Wall clock time and date at job start Tue Mar 31 2020 09:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47247 * 2 1 4 4 C 1.53000 * 109.46927 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46980 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00219 * 90.00008 * 5 4 3 7 7 C 1.50695 * 109.46909 * 78.59718 * 6 5 4 8 8 N 1.34783 * 120.00199 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00264 * 359.97438 * 7 6 5 10 10 C 1.34778 * 120.00065 * 270.00055 * 5 4 3 11 11 O 1.21550 * 119.99974 * 1.62278 * 10 5 4 12 12 C 1.47889 * 120.00370 * 181.62003 * 10 5 4 13 13 C 1.39917 * 120.01952 * 23.45866 * 12 10 5 14 14 C 1.38337 * 120.35293 * 179.74320 * 13 12 10 15 15 C 1.37755 * 120.41110 * 0.56370 * 14 13 12 16 16 C 1.40749 * 120.04029 * 359.69194 * 15 14 13 17 17 C 1.41439 * 120.17990 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99186 * 29.67657 * 17 16 15 19 19 C 1.39933 * 120.00364 * 209.67467 * 17 16 15 20 20 N 1.30831 * 119.99721 * 10.82533 * 19 17 16 21 21 Si 1.86797 * 120.00101 * 190.82170 * 19 17 16 22 22 H 1.48501 * 109.46957 * 60.00337 * 21 19 17 23 23 H 1.48501 * 109.47213 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47182 * 300.00330 * 21 19 17 25 25 C 1.38994 * 120.02628 * 203.74148 * 12 10 5 26 26 H 1.09003 * 109.47591 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46869 * 299.99896 * 1 2 3 28 28 H 1.08997 * 109.47152 * 59.98992 * 1 2 3 29 29 H 1.09001 * 109.46423 * 240.00259 * 2 1 3 30 30 H 1.08997 * 109.47152 * 120.01008 * 2 1 3 31 31 H 1.09011 * 109.46747 * 60.00494 * 3 2 1 32 32 H 1.08997 * 109.47359 * 300.00434 * 3 2 1 33 33 H 1.08994 * 109.47002 * 60.00562 * 4 3 2 34 34 H 1.08997 * 109.47314 * 300.00287 * 4 3 2 35 35 H 1.08991 * 109.47261 * 318.59578 * 6 5 4 36 36 H 1.08998 * 109.47117 * 198.59290 * 6 5 4 37 37 H 0.97006 * 119.99417 * 359.97438 * 8 7 6 38 38 H 0.96999 * 120.00073 * 179.97438 * 8 7 6 39 39 H 1.07995 * 119.82648 * 0.02562 * 13 12 10 40 40 H 1.08000 * 119.79175 * 180.27960 * 14 13 12 41 41 H 1.07996 * 119.97941 * 179.72088 * 15 14 13 42 42 H 0.97003 * 119.99525 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.20093 * 359.94659 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3032 3.5135 1.2690 7 6 5.6191 3.0563 1.8436 8 7 6.0539 3.5596 3.0159 9 8 6.2866 2.2347 1.2517 10 6 4.2826 3.4596 -1.1669 11 8 4.0515 2.8975 -2.2196 12 6 4.8096 4.8414 -1.1667 13 6 5.5248 5.3176 -0.0624 14 6 6.0254 6.6072 -0.0570 15 6 5.8158 7.4411 -1.1333 16 6 5.0941 6.9814 -2.2508 17 6 4.8776 7.8349 -3.3577 18 1 5.5983 8.6031 -3.5962 19 6 3.7297 7.6839 -4.1437 20 7 2.7587 6.9052 -3.7406 21 14 3.5838 8.5944 -5.7682 22 1 4.6912 8.1823 -6.6677 23 1 2.2819 8.2678 -6.4035 24 1 3.6621 10.0571 -5.5247 25 6 4.5896 5.6699 -2.2608 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9283 0.8890 35 1 3.5008 3.2816 1.9692 36 1 4.3359 4.5893 1.0972 37 1 5.5198 4.2164 3.4895 38 1 6.9008 3.2650 3.3859 39 1 5.6909 4.6735 0.7883 40 1 6.5801 6.9639 0.7982 41 1 6.2059 8.4480 -1.1198 42 1 1.9632 6.8003 -4.2857 43 1 4.0349 5.3077 -3.1137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049744179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:07 Heat of formation + Delta-G solvation = -39.269163 kcal Electronic energy + Delta-G solvation = -25239.318165 eV Core-core repulsion = 21670.807314 eV Total energy + Delta-G solvation = -3568.510851 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39404 -38.61996 -37.20960 -35.77086 -34.40916 -33.64304 -33.55055 -30.73606 -29.53704 -28.97511 -27.33801 -25.40154 -23.97694 -21.75669 -21.14678 -21.09980 -20.75420 -18.90453 -17.78862 -17.12388 -16.79540 -16.21568 -15.83807 -15.35927 -15.18291 -14.92369 -14.56544 -14.10188 -13.68538 -13.47490 -13.42306 -13.04840 -12.80198 -12.78585 -12.49840 -12.36330 -11.98870 -11.54146 -11.34155 -11.16177 -11.13946 -11.09824 -11.02593 -10.54222 -10.44891 -10.37968 -10.10714 -10.03007 -9.69346 -9.63842 -9.27497 -8.95818 -8.32417 -7.65599 -7.49442 -6.78825 -4.47014 2.18158 2.63980 2.80254 3.06789 3.08523 3.12407 3.22614 3.59079 3.89734 3.93094 4.59572 4.90399 4.95019 5.01738 5.15773 5.19548 5.25561 5.46178 5.55753 5.63462 5.71264 5.77584 5.82383 5.87277 6.00831 6.05136 6.17442 6.17888 6.34793 6.44442 6.63346 6.77111 6.85744 6.95101 6.99344 7.17862 7.29478 7.33867 7.60019 7.70474 7.82754 7.97096 8.13146 8.30810 8.46440 8.77885 8.78569 8.88891 10.16119 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.004759 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.589832 B = 5881.989837 C = 7661.117073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.136 4.136 4 C 0.123 3.877 5 N -0.595 5.595 6 C 0.057 3.943 7 C 0.500 3.500 8 N -0.858 5.858 9 O -0.530 6.530 10 C 0.571 3.429 11 O -0.538 6.538 12 C -0.125 4.125 13 C -0.244 4.244 14 C -0.097 4.097 15 C -0.207 4.207 16 C 0.103 3.897 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.072 3.928 20 N -0.795 5.795 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.086 4.086 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.158 0.842 37 H 0.401 0.599 38 H 0.399 0.601 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.284 0.716 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -5.964 12.581 14.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.001 3.999 5 N -0.327 5.327 6 C -0.070 4.070 7 C 0.284 3.716 8 N -0.424 5.424 9 O -0.405 6.405 10 C 0.364 3.636 11 O -0.416 6.416 12 C -0.128 4.128 13 C -0.263 4.263 14 C -0.116 4.116 15 C -0.227 4.227 16 C 0.100 3.900 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.420 5.420 21 Si 0.738 3.262 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.106 4.106 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.175 0.825 37 H 0.230 0.770 38 H 0.230 0.770 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.432 -6.907 11.368 13.522 hybrid contribution 0.017 0.638 -0.061 0.641 sum -2.414 -6.269 11.307 13.153 Atomic orbital electron populations 1.21756 0.95884 1.01249 1.01912 1.21436 0.95835 0.96655 1.01933 1.22011 0.95905 0.96872 1.02721 1.21356 0.93101 0.82521 1.02959 1.47322 1.66694 1.13910 1.04813 1.22514 0.93771 1.03432 0.87287 1.21295 0.88793 0.81000 0.80545 1.43891 1.26433 1.47612 1.24417 1.90762 1.57560 1.32842 1.59338 1.18874 0.75833 0.86574 0.82364 1.90686 1.52175 1.67980 1.30717 1.19476 1.03684 0.92236 0.97414 1.21126 1.08670 0.97327 0.99173 1.20466 0.99377 0.94122 0.97586 1.21176 1.08377 0.98616 0.94537 1.17609 0.89524 0.91188 0.91657 1.19562 1.05142 1.15042 1.09250 0.90135 1.25928 0.94943 0.94640 0.99031 1.69740 1.05219 1.30512 1.36552 0.86268 0.78454 0.80195 0.81254 1.18758 1.20230 1.18992 1.21615 1.00134 0.92325 0.96502 0.92990 0.92909 0.92592 0.91800 0.92243 0.92159 0.91076 0.89973 0.91314 0.88936 0.82547 0.77035 0.77026 0.87289 0.88854 0.88496 0.90501 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C -0.14 -1.86 5.54 -26.73 -0.15 -2.01 16 4 C 0.12 1.95 5.09 -4.04 -0.02 1.93 16 5 N -0.60 -10.78 2.06 -176.17 -0.36 -11.14 16 6 C 0.06 0.81 5.36 -5.20 -0.03 0.78 16 7 C 0.50 7.15 5.96 -10.99 -0.07 7.08 16 8 N -0.86 -7.90 8.87 31.22 0.28 -7.63 16 9 O -0.53 -10.07 17.00 5.56 0.09 -9.97 16 10 C 0.57 13.11 7.52 -12.31 -0.09 13.02 16 11 O -0.54 -13.93 16.17 5.32 0.09 -13.84 16 12 C -0.12 -2.98 5.60 -105.04 -0.59 -3.57 16 13 C -0.24 -5.06 7.52 -38.92 -0.29 -5.35 16 14 C -0.10 -2.00 10.01 -39.72 -0.40 -2.40 16 15 C -0.21 -4.80 9.78 -38.81 -0.38 -5.18 16 16 C 0.10 2.68 5.54 -106.87 -0.59 2.09 16 17 C -0.46 -11.98 9.06 -37.73 -0.34 -12.33 16 18 H 0.08 1.99 7.87 -52.48 -0.41 1.57 16 19 C 0.07 1.81 5.24 -17.34 -0.09 1.72 16 20 N -0.80 -20.74 10.91 55.55 0.61 -20.13 16 21 Si 0.91 18.74 29.57 -169.99 -5.03 13.71 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.09 -2.28 8.19 -38.44 -0.31 -2.59 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.46 7.44 -51.93 -0.39 1.08 16 34 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.16 2.37 4.17 -51.97 -0.22 2.16 16 37 H 0.40 2.38 8.83 -40.82 -0.36 2.02 16 38 H 0.40 3.25 8.93 -40.82 -0.36 2.89 16 39 H 0.11 1.93 2.71 -52.49 -0.14 1.79 16 40 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 43 H 0.13 3.82 6.06 -52.49 -0.32 3.50 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -32.82 355.71 -8.09 -40.90 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.98 Total: 12.19 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -3.14 Total: -9.45 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.52 Total: -38.90 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.18 Total: -23.81 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.82 -8.09 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049744179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.633 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds