Wall clock time and date at job start Tue Mar 31 2020 09:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47189 * 2 1 4 4 H 1.09002 * 109.47373 * 305.00264 * 3 2 1 5 5 C 1.52999 * 109.46843 * 64.99984 * 3 2 1 6 6 C 1.53001 * 109.46843 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47317 * 299.99688 * 6 5 3 8 8 C 1.52999 * 109.46622 * 60.00097 * 7 6 5 9 9 C 1.52995 * 109.47061 * 184.99631 * 3 2 1 10 10 H 1.09000 * 109.46890 * 60.00187 * 9 3 2 11 11 N 1.46497 * 109.47338 * 300.00577 * 9 3 2 12 12 S 1.65597 * 120.00342 * 143.05708 * 11 9 3 13 13 O 1.42093 * 106.40483 * 176.09930 * 12 11 9 14 14 O 1.42101 * 106.40000 * 309.01799 * 12 11 9 15 15 N 1.65599 * 107.22288 * 62.55584 * 12 11 9 16 16 C 1.46503 * 120.00263 * 263.79674 * 15 12 11 17 17 C 1.46500 * 119.99745 * 83.78634 * 15 12 11 18 18 C 1.50701 * 109.46689 * 95.38645 * 17 15 12 19 19 H 1.08002 * 119.99961 * 4.75462 * 18 17 15 20 20 C 1.37879 * 119.99796 * 184.75776 * 18 17 15 21 21 N 1.31512 * 120.00444 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99815 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47362 * 89.99978 * 22 20 18 24 24 H 1.48506 * 109.47323 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47345 * 329.99854 * 22 20 18 26 26 H 1.09004 * 109.46981 * 59.99914 * 1 2 3 27 27 H 1.08996 * 109.47213 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47397 * 300.00071 * 1 2 3 29 29 H 1.08992 * 109.46638 * 240.00016 * 2 1 3 30 30 H 1.08994 * 109.46822 * 120.00023 * 2 1 3 31 31 H 1.08994 * 109.47516 * 59.99885 * 5 3 2 32 32 H 1.09002 * 109.47534 * 299.99389 * 5 3 2 33 33 H 1.09010 * 109.47146 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47373 * 60.00280 * 6 5 3 35 35 H 1.08993 * 109.47258 * 300.00550 * 7 6 5 36 36 H 1.08996 * 109.47332 * 180.02562 * 7 6 5 37 37 H 1.09009 * 109.47115 * 180.02562 * 8 7 6 38 38 H 1.09004 * 109.47358 * 60.00172 * 8 7 6 39 39 H 0.97003 * 119.99883 * 323.04284 * 11 9 3 40 40 H 1.08993 * 109.47207 * 89.99588 * 16 15 12 41 41 H 1.09000 * 109.46842 * 210.00126 * 16 15 12 42 42 H 1.08999 * 109.46532 * 329.99180 * 16 15 12 43 43 H 1.08997 * 109.47249 * 215.38549 * 17 15 12 44 44 H 1.08995 * 109.47570 * 335.39055 * 17 15 12 45 45 H 0.96995 * 120.00314 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.1447 3.5692 1.3071 7 6 3.6695 3.5716 1.1811 8 6 4.0743 2.8875 -0.1262 9 6 3.5648 1.4443 -0.1256 10 1 3.8532 0.9570 -1.0570 11 7 4.1489 0.7197 1.0057 12 16 5.4928 -0.2215 0.7814 13 8 5.8615 -0.7071 2.0649 14 8 5.2066 -1.0736 -0.3192 15 7 6.7168 0.7803 0.2911 16 6 7.0129 0.9312 -1.1358 17 6 7.5034 1.5160 1.2842 18 6 8.7583 0.7445 1.6025 19 1 8.9887 -0.1599 1.0590 20 6 9.6122 1.1934 2.5876 21 7 9.3319 2.2949 3.2492 22 14 11.1673 0.2368 2.9827 23 1 12.2822 0.7331 2.1366 24 1 11.5124 0.4226 4.4151 25 1 10.9437 -1.2058 2.7105 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 2.0698 1.5875 2.1492 32 1 0.5489 2.1253 1.3969 33 1 1.8559 4.0567 2.2384 34 1 1.7097 4.1080 0.4653 35 1 4.1045 3.0328 2.0228 36 1 4.0325 4.5993 1.1814 37 1 5.1607 2.8888 -0.2158 38 1 3.6393 3.4263 -0.9680 39 1 3.7486 0.7915 1.8864 40 1 6.4233 1.7517 -1.5444 41 1 8.0736 1.1457 -1.2660 42 1 6.7622 0.0081 -1.6584 43 1 7.7699 2.4943 0.8844 44 1 6.9147 1.6428 2.1926 45 1 9.9328 2.6108 3.9419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048464616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:47 Heat of formation + Delta-G solvation = -126.953083 kcal Electronic energy + Delta-G solvation = -25278.024330 eV Core-core repulsion = 21841.155170 eV Total energy + Delta-G solvation = -3436.869160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43365 -38.21319 -37.20069 -36.81756 -34.83221 -34.47999 -34.42165 -30.54451 -29.63960 -29.34507 -26.75408 -24.69771 -24.19016 -23.35366 -21.61522 -20.90534 -19.81449 -18.97957 -18.38300 -18.22545 -17.18465 -16.68118 -16.19888 -16.03901 -15.72633 -15.28668 -15.05151 -14.84992 -14.53535 -14.15425 -14.01058 -13.93532 -13.64600 -13.39424 -13.33043 -13.14923 -13.05245 -12.94715 -12.90495 -12.67083 -12.47305 -12.35317 -12.27594 -12.23227 -12.00213 -11.88101 -11.74228 -11.53377 -11.31977 -11.24271 -10.77600 -10.58740 -10.21867 -9.74957 -8.19803 -6.30946 -0.24881 1.37834 1.40446 1.50817 2.08718 2.40789 2.69294 3.11310 3.52486 3.68533 3.84565 3.87243 4.13377 4.22617 4.28349 4.37580 4.45105 4.54936 4.61631 4.68178 4.72274 4.73029 4.81561 4.84435 4.91697 4.96870 5.06789 5.14897 5.19305 5.23142 5.23759 5.27978 5.35258 5.42197 5.44294 5.48557 5.51675 5.61501 5.69212 5.71469 5.91056 6.11614 6.21669 6.77268 7.37791 8.87470 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.004801 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.175104 B = 5830.960780 C = 6341.993149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.079 4.079 4 H 0.103 0.897 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.137 4.137 9 C 0.152 3.848 10 H 0.086 0.914 11 N -1.109 6.109 12 S 2.796 3.204 13 O -1.018 7.018 14 O -1.009 7.009 15 N -1.000 6.000 16 C 0.088 3.912 17 C 0.280 3.720 18 C -0.549 4.549 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.954 3.046 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.276 1.276 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.416 0.584 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.027 0.973 44 H 0.015 0.985 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 3.525 -8.646 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.099 4.099 4 H 0.121 0.879 5 C -0.153 4.153 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.176 4.176 9 C 0.046 3.954 10 H 0.104 0.896 11 N -0.872 5.872 12 S 2.804 3.196 13 O -1.002 7.002 14 O -0.993 6.993 15 N -0.842 5.842 16 C -0.057 4.057 17 C 0.156 3.844 18 C -0.588 4.588 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.563 5.563 22 Si 0.779 3.221 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.201 1.201 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.252 0.748 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.033 0.967 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.593 2.675 -8.585 19.758 hybrid contribution 1.138 -0.123 0.991 1.514 sum -16.455 2.552 -7.594 18.302 Atomic orbital electron populations 1.21788 0.94403 1.01737 1.02560 1.21589 0.96914 0.96275 1.01582 1.21381 0.92266 0.96398 0.99887 0.87922 1.21640 1.01514 0.95505 0.96641 1.21506 0.94358 0.96641 1.02415 1.21464 0.96904 1.00079 0.97366 1.22092 1.01138 0.95210 0.99191 1.21026 0.94863 0.92046 0.87508 0.89627 1.55852 1.45835 1.66809 1.18732 1.01223 0.72906 0.73555 0.71905 1.93566 1.83071 1.79844 1.43694 1.93497 1.85249 1.64817 1.55699 1.57438 1.48394 1.64301 1.14053 1.21580 1.02964 1.02143 0.79030 1.18509 0.89340 0.91250 0.85312 1.21866 1.07424 1.10053 1.19476 0.93141 1.25705 1.01397 0.96029 0.95490 1.69998 1.38778 1.23134 1.24413 0.85626 0.79798 0.78933 0.77778 1.18976 1.20426 1.20117 0.91702 0.93076 0.91873 0.92571 0.93359 0.93115 0.89919 0.91866 0.90458 0.93890 0.92086 0.92484 0.88676 0.74761 0.90839 0.91157 0.90951 0.95501 0.96707 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 71.98 0.70 -1.48 16 2 C -0.13 -2.44 5.17 30.59 0.16 -2.29 16 3 C -0.08 -1.40 2.01 -10.80 -0.02 -1.42 16 4 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 5 C -0.12 -1.92 4.77 30.59 0.15 -1.77 16 6 C -0.11 -1.86 5.92 30.60 0.18 -1.68 16 7 C -0.12 -2.67 5.77 30.59 0.18 -2.49 16 8 C -0.14 -2.98 5.64 30.61 0.17 -2.81 16 9 C 0.15 3.49 2.60 45.01 0.12 3.61 16 10 H 0.09 1.99 7.57 -2.39 -0.02 1.98 16 11 N -1.11 -32.67 4.15 -169.33 -0.70 -33.37 16 12 S 2.80 111.68 6.01 -56.49 -0.34 111.34 16 13 O -1.02 -50.93 17.33 -128.00 -2.22 -53.14 16 14 O -1.01 -41.20 16.10 -128.00 -2.06 -43.26 16 15 N -1.00 -40.99 2.88 -543.24 -1.57 -42.56 16 16 C 0.09 2.91 10.57 127.77 1.35 4.26 16 17 C 0.28 14.09 5.08 85.63 0.43 14.52 16 18 C -0.55 -31.36 9.38 25.60 0.24 -31.12 16 19 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 20 C 0.01 0.76 5.46 84.66 0.46 1.22 16 21 N -0.92 -54.43 13.29 21.45 0.28 -54.14 16 22 Si 0.95 45.20 29.54 68.60 2.03 47.23 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.83 6.57 -2.39 -0.02 0.82 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.08 7.76 -2.39 -0.02 1.06 16 31 H 0.05 0.97 6.52 -2.39 -0.02 0.96 16 32 H 0.08 1.11 6.57 -2.39 -0.02 1.09 16 33 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.04 1.16 7.40 -2.39 -0.02 1.14 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.48 6.83 -2.38 -0.02 1.47 16 38 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.42 11.51 6.76 -96.74 -0.65 10.86 16 40 H 0.07 1.90 7.25 -2.39 -0.02 1.88 16 41 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 42 H 0.07 2.28 7.00 -2.39 -0.02 2.26 16 43 H 0.03 1.36 8.11 -2.39 -0.02 1.34 16 44 H 0.01 0.81 7.77 -2.39 -0.02 0.79 16 45 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -70.99 358.06 -0.15 -71.14 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.31 Total: 18.21 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 4.11 Total: -21.44 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -1.98 Total: -130.08 kcal Atomic # 8 Polarization: -92.13 SS G_CDS: -4.28 Total: -96.41 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 111.68 SS G_CDS: -0.34 Total: 111.34 kcal Total: -70.99 -0.15 -71.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048464616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.810 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds