Wall clock time and date at job start Tue Mar 31 2020 09:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47449 * 2 1 4 4 C 1.50702 * 109.46936 * 119.99817 * 2 1 3 5 5 O 1.21276 * 120.00004 * 239.99998 * 4 2 1 6 6 N 1.34781 * 119.99965 * 60.00335 * 4 2 1 7 7 C 1.46499 * 119.99825 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.46762 * 179.97438 * 7 6 4 9 9 N 1.46499 * 109.46762 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99825 * 180.02562 * 9 8 7 11 11 O 1.21542 * 120.00087 * 359.97438 * 10 9 8 12 12 C 1.47890 * 119.99714 * 180.02562 * 10 9 8 13 13 C 1.39913 * 120.02810 * 359.96967 * 12 10 9 14 14 C 1.38333 * 120.36039 * 180.02562 * 13 12 10 15 15 C 1.37756 * 120.40995 * 359.96274 * 14 13 12 16 16 C 1.40753 * 120.03756 * 0.04042 * 15 14 13 17 17 C 1.41435 * 120.17333 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00291 * 24.39761 * 17 16 15 19 19 C 1.39938 * 119.99544 * 204.40500 * 17 16 15 20 20 N 1.30830 * 120.00373 * 17.83908 * 19 17 16 21 21 Si 1.86800 * 119.99826 * 197.83568 * 19 17 16 22 22 H 1.48501 * 109.47279 * 59.99836 * 21 19 17 23 23 H 1.48504 * 109.47252 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47104 * 300.00046 * 21 19 17 25 25 C 1.38993 * 120.02183 * 179.97438 * 12 10 9 26 26 H 1.08998 * 109.47408 * 300.00115 * 1 2 3 27 27 H 1.09006 * 109.47163 * 60.00298 * 1 2 3 28 28 H 1.08998 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47408 * 239.99885 * 2 1 3 30 30 H 1.08995 * 109.47024 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46929 * 300.00043 * 3 2 1 32 32 H 1.08998 * 109.46910 * 59.99580 * 3 2 1 33 33 H 0.96996 * 120.00191 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.47017 * 60.00103 * 7 6 4 35 35 H 1.08999 * 109.47024 * 299.99731 * 7 6 4 36 36 H 1.08998 * 109.46910 * 60.00479 * 8 7 6 37 37 H 1.08999 * 109.47491 * 299.99886 * 8 7 6 38 38 H 0.97004 * 120.00307 * 0.02562 * 9 8 7 39 39 H 1.08005 * 119.82032 * 0.02924 * 13 12 10 40 40 H 1.07998 * 119.79353 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.97966 * 180.02562 * 15 14 13 42 42 H 0.96995 * 119.99719 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.20452 * 359.69875 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7294 -0.1210 2.0288 6 7 1.7066 -2.0008 1.4438 7 6 2.1954 -2.6915 2.6397 8 6 1.6848 -4.1338 2.6400 9 7 2.1741 -4.8247 3.8357 10 6 1.8486 -6.1151 4.0489 11 8 1.1488 -6.7054 3.2495 12 6 2.3420 -6.8124 5.2561 13 6 3.1473 -6.1332 6.1769 14 6 3.6131 -6.7789 7.3082 15 6 3.2891 -8.0973 7.5418 16 6 2.4802 -8.7968 6.6267 17 6 2.1463 -10.1506 6.8634 18 1 2.1528 -10.5403 7.8706 19 6 1.8076 -10.9852 5.7924 20 7 2.1262 -10.6433 4.5704 21 14 0.9006 -12.5876 6.1076 22 1 -0.4003 -12.2994 6.7632 23 1 0.6620 -13.2834 4.8175 24 1 1.7197 -13.4542 6.9927 25 6 2.0062 -8.1429 5.4768 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.1487 -2.4721 0.8055 34 1 1.8324 -2.1777 3.5298 35 1 3.2854 -2.6915 2.6393 36 1 2.0475 -4.6478 1.7499 37 1 0.5948 -4.1334 2.6407 38 1 2.7323 -4.3535 4.4739 39 1 3.4066 -5.0992 6.0036 40 1 4.2344 -6.2460 8.0127 41 1 3.6562 -8.5944 8.4275 42 1 1.8910 -11.2217 3.8281 43 1 1.3809 -8.6698 4.7711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042385309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:29 Heat of formation + Delta-G solvation = -74.440620 kcal Electronic energy + Delta-G solvation = -23474.914154 eV Core-core repulsion = 19904.878154 eV Total energy + Delta-G solvation = -3570.036000 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.19198 -39.24302 -37.12741 -35.87955 -34.81657 -33.92752 -33.57663 -30.53140 -29.47916 -28.74522 -27.42189 -25.37214 -24.34158 -22.71649 -21.99551 -20.95092 -20.17151 -19.59019 -17.88025 -17.45100 -16.30162 -16.18211 -16.03074 -15.32030 -15.28484 -14.99916 -14.64544 -14.28679 -14.12031 -13.72879 -13.54719 -13.20465 -13.05145 -12.69200 -12.66870 -12.52053 -12.30805 -11.93154 -11.90704 -11.64341 -11.53788 -11.44269 -11.17316 -11.09868 -10.77066 -10.52884 -10.09383 -10.03213 -9.72344 -9.37148 -9.23392 -9.11163 -8.80041 -7.66591 -7.54997 -6.82636 -4.43836 2.16322 2.38389 2.72626 2.79865 3.05866 3.07494 3.14838 3.76114 3.81108 3.89963 4.31465 4.47130 4.56491 4.60567 4.61443 4.93997 5.00158 5.21821 5.28858 5.32250 5.46216 5.54051 5.57436 5.60139 5.74069 5.76963 5.85641 5.90380 6.06450 6.11595 6.25207 6.69181 6.71593 6.95586 6.98394 7.17803 7.18867 7.35132 7.66171 7.71679 7.88808 7.94534 8.01926 8.15394 8.47406 8.77176 8.80344 8.86239 10.12065 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.002364 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.681292 B =11842.887596 C =12680.009946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.133 4.133 4 C 0.516 3.484 5 O -0.538 6.538 6 N -0.727 5.727 7 C 0.108 3.892 8 C 0.112 3.888 9 N -0.735 5.735 10 C 0.567 3.433 11 O -0.545 6.545 12 C -0.129 4.129 13 C -0.218 4.218 14 C -0.097 4.097 15 C -0.211 4.211 16 C 0.098 3.902 17 C -0.459 4.459 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.911 3.089 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.092 4.092 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.285 0.715 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 16.013 -9.014 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.191 4.191 4 C 0.303 3.697 5 O -0.415 6.415 6 N -0.380 5.380 7 C -0.017 4.017 8 C -0.013 4.013 9 N -0.390 5.390 10 C 0.358 3.642 11 O -0.423 6.423 12 C -0.132 4.132 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.231 4.231 16 C 0.095 3.905 17 C -0.488 4.488 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.112 4.112 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.238 0.762 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.456 15.916 -9.271 18.583 hybrid contribution -0.259 -0.771 0.036 0.814 sum -2.716 15.145 -9.234 17.945 Atomic orbital electron populations 1.21807 0.92764 1.02667 1.03083 1.21317 0.97692 0.98138 0.96486 1.21616 1.01844 0.93451 1.02155 1.20733 0.79908 0.81358 0.87749 1.90713 1.37676 1.65984 1.47094 1.45853 1.54167 1.12368 1.25567 1.21472 1.00060 0.91703 0.88426 1.21272 0.99682 0.90502 0.89828 1.45763 1.55452 1.12849 1.24982 1.18849 0.78927 0.80208 0.86238 1.90697 1.38222 1.66074 1.47259 1.19424 1.03538 0.95669 0.94553 1.20347 1.07479 0.98090 0.97926 1.20446 0.99638 0.94978 0.96488 1.21110 1.04439 0.95098 1.02464 1.17601 0.88933 0.93160 0.90756 1.19563 1.40516 0.94134 0.94608 0.90068 1.25974 0.93748 1.00390 0.94517 1.69783 1.33584 1.37243 1.00138 0.86316 0.80755 0.80723 0.78680 1.18700 1.20223 1.18948 1.21634 0.99583 0.90940 0.99031 0.91945 0.91274 0.92004 0.88383 0.91919 0.91995 0.91885 0.76235 0.90694 0.90670 0.91184 0.91212 0.76239 0.89175 0.88828 0.88571 0.90368 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.09 37.15 0.34 -0.45 16 2 C -0.11 -0.79 3.26 -91.77 -0.30 -1.09 16 3 C -0.13 -0.96 8.48 37.16 0.32 -0.65 16 4 C 0.52 5.33 7.15 -10.98 -0.08 5.25 16 5 O -0.54 -7.77 15.98 5.56 0.09 -7.68 16 6 N -0.73 -6.49 5.45 -60.29 -0.33 -6.82 16 7 C 0.11 1.13 5.79 -4.04 -0.02 1.11 16 8 C 0.11 1.40 5.79 -4.04 -0.02 1.37 16 9 N -0.74 -11.57 5.51 -61.24 -0.34 -11.91 16 10 C 0.57 12.06 7.77 -12.31 -0.10 11.96 16 11 O -0.54 -13.26 16.33 5.33 0.09 -13.17 16 12 C -0.13 -2.99 5.87 -105.04 -0.62 -3.61 16 13 C -0.22 -4.53 9.55 -38.92 -0.37 -4.90 16 14 C -0.10 -2.06 10.01 -39.72 -0.40 -2.45 16 15 C -0.21 -4.98 9.78 -38.81 -0.38 -5.36 16 16 C 0.10 2.57 5.57 -106.87 -0.60 1.98 16 17 C -0.46 -11.97 9.05 -37.73 -0.34 -12.31 16 18 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.78 -20.57 10.96 55.55 0.61 -19.96 16 21 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.09 -2.42 8.23 -38.44 -0.32 -2.74 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.28 7.56 -51.93 -0.39 -0.11 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.40 2.60 7.89 -40.82 -0.32 2.28 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.40 5.52 6.49 -40.82 -0.26 5.26 16 39 H 0.09 1.53 6.38 -52.48 -0.33 1.20 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 42 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 43 H 0.13 3.81 5.75 -52.48 -0.30 3.51 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -31.96 363.39 -8.64 -40.60 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.23 Total: 10.01 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.97 Total: -10.13 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.06 Total: -38.68 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.18 Total: -20.85 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.96 -8.64 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042385309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.840 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds