Wall clock time and date at job start Tue Mar 31 2020 08:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46877 * 2 1 4 4 C 1.53002 * 109.46753 * 240.00246 * 2 1 3 5 5 C 1.50694 * 109.47120 * 120.00326 * 2 1 3 6 6 O 1.21285 * 120.00357 * 359.97438 * 5 2 1 7 7 N 1.34776 * 119.99806 * 180.02562 * 5 2 1 8 8 C 1.46506 * 119.99888 * 180.02562 * 7 5 2 9 9 C 1.50701 * 109.46860 * 179.97438 * 8 7 5 10 10 O 1.21273 * 120.00122 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99729 * 179.97438 * 9 8 7 12 12 C 1.39230 * 120.00132 * 184.29391 * 11 9 8 13 13 C 1.39488 * 119.83491 * 324.71459 * 12 11 9 14 14 C 1.36369 * 120.16815 * 180.29701 * 13 12 11 15 15 C 1.40868 * 119.83187 * 359.48081 * 14 13 12 16 16 C 1.41157 * 120.16787 * 180.25497 * 15 14 13 17 17 H 1.07997 * 120.00057 * 215.01831 * 16 15 14 18 18 C 1.39907 * 119.99736 * 35.00954 * 16 15 14 19 19 N 1.30868 * 120.00224 * 355.54662 * 18 16 15 20 20 Si 1.86804 * 119.99669 * 175.55178 * 18 16 15 21 21 H 1.48497 * 109.47411 * 89.99814 * 20 18 16 22 22 H 1.48499 * 109.46679 * 210.00225 * 20 18 16 23 23 H 1.48503 * 109.46788 * 329.99782 * 20 18 16 24 24 C 1.40869 * 119.66984 * 0.51410 * 15 14 13 25 25 C 1.36371 * 119.83090 * 359.73785 * 24 15 14 26 26 H 1.09001 * 109.47533 * 299.99335 * 1 2 3 27 27 H 1.09002 * 109.47485 * 59.99698 * 1 2 3 28 28 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46693 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47489 * 300.00155 * 3 2 1 31 31 H 1.09002 * 109.46511 * 60.00586 * 3 2 1 32 32 H 1.08991 * 109.47531 * 299.99512 * 4 2 1 33 33 H 1.09000 * 109.47409 * 60.00499 * 4 2 1 34 34 H 1.09004 * 109.46426 * 179.97438 * 4 2 1 35 35 H 0.96996 * 120.00333 * 359.97438 * 7 5 2 36 36 H 1.09006 * 109.46989 * 59.99818 * 8 7 5 37 37 H 1.08996 * 109.46914 * 300.00009 * 8 7 5 38 38 H 0.97004 * 120.00223 * 4.29910 * 11 9 8 39 39 H 1.07997 * 119.90929 * 0.02562 * 13 12 11 40 40 H 1.08002 * 120.08447 * 179.70013 * 14 13 12 41 41 H 0.96996 * 120.00226 * 179.97438 * 19 18 16 42 42 H 1.08006 * 120.08685 * 179.71143 * 24 15 14 43 43 H 1.07996 * 119.92011 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2442 -1.1710 2.0290 7 7 3.3574 -0.8331 1.4439 8 6 3.8457 -1.5243 2.6398 9 6 5.3528 -1.5242 2.6397 10 8 5.9591 -0.9981 1.7307 11 7 6.0266 -2.1078 3.6505 12 6 7.4160 -2.0303 3.6972 13 6 8.1527 -2.0567 2.5130 14 6 9.5141 -1.9874 2.5512 15 6 10.1757 -1.8779 3.7900 16 6 11.5844 -1.8002 3.8374 17 1 12.1235 -2.2612 4.6517 18 6 12.2821 -1.1263 2.8292 19 7 11.6374 -0.6434 1.7977 20 14 14.1339 -0.9159 2.9554 21 1 14.8085 -2.0694 2.3077 22 1 14.5369 0.3401 2.2733 23 1 14.5284 -0.8510 4.3856 24 6 9.4249 -1.8518 4.9816 25 6 8.0644 -1.9272 4.9280 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9562 0.8901 32 1 1.6767 -1.7488 -1.2494 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7208 -1.2495 35 1 3.9877 -0.4645 0.8054 36 1 3.4828 -2.5522 2.6390 37 1 3.4820 -1.0112 3.5299 38 1 5.5437 -2.5818 4.3455 39 1 7.6437 -2.1366 1.5639 40 1 10.0834 -2.0128 1.6337 41 1 12.1211 -0.1758 1.0990 42 1 9.9256 -1.7728 5.9354 43 1 7.4874 -1.9078 5.8406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028436094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:08 Heat of formation + Delta-G solvation = -85.632819 kcal Electronic energy + Delta-G solvation = -24056.977471 eV Core-core repulsion = 20486.456141 eV Total energy + Delta-G solvation = -3570.521330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.65094 -40.86025 -39.10764 -36.64540 -36.31624 -35.51712 -34.73590 -31.50474 -31.09854 -29.26964 -28.25262 -27.93981 -26.56019 -23.97029 -23.21804 -22.65247 -21.36404 -20.53314 -19.23827 -18.71390 -18.01922 -17.37209 -17.08081 -16.95416 -16.80053 -15.98761 -15.76150 -15.54430 -15.04057 -14.78779 -14.62146 -14.49490 -14.29080 -13.94725 -13.79161 -13.45877 -13.35926 -13.30841 -13.07867 -12.88801 -12.85755 -12.67290 -12.63695 -12.32361 -11.91848 -11.87806 -11.80037 -11.70786 -11.25520 -10.86065 -10.80029 -10.54162 -10.26110 -9.45958 -8.77167 -8.50409 -6.33507 0.76808 1.12892 1.39149 1.41218 1.52729 1.54615 1.66680 1.83445 2.23437 2.46803 2.81074 3.52785 3.64765 3.71603 3.83304 3.90738 4.21419 4.28507 4.34685 4.43572 4.48180 4.69937 4.70374 4.81548 4.92638 4.94710 4.97277 5.00622 5.09813 5.13970 5.18296 5.24915 5.30244 5.32963 5.36923 5.40681 5.70451 5.84719 6.05628 6.13900 6.34437 6.40299 6.59865 6.70746 6.95789 7.00486 7.10447 7.26880 8.42450 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.002635 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.244563 B =10622.307727 C =11396.926226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.522 3.478 6 O -0.576 6.576 7 N -0.715 5.715 8 C 0.111 3.889 9 C 0.497 3.503 10 O -0.565 6.565 11 N -0.636 5.636 12 C 0.017 3.983 13 C -0.105 4.105 14 C -0.169 4.169 15 C 0.066 3.934 16 C -0.496 4.496 17 H 0.079 0.921 18 C 0.023 3.977 19 N -0.845 5.845 20 Si 0.989 3.011 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.211 4.211 25 C -0.105 4.105 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.413 0.587 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.422 0.578 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.282 0.718 42 H 0.111 0.889 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.214 1.173 -2.952 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.086 4.086 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.310 3.690 6 O -0.455 6.455 7 N -0.370 5.370 8 C -0.017 4.017 9 C 0.284 3.716 10 O -0.444 6.444 11 N -0.282 5.282 12 C -0.076 4.076 13 C -0.125 4.125 14 C -0.189 4.189 15 C 0.064 3.936 16 C -0.527 4.527 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.473 5.473 20 Si 0.810 3.190 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.180 1.180 24 C -0.231 4.231 25 C -0.125 4.125 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.252 0.748 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.260 0.740 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.331 1.343 -3.218 17.678 hybrid contribution 1.164 0.057 0.009 1.165 sum -16.167 1.400 -3.209 16.541 Atomic orbital electron populations 1.21658 0.91310 1.02408 1.02758 1.20870 0.98378 0.96940 0.92425 1.21902 1.01358 0.92827 1.03757 1.21900 1.01380 1.00447 0.96090 1.21170 0.81123 0.78782 0.87913 1.90666 1.56006 1.50407 1.48457 1.45844 1.07792 1.58313 1.25051 1.21049 0.88440 1.01159 0.91011 1.21032 0.90589 0.77739 0.82207 1.90703 1.70438 1.46526 1.36709 1.42738 1.04707 1.53435 1.27296 1.17311 0.82170 1.14418 0.93703 1.20662 0.93890 1.01086 0.96859 1.21177 0.93239 1.05625 0.98895 1.18080 0.94331 0.89453 0.91762 1.19767 0.92243 1.32388 1.08268 0.90325 1.26823 1.05614 0.93162 0.93252 1.69892 1.39433 1.29435 1.08494 0.85091 0.75756 0.78490 0.79650 1.18708 1.19723 1.18041 1.20965 0.93721 1.10931 0.97501 1.20450 0.94358 1.01927 0.95777 0.92960 0.89507 0.92914 0.92284 0.89047 0.92499 0.92424 0.89073 0.92241 0.74847 0.86727 0.86828 0.74000 0.88073 0.87687 0.90711 0.87047 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 7.76 71.98 0.56 -1.40 16 2 C -0.08 -1.42 0.87 -52.93 -0.05 -1.47 16 3 C -0.14 -2.07 8.37 71.98 0.60 -1.47 16 4 C -0.14 -2.03 8.37 71.98 0.60 -1.43 16 5 C 0.52 12.32 6.48 87.66 0.57 12.89 16 6 O -0.58 -16.98 15.98 -3.04 -0.05 -17.03 16 7 N -0.72 -16.79 5.31 -466.77 -2.48 -19.27 16 8 C 0.11 2.50 6.16 85.63 0.53 3.03 16 9 C 0.50 15.24 7.73 87.66 0.68 15.92 16 10 O -0.56 -22.38 13.09 -3.01 -0.04 -22.42 16 11 N -0.64 -19.30 5.30 -303.11 -1.61 -20.91 16 12 C 0.02 0.72 6.31 38.57 0.24 0.96 16 13 C -0.10 -5.14 8.61 22.14 0.19 -4.95 16 14 C -0.17 -9.27 8.61 22.48 0.19 -9.07 16 15 C 0.07 3.58 5.55 -21.28 -0.12 3.46 16 16 C -0.50 -26.84 9.02 23.39 0.21 -26.63 16 17 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 18 C 0.02 1.19 5.42 85.24 0.46 1.65 16 19 N -0.84 -46.17 10.61 21.82 0.23 -45.94 16 20 Si 0.99 39.22 29.56 68.60 2.03 41.25 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 C -0.21 -9.87 9.74 22.48 0.22 -9.65 16 25 C -0.11 -4.22 9.90 22.14 0.22 -4.00 16 26 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.93 8.10 -2.38 -0.02 0.91 16 29 H 0.06 0.94 7.56 -2.39 -0.02 0.92 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.92 7.57 -2.38 -0.02 0.91 16 35 H 0.41 9.95 6.27 -92.71 -0.58 9.37 16 36 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.42 8.93 8.82 -92.71 -0.82 8.11 16 39 H 0.10 5.00 6.22 -2.91 -0.02 4.98 16 40 H 0.11 6.18 6.15 -2.91 -0.02 6.16 16 41 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 42 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -69.89 358.12 2.83 -67.06 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -0.36 Total: 39.42 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 5.11 Total: -22.16 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -3.86 Total: -86.12 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.09 Total: -39.45 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -69.89 2.83 -67.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028436094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.572 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds