Wall clock time and date at job start Tue Mar 31 2020 09:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47449 * 2 1 4 4 C 1.50702 * 109.46936 * 119.99817 * 2 1 3 5 5 O 1.21276 * 120.00004 * 239.99998 * 4 2 1 6 6 N 1.34781 * 119.99965 * 60.00335 * 4 2 1 7 7 C 1.46499 * 119.99825 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.46762 * 179.97438 * 7 6 4 9 9 N 1.46499 * 109.46762 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99825 * 180.02562 * 9 8 7 11 11 O 1.21542 * 120.00087 * 359.97438 * 10 9 8 12 12 C 1.47890 * 119.99714 * 180.02562 * 10 9 8 13 13 C 1.39913 * 120.02810 * 359.96967 * 12 10 9 14 14 C 1.38333 * 120.36039 * 180.02562 * 13 12 10 15 15 C 1.37756 * 120.40995 * 359.96274 * 14 13 12 16 16 C 1.40753 * 120.03756 * 0.04042 * 15 14 13 17 17 C 1.41435 * 120.17333 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00291 * 24.39761 * 17 16 15 19 19 C 1.39938 * 119.99544 * 204.40500 * 17 16 15 20 20 N 1.30830 * 120.00373 * 17.83908 * 19 17 16 21 21 Si 1.86800 * 119.99826 * 197.83568 * 19 17 16 22 22 H 1.48501 * 109.47279 * 59.99836 * 21 19 17 23 23 H 1.48504 * 109.47252 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47104 * 300.00046 * 21 19 17 25 25 C 1.38993 * 120.02183 * 179.97438 * 12 10 9 26 26 H 1.08998 * 109.47408 * 300.00115 * 1 2 3 27 27 H 1.09006 * 109.47163 * 60.00298 * 1 2 3 28 28 H 1.08998 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47408 * 239.99885 * 2 1 3 30 30 H 1.08995 * 109.47024 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46929 * 300.00043 * 3 2 1 32 32 H 1.08998 * 109.46910 * 59.99580 * 3 2 1 33 33 H 0.96996 * 120.00191 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.47017 * 60.00103 * 7 6 4 35 35 H 1.08999 * 109.47024 * 299.99731 * 7 6 4 36 36 H 1.08998 * 109.46910 * 60.00479 * 8 7 6 37 37 H 1.08999 * 109.47491 * 299.99886 * 8 7 6 38 38 H 0.97004 * 120.00307 * 0.02562 * 9 8 7 39 39 H 1.08005 * 119.82032 * 0.02924 * 13 12 10 40 40 H 1.07998 * 119.79353 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.97966 * 180.02562 * 15 14 13 42 42 H 0.96995 * 119.99719 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.20452 * 359.69875 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7294 -0.1210 2.0288 6 7 1.7066 -2.0008 1.4438 7 6 2.1954 -2.6915 2.6397 8 6 1.6848 -4.1338 2.6400 9 7 2.1741 -4.8247 3.8357 10 6 1.8486 -6.1151 4.0489 11 8 1.1488 -6.7054 3.2495 12 6 2.3420 -6.8124 5.2561 13 6 3.1473 -6.1332 6.1769 14 6 3.6131 -6.7789 7.3082 15 6 3.2891 -8.0973 7.5418 16 6 2.4802 -8.7968 6.6267 17 6 2.1463 -10.1506 6.8634 18 1 2.1528 -10.5403 7.8706 19 6 1.8076 -10.9852 5.7924 20 7 2.1262 -10.6433 4.5704 21 14 0.9006 -12.5876 6.1076 22 1 -0.4003 -12.2994 6.7632 23 1 0.6620 -13.2834 4.8175 24 1 1.7197 -13.4542 6.9927 25 6 2.0062 -8.1429 5.4768 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.1487 -2.4721 0.8055 34 1 1.8324 -2.1777 3.5298 35 1 3.2854 -2.6915 2.6393 36 1 2.0475 -4.6478 1.7499 37 1 0.5948 -4.1334 2.6407 38 1 2.7323 -4.3535 4.4739 39 1 3.4066 -5.0992 6.0036 40 1 4.2344 -6.2460 8.0127 41 1 3.6562 -8.5944 8.4275 42 1 1.8910 -11.2217 3.8281 43 1 1.3809 -8.6698 4.7711 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042385309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:28 Heat of formation + Delta-G solvation = -96.231605 kcal Electronic energy + Delta-G solvation = -23475.859082 eV Core-core repulsion = 19904.878154 eV Total energy + Delta-G solvation = -3570.980928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12841 -40.76929 -38.86989 -37.02692 -35.64836 -35.47554 -34.90282 -32.21850 -31.29080 -29.94796 -27.93366 -27.20410 -25.40752 -23.88698 -23.22274 -22.72797 -21.28079 -20.88577 -19.55986 -18.34703 -17.82198 -17.39403 -17.02339 -16.78567 -16.51355 -16.37685 -16.20297 -15.37662 -15.30113 -15.07878 -14.87232 -14.48919 -14.38015 -14.26729 -13.70443 -13.49362 -13.17104 -13.02118 -12.97594 -12.88566 -12.81399 -12.78185 -12.52328 -12.20024 -12.05259 -11.97823 -11.91937 -11.51626 -11.06719 -10.96641 -10.75959 -10.27703 -10.16139 -9.48332 -9.39250 -8.66922 -6.38251 0.36396 1.01008 1.36660 1.47934 1.50942 1.59529 1.77236 2.07694 2.19389 2.57833 2.78075 3.55178 3.69331 3.72659 3.96470 4.01298 4.03615 4.07537 4.33283 4.42515 4.49733 4.59146 4.77193 4.77644 4.80129 4.90018 4.91633 4.94703 5.08558 5.09273 5.18498 5.23220 5.30553 5.32986 5.35164 5.41784 5.51583 5.85292 5.92054 6.04777 6.28063 6.44525 6.48810 6.64617 6.87591 6.93929 7.18390 7.25164 8.29782 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.002364 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.681292 B =11842.887596 C =12680.009946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.512 3.488 5 O -0.584 6.584 6 N -0.717 5.717 7 C 0.119 3.881 8 C 0.116 3.884 9 N -0.713 5.713 10 C 0.565 3.435 11 O -0.584 6.584 12 C -0.139 4.139 13 C -0.199 4.199 14 C -0.097 4.097 15 C -0.217 4.217 16 C 0.066 3.934 17 C -0.497 4.497 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.824 5.824 21 Si 0.983 3.017 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.131 4.131 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.417 0.583 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.414 0.586 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 17.717 -9.271 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.191 4.191 4 C 0.300 3.700 5 O -0.464 6.464 6 N -0.370 5.370 7 C -0.006 4.006 8 C -0.008 4.008 9 N -0.367 5.367 10 C 0.355 3.645 11 O -0.465 6.465 12 C -0.142 4.142 13 C -0.218 4.218 14 C -0.114 4.114 15 C -0.237 4.237 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.450 5.450 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.151 4.151 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.254 0.746 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.252 0.748 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.320 17.661 -9.531 20.202 hybrid contribution -0.218 -1.070 0.131 1.099 sum -2.538 16.591 -9.400 19.237 Atomic orbital electron populations 1.21818 0.91338 1.03476 1.03432 1.21378 0.98711 0.97539 0.95432 1.21628 1.00962 0.93942 1.02553 1.21406 0.79021 0.81338 0.88227 1.90694 1.39859 1.66979 1.48873 1.45773 1.53882 1.12139 1.25248 1.21253 0.99836 0.90263 0.89210 1.21381 0.99914 0.91255 0.88290 1.45527 1.54213 1.11028 1.25941 1.18647 0.78802 0.81680 0.85415 1.90676 1.40117 1.67419 1.48313 1.19748 1.03551 0.95028 0.95911 1.20865 1.04679 0.99877 0.96409 1.20931 0.99212 0.94130 0.97174 1.21413 1.03729 0.96387 1.02202 1.17959 0.90094 0.93910 0.91692 1.19839 1.42797 0.94886 0.95124 0.89811 1.26861 0.93935 1.03855 0.93939 1.69881 1.35199 1.38817 1.01074 0.85238 0.79301 0.76365 0.78763 1.18481 1.19600 1.17713 1.21452 1.01453 0.92660 0.99542 0.93126 0.89430 0.90994 0.86043 0.93330 0.89574 0.93481 0.74595 0.90761 0.90870 0.91098 0.90826 0.74757 0.84561 0.84457 0.87403 0.90236 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.09 71.98 0.65 -0.51 16 2 C -0.11 -1.27 3.26 -11.54 -0.04 -1.30 16 3 C -0.13 -1.74 8.48 71.98 0.61 -1.13 16 4 C 0.51 9.77 7.15 87.66 0.63 10.40 16 5 O -0.58 -16.48 15.98 -3.02 -0.05 -16.53 16 6 N -0.72 -11.31 5.45 -463.06 -2.52 -13.83 16 7 C 0.12 2.25 5.79 86.38 0.50 2.75 16 8 C 0.12 2.67 5.79 86.38 0.50 3.17 16 9 N -0.71 -21.05 5.51 -465.93 -2.57 -23.61 16 10 C 0.56 23.88 7.77 86.80 0.67 24.55 16 11 O -0.58 -29.13 16.33 -3.85 -0.06 -29.19 16 12 C -0.14 -6.46 5.87 -20.13 -0.12 -6.58 16 13 C -0.20 -7.69 9.55 22.70 0.22 -7.47 16 14 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 15 C -0.22 -10.14 9.78 22.77 0.22 -9.91 16 16 C 0.07 3.56 5.57 -21.32 -0.12 3.44 16 17 C -0.50 -26.98 9.05 23.47 0.21 -26.77 16 18 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 19 C 0.03 1.52 5.14 85.25 0.44 1.96 16 20 N -0.82 -45.64 10.96 21.83 0.24 -45.41 16 21 Si 0.98 39.33 29.59 68.60 2.03 41.36 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.13 -7.18 8.23 23.01 0.19 -6.99 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 27 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.07 0.45 7.56 -2.39 -0.02 0.43 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.42 4.32 7.89 -92.71 -0.73 3.59 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.41 10.04 6.49 -92.71 -0.60 9.44 16 39 H 0.14 3.96 6.38 -2.91 -0.02 3.94 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.29 14.64 8.30 -92.71 -0.77 13.87 16 43 H 0.10 6.14 5.75 -2.91 -0.02 6.12 16 Total: -1.00 -74.16 363.39 1.56 -72.59 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.30 Total: 32.60 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 4.79 Total: -17.98 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -4.85 Total: -82.85 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -0.11 Total: -45.72 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -74.16 1.56 -72.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042385309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.637 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds