Wall clock time and date at job start Tue Mar 31 2020 08:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46877 * 2 1 4 4 C 1.53002 * 109.46753 * 240.00246 * 2 1 3 5 5 C 1.50694 * 109.47120 * 120.00326 * 2 1 3 6 6 O 1.21285 * 120.00357 * 359.97438 * 5 2 1 7 7 N 1.34776 * 119.99806 * 180.02562 * 5 2 1 8 8 C 1.46506 * 119.99888 * 180.02562 * 7 5 2 9 9 C 1.50701 * 109.46860 * 179.97438 * 8 7 5 10 10 O 1.21273 * 120.00122 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99729 * 179.97438 * 9 8 7 12 12 C 1.39230 * 120.00132 * 184.29391 * 11 9 8 13 13 C 1.39488 * 119.83491 * 324.71459 * 12 11 9 14 14 C 1.36369 * 120.16815 * 180.29701 * 13 12 11 15 15 C 1.40868 * 119.83187 * 359.48081 * 14 13 12 16 16 C 1.41157 * 120.16787 * 180.25497 * 15 14 13 17 17 H 1.07997 * 120.00057 * 215.01831 * 16 15 14 18 18 C 1.39907 * 119.99736 * 35.00954 * 16 15 14 19 19 N 1.30868 * 120.00224 * 355.54662 * 18 16 15 20 20 Si 1.86804 * 119.99669 * 175.55178 * 18 16 15 21 21 H 1.48497 * 109.47411 * 89.99814 * 20 18 16 22 22 H 1.48499 * 109.46679 * 210.00225 * 20 18 16 23 23 H 1.48503 * 109.46788 * 329.99782 * 20 18 16 24 24 C 1.40869 * 119.66984 * 0.51410 * 15 14 13 25 25 C 1.36371 * 119.83090 * 359.73785 * 24 15 14 26 26 H 1.09001 * 109.47533 * 299.99335 * 1 2 3 27 27 H 1.09002 * 109.47485 * 59.99698 * 1 2 3 28 28 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46693 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47489 * 300.00155 * 3 2 1 31 31 H 1.09002 * 109.46511 * 60.00586 * 3 2 1 32 32 H 1.08991 * 109.47531 * 299.99512 * 4 2 1 33 33 H 1.09000 * 109.47409 * 60.00499 * 4 2 1 34 34 H 1.09004 * 109.46426 * 179.97438 * 4 2 1 35 35 H 0.96996 * 120.00333 * 359.97438 * 7 5 2 36 36 H 1.09006 * 109.46989 * 59.99818 * 8 7 5 37 37 H 1.08996 * 109.46914 * 300.00009 * 8 7 5 38 38 H 0.97004 * 120.00223 * 4.29910 * 11 9 8 39 39 H 1.07997 * 119.90929 * 0.02562 * 13 12 11 40 40 H 1.08002 * 120.08447 * 179.70013 * 14 13 12 41 41 H 0.96996 * 120.00226 * 179.97438 * 19 18 16 42 42 H 1.08006 * 120.08685 * 179.71143 * 24 15 14 43 43 H 1.07996 * 119.92011 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2442 -1.1710 2.0290 7 7 3.3574 -0.8331 1.4439 8 6 3.8457 -1.5243 2.6398 9 6 5.3528 -1.5242 2.6397 10 8 5.9591 -0.9981 1.7307 11 7 6.0266 -2.1078 3.6505 12 6 7.4160 -2.0303 3.6972 13 6 8.1527 -2.0567 2.5130 14 6 9.5141 -1.9874 2.5512 15 6 10.1757 -1.8779 3.7900 16 6 11.5844 -1.8002 3.8374 17 1 12.1235 -2.2612 4.6517 18 6 12.2821 -1.1263 2.8292 19 7 11.6374 -0.6434 1.7977 20 14 14.1339 -0.9159 2.9554 21 1 14.8085 -2.0694 2.3077 22 1 14.5369 0.3401 2.2733 23 1 14.5284 -0.8510 4.3856 24 6 9.4249 -1.8518 4.9816 25 6 8.0644 -1.9272 4.9280 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9562 0.8901 32 1 1.6767 -1.7488 -1.2494 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7208 -1.2495 35 1 3.9877 -0.4645 0.8054 36 1 3.4828 -2.5522 2.6390 37 1 3.4820 -1.0112 3.5299 38 1 5.5437 -2.5818 4.3455 39 1 7.6437 -2.1366 1.5639 40 1 10.0834 -2.0128 1.6337 41 1 12.1211 -0.1758 1.0990 42 1 9.9256 -1.7728 5.9354 43 1 7.4874 -1.9078 5.8406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028436094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:09 Heat of formation + Delta-G solvation = -65.739122 kcal Electronic energy + Delta-G solvation = -24056.114815 eV Core-core repulsion = 20486.456141 eV Total energy + Delta-G solvation = -3569.658674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.49679 -39.56840 -37.39079 -35.82269 -34.77917 -34.30288 -32.98944 -29.70967 -29.38195 -28.02158 -27.61125 -27.15031 -24.84882 -22.89508 -21.52635 -21.00867 -20.02552 -19.38181 -17.48929 -17.33531 -16.76827 -16.16597 -15.88969 -15.72216 -15.18284 -14.85580 -14.45645 -14.05572 -14.01318 -13.78201 -13.25824 -13.13037 -12.73237 -12.61491 -12.58427 -12.35607 -12.18790 -12.11733 -11.95748 -11.76143 -11.53990 -11.21923 -11.20337 -11.17891 -10.97919 -10.55787 -10.03491 -9.94822 -9.85315 -9.60045 -9.24728 -9.08692 -8.84643 -7.58749 -6.96418 -6.64329 -4.38375 2.43100 2.51897 2.85954 2.93525 3.03852 3.07951 3.11272 3.26554 3.68499 3.95343 4.38774 4.51232 4.60838 4.66793 4.86312 5.01069 5.25772 5.28041 5.31665 5.34277 5.47352 5.55541 5.60697 5.61009 5.67306 5.84592 5.94976 6.03612 6.07911 6.20888 6.32355 6.68031 6.90670 6.98864 7.13684 7.23147 7.39766 7.56206 7.59526 7.88283 8.04144 8.04432 8.12185 8.27410 8.56369 8.63475 8.88536 8.94871 10.26584 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.002635 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.244563 B =10622.307727 C =11396.926226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.524 3.476 6 O -0.545 6.545 7 N -0.714 5.714 8 C 0.101 3.899 9 C 0.493 3.507 10 O -0.526 6.526 11 N -0.645 5.645 12 C -0.001 4.001 13 C -0.091 4.091 14 C -0.145 4.145 15 C 0.101 3.899 16 C -0.462 4.462 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.806 5.806 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.204 4.204 25 C -0.110 4.110 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.413 0.587 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.398 0.602 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.279 0.721 42 H 0.097 0.903 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 0.864 -3.645 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.201 4.201 4 C -0.200 4.200 5 C 0.311 3.689 6 O -0.422 6.422 7 N -0.369 5.369 8 C -0.027 4.027 9 C 0.278 3.722 10 O -0.403 6.403 11 N -0.288 5.288 12 C -0.093 4.093 13 C -0.111 4.111 14 C -0.165 4.165 15 C 0.099 3.901 16 C -0.492 4.492 17 H 0.094 0.906 18 C -0.147 4.147 19 N -0.433 5.433 20 Si 0.740 3.260 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.224 4.224 25 C -0.130 4.130 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.251 0.749 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.232 0.768 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.896 1.056 -3.935 16.410 hybrid contribution 0.934 0.181 0.214 0.975 sum -14.962 1.237 -3.721 15.467 Atomic orbital electron populations 1.21658 0.91882 1.02808 1.02033 1.20800 0.97985 0.96556 0.93467 1.21897 1.01734 0.93540 1.02896 1.21895 1.01712 1.00525 0.95910 1.20593 0.81641 0.79322 0.87389 1.90683 1.55425 1.48946 1.47159 1.45757 1.07588 1.58432 1.25097 1.21053 0.91830 0.99657 0.90171 1.20415 0.89107 0.79192 0.83455 1.90703 1.69223 1.45112 1.35284 1.42858 1.06603 1.53017 1.26297 1.17263 0.79931 1.17489 0.94602 1.20620 0.94411 1.00362 0.95745 1.21303 0.92291 1.03487 0.99459 1.17744 0.93549 0.88010 0.90820 1.19496 0.91657 1.30852 1.07219 0.90577 1.25904 1.00778 0.93988 0.94001 1.69780 1.37530 1.28395 1.07615 0.86194 0.81948 0.78365 0.79454 1.19488 1.20272 1.18735 1.20704 0.92469 1.11401 0.97850 1.20083 0.94944 1.03779 0.94224 0.91941 0.91992 0.91948 0.91709 0.91220 0.92008 0.92009 0.91228 0.91724 0.74858 0.88700 0.88599 0.76809 0.87493 0.85167 0.91028 0.88442 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 7.76 37.16 0.29 -0.82 16 2 C -0.08 -0.80 0.87 -155.66 -0.14 -0.93 16 3 C -0.14 -1.18 8.37 37.16 0.31 -0.87 16 4 C -0.14 -1.16 8.37 37.16 0.31 -0.85 16 5 C 0.52 6.53 6.48 -10.99 -0.07 6.46 16 6 O -0.54 -8.38 15.98 5.55 0.09 -8.29 16 7 N -0.71 -8.87 5.31 -61.47 -0.33 -9.20 16 8 C 0.10 1.25 6.16 -5.19 -0.03 1.22 16 9 C 0.49 7.97 7.73 -10.99 -0.08 7.89 16 10 O -0.53 -10.51 13.09 5.56 0.07 -10.44 16 11 N -0.64 -10.57 5.30 -9.74 -0.05 -10.62 16 12 C 0.00 -0.02 6.31 -83.57 -0.53 -0.54 16 13 C -0.09 -2.20 8.61 -39.79 -0.34 -2.54 16 14 C -0.15 -3.81 8.61 -39.26 -0.34 -4.15 16 15 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 16 C -0.46 -12.11 9.02 -37.85 -0.34 -12.45 16 17 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 18 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 19 N -0.81 -21.13 10.61 55.55 0.59 -20.54 16 20 Si 0.92 18.82 29.56 -169.99 -5.03 13.79 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 C -0.20 -4.83 9.74 -39.26 -0.38 -5.21 16 25 C -0.11 -2.33 9.90 -39.79 -0.39 -2.72 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.06 0.56 7.56 -51.93 -0.39 0.16 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.54 7.57 -51.93 -0.39 0.15 16 35 H 0.41 5.15 6.27 -40.82 -0.26 4.89 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.40 4.95 8.82 -40.82 -0.36 4.59 16 39 H 0.11 2.56 6.22 -52.49 -0.33 2.23 16 40 H 0.13 3.58 6.15 -52.49 -0.32 3.25 16 41 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 42 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 43 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -31.01 358.12 -7.92 -38.93 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.24 Total: 12.77 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.43 Total: -11.81 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.21 Total: -40.36 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.16 Total: -18.73 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.01 -7.92 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028436094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.806 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds