * 2 1 4 4 O 1.21524 * 119.99647 * 359.97438 * 3 2 1 5 5 C 1.47284 * 119.99854 * 180.02562 * 3 2 1 6 6 C 1.40035 * 120.61833 * 5.32317 * 5 3 2 7 7 C 1.38312 * 118.36462 * 179.97438 * 6 5 3 8 8 C 1.38391 * 119.51263 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.38266 * 180.02562 * 8 7 6 10 10 N 1.31847 * 121.23397 * 359.72288 * 8 7 6 11 11 C 1.32428 * 121.78080 * 0.57083 * 10 8 7 12 12 N 1.38220 * 119.83187 * 179.70916 * 11 10 8 13 13 C 1.46854 * 111.00070 * 294.85733 * 12 11 10 14 14 C 1.53034 * 109.51534 * 185.84665 * 13 12 11 15 15 C 1.53114 * 109.27662 * 300.80320 * 14 13 12 16 16 C 1.53121 * 109.15408 * 57.67182 * 15 14 13 17 17 H 1.09006 * 109.50290 * 62.28035 * 16 15 14 18 18 C 1.50698 * 109.50489 * 182.39547 * 16 15 14 19 19 H 1.07997 * 119.99969 * 119.79891 * 18 16 15 20 20 C 1.37877 * 120.00304 * 299.80580 * 18 16 15 21 21 N 1.31512 * 120.00455 * 179.97438 * 20 18 16 22 22 Si 1.86801 * 119.99742 * 359.97438 * 20 18 16 23 23 H 1.48499 * 109.47355 * 90.00226 * 22 20 18 24 24 H 1.48506 * 109.46941 * 210.00049 * 22 20 18 25 25 H 1.48494 * 109.47370 * 330.00031 * 22 20 18 26 26 C 1.46843 * 111.00409 * 59.06605 * 12 11 10 27 27 H 1.09001 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47235 * 299.99893 * 1 2 3 29 29 H 1.09001 * 109.46864 * 60.00250 * 1 2 3 30 30 H 1.08003 * 120.81888 * 359.95682 * 6 5 3 31 31 H 1.08003 * 120.24019 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47367 * 89.99902 * 9 8 7 33 33 H 1.08995 * 109.47272 * 209.99840 * 9 8 7 34 34 H 1.09004 * 109.47095 * 330.00131 * 9 8 7 35 35 H 1.09006 * 109.45832 * 305.85578 * 13 12 11 36 36 H 1.08993 * 109.46250 * 65.82910 * 13 12 11 37 37 H 1.09004 * 109.50420 * 60.75851 * 14 13 12 38 38 H 1.08995 * 109.50224 * 180.86956 * 14 13 12 39 39 H 1.09001 * 109.53414 * 297.76200 * 15 14 13 40 40 H 1.09010 * 109.57122 * 177.60099 * 15 14 13 41 41 H 0.96992 * 120.00397 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.46302 * 294.17925 * 26 12 11 43 43 H 1.09000 * 109.46027 * 54.14365 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5347 1.2778 -0.0006 6 6 4.3096 0.1168 -0.1129 7 6 5.6869 0.2432 -0.1089 8 6 6.2559 1.4997 0.0042 9 6 7.7569 1.6341 0.0076 10 7 5.5093 2.5819 0.1030 11 6 4.1866 2.5184 0.1101 12 7 3.4431 3.6783 0.2216 13 6 3.6578 4.3177 1.5262 14 6 2.7135 5.5132 1.6712 15 6 2.9846 6.5113 0.5422 16 6 2.8012 5.8076 -0.8053 17 1 1.7695 5.4692 -0.9018 18 6 3.1234 6.7669 -1.9220 19 1 3.9201 6.5409 -2.6151 20 6 2.4010 7.9333 -2.0587 21 7 2.6824 8.7708 -3.0328 22 14 1.0225 8.3241 -0.8601 23 1 1.5682 9.0894 0.2895 24 1 -0.0153 9.1348 -1.5466 25 1 0.4186 7.0588 -0.3706 26 6 3.7427 4.6034 -0.8787 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8433 -0.8534 -0.2002 31 1 6.3137 -0.6322 -0.1943 32 1 8.1127 1.7614 -1.0148 33 1 8.0427 2.5016 0.6023 34 1 8.2011 0.7364 0.4377 35 1 3.4578 3.5984 2.3204 36 1 4.6903 4.6595 1.5975 37 1 1.6805 5.1701 1.6136 38 1 2.8838 5.9968 2.6330 39 1 4.0058 6.8840 0.6225 40 1 2.2858 7.3447 0.6159 41 1 2.1740 9.5912 -3.1292 42 1 4.7750 4.9439 -0.7961 43 1 3.6044 4.0917 -1.8311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:52 Heat of formation + Delta-G solvation = -29.355645 kcal Electronic energy + Delta-G solvation = -25806.460426 eV Core-core repulsion = 22238.379457 eV Total energy + Delta-G solvation = -3568.080968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98532 -39.64011 -38.13903 -36.14446 -34.21387 -33.23727 -32.31513 -30.57361 -30.25967 -28.68117 -27.20033 -24.92912 -24.55672 -23.06954 -22.07971 -21.23261 -20.85929 -18.82328 -17.88363 -17.08458 -17.03354 -16.28756 -16.22464 -15.85323 -14.89702 -14.83723 -14.43669 -14.08013 -13.85578 -13.68067 -13.30188 -13.16599 -12.91679 -12.88596 -12.59762 -12.43254 -12.33556 -12.12165 -12.06067 -11.92851 -11.12244 -10.98439 -10.67001 -10.50121 -10.29067 -10.12583 -9.98980 -9.88994 -9.70675 -9.62605 -9.09458 -8.95378 -8.76186 -8.44407 -8.00630 -6.00072 -3.98679 0.52613 1.10349 2.71343 2.72996 3.34722 3.45899 3.51957 3.67736 3.85557 4.29419 4.49975 4.56833 4.71987 4.94701 5.10314 5.13787 5.19802 5.26844 5.31990 5.38004 5.43852 5.49029 5.52620 5.56886 5.80902 5.81472 5.85250 5.92137 6.03078 6.21408 6.29174 6.33388 6.39907 6.46876 6.58727 6.67394 6.87582 6.90966 7.26124 7.32928 7.67870 7.75169 7.85324 7.90796 8.02279 8.59151 9.02976 9.62890 11.13184 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.005226 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.260610 B = 5357.011580 C = 6492.902054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.369 6.369 3 C 0.500 3.500 4 O -0.447 6.447 5 C -0.164 4.164 6 C -0.016 4.016 7 C -0.200 4.200 8 C 0.171 3.829 9 C -0.109 4.109 10 N -0.514 5.514 11 C 0.378 3.622 12 N -0.481 5.481 13 C 0.075 3.925 14 C -0.117 4.117 15 C -0.122 4.122 16 C 0.022 3.978 17 H 0.040 0.960 18 C -0.511 4.511 19 H 0.072 0.928 20 C 0.071 3.929 21 N -0.903 5.903 22 Si 0.886 3.114 23 H -0.280 1.280 24 H -0.299 1.299 25 H -0.261 1.261 26 C 0.090 3.910 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.263 0.737 42 H 0.043 0.957 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 -20.772 9.293 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.287 6.287 3 C 0.341 3.659 4 O -0.330 6.330 5 C -0.169 4.169 6 C -0.042 4.042 7 C -0.220 4.220 8 C 0.031 3.969 9 C -0.166 4.166 10 N -0.227 5.227 11 C 0.149 3.851 12 N -0.205 5.205 13 C -0.051 4.051 14 C -0.155 4.155 15 C -0.159 4.159 16 C 0.003 3.997 17 H 0.058 0.942 18 C -0.549 4.549 19 H 0.090 0.910 20 C -0.130 4.130 21 N -0.542 5.542 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.227 1.227 25 H -0.186 1.186 26 C -0.035 4.035 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.418 -19.558 9.240 21.899 hybrid contribution -0.539 -0.221 0.493 0.764 sum 2.879 -19.779 9.733 22.231 Atomic orbital electron populations 1.23189 0.76308 1.03151 1.02762 1.86502 1.23294 1.33425 1.85490 1.20657 0.88477 0.81682 0.75113 1.90997 1.65556 1.34959 1.41469 1.19844 0.90867 0.94173 1.12029 1.21835 0.93451 0.98173 0.90774 1.21860 0.95207 0.98721 1.06217 1.21469 0.96939 0.88325 0.90197 1.20825 0.88533 1.03593 1.03691 1.67998 1.06653 1.32708 1.15345 1.20071 0.86119 0.91507 0.87413 1.60145 1.50647 1.04693 1.04989 1.21954 0.98685 0.95871 0.88592 1.21643 0.99816 0.95366 0.98698 1.22022 1.00872 0.97109 0.95904 1.19164 0.96074 0.91657 0.92834 0.94231 1.20964 1.18788 1.03309 1.11867 0.90983 1.24949 0.96813 0.95960 0.95250 1.69896 1.41196 1.11352 1.31743 0.86852 0.82182 0.78660 0.80694 1.20683 1.22666 1.18612 1.22098 0.98966 0.92243 0.90236 0.88459 0.91990 0.91804 0.83369 0.84151 0.89809 0.90133 0.90470 0.92323 0.93778 0.91421 0.92473 0.92369 0.93417 0.92751 0.93848 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.57 101.05 1.07 1.47 16 2 O -0.37 -4.76 9.90 -40.68 -0.40 -5.17 16 3 C 0.50 8.05 7.88 34.41 0.27 8.32 16 4 O -0.45 -8.75 14.88 -19.28 -0.29 -9.03 16 5 C -0.16 -2.51 5.91 -104.66 -0.62 -3.13 16 6 C -0.02 -0.19 9.73 -38.88 -0.38 -0.56 16 7 C -0.20 -2.02 9.70 -39.50 -0.38 -2.41 16 8 C 0.17 2.10 6.78 -82.53 -0.56 1.55 16 9 C -0.11 -0.96 10.16 36.01 0.37 -0.60 16 10 N -0.51 -8.34 9.61 -8.43 -0.08 -8.42 16 11 C 0.38 6.62 5.29 -155.20 -0.82 5.80 16 12 N -0.48 -9.54 2.60 -173.00 -0.45 -9.99 16 13 C 0.08 1.37 5.29 -3.83 -0.02 1.35 16 14 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 15 C -0.12 -2.77 4.74 -26.61 -0.13 -2.90 16 16 C 0.02 0.55 1.85 -91.70 -0.17 0.38 16 17 H 0.04 1.07 7.19 -51.93 -0.37 0.69 16 18 C -0.51 -14.87 9.14 -34.44 -0.31 -15.19 16 19 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 21 N -0.90 -28.35 13.96 55.43 0.77 -27.57 16 22 Si 0.89 22.89 24.36 -169.99 -4.14 18.75 16 23 H -0.28 -6.99 6.89 56.52 0.39 -6.61 16 24 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 25 H -0.26 -6.62 6.53 56.52 0.37 -6.25 16 26 C 0.09 2.01 4.45 -3.84 -0.02 2.00 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.15 1.27 7.71 -52.48 -0.40 0.86 16 31 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.05 1.14 3.37 -51.92 -0.17 0.96 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.04 1.00 7.98 -51.93 -0.41 0.58 16 43 H 0.06 1.46 8.10 -51.93 -0.42 1.03 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -34.42 346.92 -7.77 -42.19 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.45 Total: -1.69 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.96 Total: -4.29 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.24 Total: -45.99 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.69 Total: -14.20 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.14 Total: 18.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.42 -7.77 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.838 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds