Wall clock time and date at job start Tue Mar 31 2020 09:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 H 1.09006 * 109.46760 * 55.00171 * 3 2 1 5 5 C 1.52998 * 109.47258 * 295.00383 * 3 2 1 6 6 C 1.52999 * 109.47199 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46669 * 60.00148 * 6 5 3 8 8 C 1.53001 * 109.47162 * 299.99305 * 7 6 5 9 9 C 1.52999 * 109.46760 * 60.00751 * 8 7 6 10 10 H 1.09006 * 109.47243 * 59.99653 * 9 8 7 11 11 N 1.46496 * 109.47351 * 179.97438 * 9 8 7 12 12 S 1.65601 * 119.99945 * 265.00016 * 11 9 8 13 13 O 1.42098 * 106.40163 * 311.45608 * 12 11 9 14 14 O 1.42103 * 106.40462 * 178.53587 * 12 11 9 15 15 N 1.65605 * 107.21978 * 64.99669 * 12 11 9 16 16 C 1.46493 * 119.99847 * 270.00091 * 15 12 11 17 17 C 1.46497 * 119.99964 * 90.00141 * 15 12 11 18 18 C 1.50694 * 109.47115 * 95.00066 * 17 15 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 H 1.09000 * 109.47132 * 299.99868 * 1 2 3 27 27 H 1.08998 * 109.47098 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47365 * 240.00563 * 2 1 3 30 30 H 1.08997 * 109.47772 * 120.00637 * 2 1 3 31 31 H 1.09006 * 109.47061 * 299.99603 * 5 3 2 32 32 H 1.08995 * 109.47161 * 59.99602 * 5 3 2 33 33 H 1.09000 * 109.47257 * 179.97438 * 6 5 3 34 34 H 1.08994 * 109.47544 * 300.00359 * 6 5 3 35 35 H 1.08993 * 109.47609 * 60.00247 * 7 6 5 36 36 H 1.09008 * 109.46903 * 179.97438 * 7 6 5 37 37 H 1.08988 * 109.47363 * 300.00520 * 8 7 6 38 38 H 1.09006 * 109.46815 * 179.97438 * 8 7 6 39 39 H 0.96999 * 120.00387 * 84.99419 * 11 9 8 40 40 H 1.08996 * 109.47315 * 270.00108 * 16 15 12 41 41 H 1.09001 * 109.47413 * 30.00291 * 16 15 12 42 42 H 1.09004 * 109.47332 * 150.00131 * 16 15 12 43 43 H 1.09007 * 109.47078 * 334.99705 * 17 15 12 44 44 H 1.09003 * 109.46733 * 215.00428 * 17 15 12 45 45 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1447 3.5692 -1.3070 7 6 3.6696 3.5714 -1.1811 8 6 4.0744 2.8874 0.1263 9 6 3.5648 1.4448 0.1260 10 1 3.9998 0.9060 -0.7159 11 7 3.9529 0.7895 1.3775 12 16 5.3371 -0.1171 1.4428 13 8 5.3011 -0.9859 0.3190 14 8 5.4498 -0.5816 2.7811 15 7 6.6101 0.9133 1.1967 16 6 7.0976 1.1637 -0.1618 17 6 7.2486 1.5742 2.3376 18 6 8.4477 0.7734 2.7755 19 1 8.7080 -0.1371 2.2562 20 6 9.2120 1.2026 3.8398 21 7 8.8948 2.3111 4.4725 22 14 10.6980 0.2095 4.3830 23 1 10.2821 -0.7856 5.4037 24 1 11.2774 -0.4955 3.2115 25 1 11.7158 1.1204 4.9657 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5876 -2.1492 32 1 0.5490 2.1253 -1.3968 33 1 1.8568 4.0565 -2.2385 34 1 1.7099 4.1080 -0.4652 35 1 4.1045 3.0327 -2.0229 36 1 4.0327 4.5993 -1.1813 37 1 3.6395 3.4262 0.9680 38 1 5.1607 2.8886 0.2157 39 1 3.3991 0.8868 2.1679 40 1 7.8730 0.4386 -0.4090 41 1 6.2724 1.0679 -0.8675 42 1 7.5102 2.1709 -0.2199 43 1 6.5379 1.6444 3.1612 44 1 7.5668 2.5752 2.0461 45 1 9.4323 2.6128 5.2215 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048464613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:43 Heat of formation + Delta-G solvation = -108.155479 kcal Electronic energy + Delta-G solvation = -24976.137491 eV Core-core repulsion = 21540.083457 eV Total energy + Delta-G solvation = -3436.054034 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.38427 -36.53229 -35.49783 -35.12127 -34.11681 -33.93248 -32.41304 -29.47493 -28.32163 -27.75405 -25.03784 -23.98912 -22.30210 -22.24057 -20.74326 -20.18528 -18.73876 -17.21682 -16.75948 -16.42548 -16.12589 -15.17438 -14.92913 -14.61679 -14.26913 -14.13690 -14.00634 -13.54608 -13.34231 -13.20873 -12.98972 -12.76107 -12.39082 -12.08912 -11.83182 -11.67091 -11.60570 -11.44419 -11.41913 -11.30281 -11.16123 -11.13845 -11.05805 -10.81636 -10.70676 -10.58622 -10.49841 -10.42557 -10.07504 -9.99200 -9.74534 -9.15114 -8.42335 -8.03783 -6.04699 -4.08224 1.28364 3.34016 3.39821 3.43221 3.55259 4.18413 4.46427 4.49096 4.60297 4.70425 4.95263 5.02913 5.08715 5.17281 5.25744 5.26450 5.30442 5.36980 5.40412 5.52037 5.53748 5.60990 5.63530 5.80276 5.88425 5.93575 5.95291 6.02480 6.04941 6.08742 6.15470 6.18007 6.24738 6.32747 6.38589 6.51273 6.55528 7.14653 7.29574 7.44764 7.64235 7.93043 8.22929 8.94096 9.56854 11.03893 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.004398 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.803920 B = 6364.856592 C = 6909.890032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.088 4.088 4 H 0.075 0.925 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.143 4.143 9 C 0.158 3.842 10 H 0.086 0.914 11 N -1.128 6.128 12 S 2.781 3.219 13 O -0.998 6.998 14 O -0.967 6.967 15 N -0.996 5.996 16 C 0.107 3.893 17 C 0.259 3.741 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.897 5.897 22 Si 0.896 3.104 23 H -0.278 1.278 24 H -0.273 1.273 25 H -0.286 1.286 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.411 0.589 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 3.072 -12.042 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.108 4.108 4 H 0.094 0.906 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.182 4.182 9 C 0.051 3.949 10 H 0.104 0.896 11 N -0.886 5.886 12 S 2.789 3.211 13 O -0.981 6.981 14 O -0.950 6.950 15 N -0.839 5.839 16 C -0.039 4.039 17 C 0.137 3.863 18 C -0.567 4.567 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.536 5.536 22 Si 0.724 3.276 23 H -0.204 1.204 24 H -0.198 1.198 25 H -0.212 1.212 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.244 0.756 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.279 2.217 -11.905 19.495 hybrid contribution 0.667 0.042 0.758 1.010 sum -14.612 2.258 -11.147 18.516 Atomic orbital electron populations 1.21819 0.96057 1.01433 1.01618 1.21583 0.95459 0.96195 1.02852 1.21417 0.94328 0.96441 0.98623 0.90632 1.21628 1.00763 0.95630 0.97173 1.21567 0.96004 0.96646 1.01604 1.21510 0.95657 1.00725 0.97683 1.22167 1.02404 0.95536 0.98124 1.20761 0.95268 0.92976 0.85929 0.89566 1.56315 1.43376 1.70321 1.18545 1.01942 0.72487 0.73579 0.73114 1.93531 1.87028 1.63051 1.54535 1.93639 1.85628 1.78964 1.36797 1.57621 1.47264 1.65535 1.13486 1.21232 0.98831 1.01884 0.81990 1.19039 0.92991 0.92915 0.81316 1.21504 1.11066 1.09177 1.14987 0.92233 1.24926 0.97969 0.95116 0.96002 1.69920 1.39795 1.22002 1.21866 0.86525 0.82109 0.79955 0.79028 1.20431 1.19813 1.21170 0.92889 0.92661 0.92954 0.91688 0.91546 0.91724 0.91532 0.92126 0.91982 0.91843 0.91706 0.91235 0.90417 0.75611 0.93171 0.93108 0.91480 0.94507 0.94757 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 37.16 0.36 -0.94 16 2 C -0.12 -1.29 5.32 -26.73 -0.14 -1.43 16 3 C -0.09 -0.88 1.82 -90.62 -0.17 -1.05 16 4 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.11 -0.96 4.96 -26.73 -0.13 -1.09 16 6 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 7 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 8 C -0.14 -1.65 5.53 -26.73 -0.15 -1.80 16 9 C 0.16 1.94 2.26 -67.93 -0.15 1.79 16 10 H 0.09 1.12 7.06 -51.93 -0.37 0.75 16 11 N -1.13 -16.47 4.68 -4.89 -0.02 -16.50 16 12 S 2.78 54.99 6.03 -107.50 -0.65 54.34 16 13 O -1.00 -20.77 16.55 -57.17 -0.95 -21.72 16 14 O -0.97 -23.31 17.11 -57.17 -0.98 -24.28 16 15 N -1.00 -20.40 2.89 -123.06 -0.36 -20.75 16 16 C 0.11 1.82 9.19 59.84 0.55 2.37 16 17 C 0.26 6.45 5.12 -5.20 -0.03 6.42 16 18 C -0.53 -14.93 9.38 -34.44 -0.32 -15.25 16 19 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 22 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.77 7.45 -51.93 -0.39 0.39 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.50 6.56 -51.93 -0.34 0.16 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.07 0.80 8.14 -51.94 -0.42 0.38 16 38 H 0.08 1.02 6.60 -51.93 -0.34 0.67 16 39 H 0.41 5.33 8.84 -34.47 -0.30 5.03 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.72 7.35 -51.93 -0.38 0.34 16 42 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 43 H 0.04 0.98 7.61 -51.92 -0.40 0.58 16 44 H 0.03 0.86 7.96 -51.93 -0.41 0.45 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -33.21 361.59 -10.26 -43.47 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.88 Total: 0.19 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.60 Total: -11.71 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: 0.36 Total: -62.74 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -1.92 Total: -46.00 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.65 Total: 54.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.21 -10.26 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048464613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.685 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds