Wall clock time and date at job start Tue Mar 31 2020 09:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47189 * 2 1 4 4 H 1.09002 * 109.47373 * 305.00264 * 3 2 1 5 5 C 1.52999 * 109.46843 * 64.99984 * 3 2 1 6 6 C 1.53001 * 109.46843 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47317 * 299.99688 * 6 5 3 8 8 C 1.52999 * 109.46622 * 60.00097 * 7 6 5 9 9 C 1.52995 * 109.47061 * 184.99631 * 3 2 1 10 10 H 1.09000 * 109.46890 * 60.00187 * 9 3 2 11 11 N 1.46497 * 109.47338 * 300.00577 * 9 3 2 12 12 S 1.65597 * 120.00342 * 143.05708 * 11 9 3 13 13 O 1.42093 * 106.40483 * 176.09930 * 12 11 9 14 14 O 1.42101 * 106.40000 * 309.01799 * 12 11 9 15 15 N 1.65599 * 107.22288 * 62.55584 * 12 11 9 16 16 C 1.46503 * 120.00263 * 263.79674 * 15 12 11 17 17 C 1.46500 * 119.99745 * 83.78634 * 15 12 11 18 18 C 1.50701 * 109.46689 * 95.38645 * 17 15 12 19 19 H 1.08002 * 119.99961 * 4.75462 * 18 17 15 20 20 C 1.37879 * 119.99796 * 184.75776 * 18 17 15 21 21 N 1.31512 * 120.00444 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99815 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47362 * 89.99978 * 22 20 18 24 24 H 1.48506 * 109.47323 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47345 * 329.99854 * 22 20 18 26 26 H 1.09004 * 109.46981 * 59.99914 * 1 2 3 27 27 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47397 * 300.00071 * 1 2 3 29 29 H 1.08992 * 109.46638 * 240.00016 * 2 1 3 30 30 H 1.08994 * 109.46822 * 120.00023 * 2 1 3 31 31 H 1.08994 * 109.47516 * 59.99885 * 5 3 2 32 32 H 1.09002 * 109.47534 * 299.99389 * 5 3 2 33 33 H 1.09010 * 109.47146 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47373 * 60.00280 * 6 5 3 35 35 H 1.08993 * 109.47258 * 300.00550 * 7 6 5 36 36 H 1.08996 * 109.47332 * 180.02562 * 7 6 5 37 37 H 1.09009 * 109.47115 * 180.02562 * 8 7 6 38 38 H 1.09004 * 109.47358 * 60.00172 * 8 7 6 39 39 H 0.97003 * 119.99883 * 323.04284 * 11 9 3 40 40 H 1.08993 * 109.47207 * 89.99588 * 16 15 12 41 41 H 1.09000 * 109.46842 * 210.00126 * 16 15 12 42 42 H 1.08999 * 109.46532 * 329.99180 * 16 15 12 43 43 H 1.08997 * 109.47249 * 215.38549 * 17 15 12 44 44 H 1.08995 * 109.47570 * 335.39055 * 17 15 12 45 45 H 0.96995 * 120.00314 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.1447 3.5692 1.3071 7 6 3.6695 3.5716 1.1811 8 6 4.0743 2.8875 -0.1262 9 6 3.5648 1.4443 -0.1256 10 1 3.8532 0.9570 -1.0570 11 7 4.1489 0.7197 1.0057 12 16 5.4928 -0.2215 0.7814 13 8 5.8615 -0.7071 2.0649 14 8 5.2066 -1.0736 -0.3192 15 7 6.7168 0.7803 0.2911 16 6 7.0129 0.9312 -1.1358 17 6 7.5034 1.5160 1.2842 18 6 8.7583 0.7445 1.6025 19 1 8.9887 -0.1599 1.0590 20 6 9.6122 1.1934 2.5876 21 7 9.3319 2.2949 3.2492 22 14 11.1673 0.2368 2.9827 23 1 12.2822 0.7331 2.1366 24 1 11.5124 0.4226 4.4151 25 1 10.9437 -1.2058 2.7105 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 2.0698 1.5875 2.1492 32 1 0.5489 2.1253 1.3969 33 1 1.8559 4.0567 2.2384 34 1 1.7097 4.1080 0.4653 35 1 4.1045 3.0328 2.0228 36 1 4.0325 4.5993 1.1814 37 1 5.1607 2.8888 -0.2158 38 1 3.6393 3.4263 -0.9680 39 1 3.7486 0.7915 1.8864 40 1 6.4233 1.7517 -1.5444 41 1 8.0736 1.1457 -1.2660 42 1 6.7622 0.0081 -1.6584 43 1 7.7699 2.4943 0.8844 44 1 6.9147 1.6428 2.1926 45 1 9.9328 2.6108 3.9419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048464616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:48 Heat of formation + Delta-G solvation = -105.041175 kcal Electronic energy + Delta-G solvation = -25277.074158 eV Core-core repulsion = 21841.155170 eV Total energy + Delta-G solvation = -3435.918988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.51033 -36.51304 -35.47453 -35.09611 -33.96868 -33.36125 -32.40788 -29.62093 -28.47517 -27.72737 -25.02673 -23.88855 -22.51554 -22.21043 -20.73397 -19.79007 -18.53449 -17.34830 -16.65377 -16.38812 -15.74055 -15.24360 -15.03644 -14.84223 -14.35263 -14.20232 -13.76141 -13.50191 -13.31112 -13.09756 -12.75656 -12.42245 -12.31106 -12.17273 -12.10501 -11.66928 -11.55696 -11.47044 -11.37742 -11.14351 -11.12542 -11.08011 -11.03910 -10.70501 -10.66729 -10.49121 -10.48495 -10.31122 -10.00454 -9.91794 -9.72749 -9.10046 -8.42767 -8.02414 -6.04664 -4.08073 1.32647 3.32600 3.39122 3.45210 3.59189 4.20887 4.46786 4.57169 4.65232 4.73652 5.04348 5.11474 5.15268 5.23466 5.30614 5.33657 5.36591 5.43751 5.51909 5.58371 5.63033 5.72112 5.72228 5.78453 5.95724 5.96689 5.99937 6.05200 6.10333 6.15584 6.27882 6.29520 6.31229 6.37764 6.47534 6.56353 6.59540 7.18271 7.30949 7.45465 7.66298 7.93523 8.23163 8.94322 9.57131 11.03864 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.004801 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.175104 B = 5830.960780 C = 6341.993149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.087 4.087 4 H 0.078 0.922 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.139 4.139 9 C 0.160 3.840 10 H 0.086 0.914 11 N -1.124 6.124 12 S 2.781 3.219 13 O -0.967 6.967 14 O -1.001 7.001 15 N -0.996 5.996 16 C 0.095 3.905 17 C 0.261 3.739 18 C -0.527 4.527 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.410 0.590 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.038 0.962 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 2.798 -7.450 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.107 4.107 4 H 0.097 0.903 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.179 4.179 9 C 0.053 3.947 10 H 0.104 0.896 11 N -0.883 5.883 12 S 2.789 3.211 13 O -0.951 6.951 14 O -0.984 6.984 15 N -0.838 5.838 16 C -0.052 4.052 17 C 0.139 3.861 18 C -0.567 4.567 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.244 0.756 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.245 1.950 -7.363 17.943 hybrid contribution 0.793 0.088 0.670 1.041 sum -15.453 2.038 -6.694 16.963 Atomic orbital electron populations 1.21822 0.96158 1.01367 1.01573 1.21570 0.95324 0.96226 1.02862 1.21391 0.94349 0.96339 0.98635 0.90322 1.21624 1.00426 0.95803 0.97488 1.21548 0.96253 0.96410 1.01381 1.21454 0.95157 1.00543 0.98368 1.22102 1.02247 0.95387 0.98115 1.20705 0.93149 0.92119 0.88771 0.89622 1.56267 1.47581 1.67083 1.17377 1.01927 0.72507 0.73490 0.73210 1.93641 1.81817 1.78311 1.41304 1.93515 1.85043 1.64180 1.55709 1.57589 1.48118 1.64864 1.13260 1.21360 1.02555 1.00397 0.80903 1.18988 0.90396 0.91525 0.85188 1.21508 1.05897 1.10045 1.19227 0.92203 1.24920 0.98390 0.95100 0.95564 1.69911 1.37641 1.22019 1.23977 0.86530 0.82965 0.80599 0.77552 1.20664 1.21092 1.19728 0.92983 0.93015 0.92644 0.91554 0.91704 0.91852 0.91802 0.92267 0.92290 0.91303 0.92081 0.90446 0.91451 0.75568 0.94311 0.90546 0.91646 0.95094 0.94441 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 37.16 0.36 -0.95 16 2 C -0.12 -1.29 5.17 -26.73 -0.14 -1.43 16 3 C -0.09 -0.88 2.01 -90.62 -0.18 -1.06 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.12 -1.10 4.77 -26.73 -0.13 -1.23 16 6 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 7 C -0.12 -1.37 5.77 -26.73 -0.15 -1.52 16 8 C -0.14 -1.64 5.64 -26.70 -0.15 -1.79 16 9 C 0.16 1.96 2.60 -67.91 -0.18 1.78 16 10 H 0.09 1.07 7.57 -51.93 -0.39 0.68 16 11 N -1.12 -16.52 4.15 -4.87 -0.02 -16.54 16 12 S 2.78 54.58 6.01 -107.50 -0.65 53.93 16 13 O -0.97 -23.34 17.33 -57.17 -0.99 -24.33 16 14 O -1.00 -20.47 16.10 -57.17 -0.92 -21.39 16 15 N -1.00 -20.15 2.88 -123.06 -0.35 -20.51 16 16 C 0.09 1.59 10.57 59.85 0.63 2.22 16 17 C 0.26 6.40 5.08 -5.19 -0.03 6.38 16 18 C -0.53 -14.77 9.38 -34.44 -0.32 -15.09 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 22 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.75 7.76 -51.93 -0.40 0.34 16 31 H 0.06 0.65 6.52 -51.93 -0.34 0.31 16 32 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.92 7.40 -51.93 -0.38 0.54 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.04 6.83 -51.92 -0.35 0.69 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.41 5.56 6.76 -34.47 -0.23 5.32 16 40 H 0.04 0.53 7.25 -51.93 -0.38 0.16 16 41 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 42 H 0.06 1.06 7.00 -51.93 -0.36 0.70 16 43 H 0.03 0.77 8.11 -51.93 -0.42 0.34 16 44 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -32.78 358.06 -10.06 -42.84 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.70 Total: 1.30 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -0.54 Total: -12.31 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.36 Total: -62.40 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.91 Total: -45.72 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 54.58 SS G_CDS: -0.65 Total: 53.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.78 -10.06 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048464616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.198 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds