Wall clock time and date at job start Tue Mar 31 2020 09:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47247 * 2 1 4 4 C 1.53000 * 109.46927 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46980 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00219 * 90.00008 * 5 4 3 7 7 C 1.50695 * 109.46909 * 78.59718 * 6 5 4 8 8 N 1.34783 * 120.00199 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00264 * 359.97438 * 7 6 5 10 10 C 1.34778 * 120.00065 * 270.00055 * 5 4 3 11 11 O 1.21550 * 119.99974 * 1.62278 * 10 5 4 12 12 C 1.47889 * 120.00370 * 181.62003 * 10 5 4 13 13 C 1.39917 * 120.01952 * 23.45866 * 12 10 5 14 14 C 1.38337 * 120.35293 * 179.74320 * 13 12 10 15 15 C 1.37755 * 120.41110 * 0.56370 * 14 13 12 16 16 C 1.40749 * 120.04029 * 359.69194 * 15 14 13 17 17 C 1.41439 * 120.17990 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99186 * 29.67657 * 17 16 15 19 19 C 1.39933 * 120.00364 * 209.67467 * 17 16 15 20 20 N 1.30831 * 119.99721 * 10.82533 * 19 17 16 21 21 Si 1.86797 * 120.00101 * 190.82170 * 19 17 16 22 22 H 1.48501 * 109.46957 * 60.00337 * 21 19 17 23 23 H 1.48501 * 109.47213 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47182 * 300.00330 * 21 19 17 25 25 C 1.38994 * 120.02628 * 203.74148 * 12 10 5 26 26 H 1.09003 * 109.47591 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46869 * 299.99896 * 1 2 3 28 28 H 1.08997 * 109.47152 * 59.98992 * 1 2 3 29 29 H 1.09001 * 109.46423 * 240.00259 * 2 1 3 30 30 H 1.08997 * 109.47152 * 120.01008 * 2 1 3 31 31 H 1.09011 * 109.46747 * 60.00494 * 3 2 1 32 32 H 1.08997 * 109.47359 * 300.00434 * 3 2 1 33 33 H 1.08994 * 109.47002 * 60.00562 * 4 3 2 34 34 H 1.08997 * 109.47314 * 300.00287 * 4 3 2 35 35 H 1.08991 * 109.47261 * 318.59578 * 6 5 4 36 36 H 1.08998 * 109.47117 * 198.59290 * 6 5 4 37 37 H 0.97006 * 119.99417 * 359.97438 * 8 7 6 38 38 H 0.96999 * 120.00073 * 179.97438 * 8 7 6 39 39 H 1.07995 * 119.82648 * 0.02562 * 13 12 10 40 40 H 1.08000 * 119.79175 * 180.27960 * 14 13 12 41 41 H 1.07996 * 119.97941 * 179.72088 * 15 14 13 42 42 H 0.97003 * 119.99525 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.20093 * 359.94659 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3032 3.5135 1.2690 7 6 5.6191 3.0563 1.8436 8 7 6.0539 3.5596 3.0159 9 8 6.2866 2.2347 1.2517 10 6 4.2826 3.4596 -1.1669 11 8 4.0515 2.8975 -2.2196 12 6 4.8096 4.8414 -1.1667 13 6 5.5248 5.3176 -0.0624 14 6 6.0254 6.6072 -0.0570 15 6 5.8158 7.4411 -1.1333 16 6 5.0941 6.9814 -2.2508 17 6 4.8776 7.8349 -3.3577 18 1 5.5983 8.6031 -3.5962 19 6 3.7297 7.6839 -4.1437 20 7 2.7587 6.9052 -3.7406 21 14 3.5838 8.5944 -5.7682 22 1 4.6912 8.1823 -6.6677 23 1 2.2819 8.2678 -6.4035 24 1 3.6621 10.0571 -5.5247 25 6 4.5896 5.6699 -2.2608 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9283 0.8890 35 1 3.5008 3.2816 1.9692 36 1 4.3359 4.5893 1.0972 37 1 5.5198 4.2164 3.4895 38 1 6.9008 3.2650 3.3859 39 1 5.6909 4.6735 0.7883 40 1 6.5801 6.9639 0.7982 41 1 6.2059 8.4480 -1.1198 42 1 1.9632 6.8003 -4.2857 43 1 4.0349 5.3077 -3.1137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049744179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:06 Heat of formation + Delta-G solvation = -61.966905 kcal Electronic energy + Delta-G solvation = -25240.302413 eV Core-core repulsion = 21670.807314 eV Total energy + Delta-G solvation = -3569.495099 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.85009 -40.04333 -38.96882 -37.17442 -35.89544 -35.17683 -34.64579 -32.34758 -31.35781 -30.29789 -28.64842 -27.24204 -25.34295 -23.22772 -22.90729 -22.22477 -22.00184 -20.43556 -19.42707 -18.33285 -17.98968 -17.80595 -17.32766 -16.95198 -16.70909 -16.17828 -15.96205 -15.60248 -15.17164 -15.06106 -14.59252 -14.58236 -14.44901 -14.20612 -13.87615 -13.69051 -13.41368 -13.17261 -12.88886 -12.82924 -12.40926 -12.32311 -12.19098 -12.01027 -12.00032 -11.91989 -11.49828 -11.42314 -11.33498 -11.10728 -10.71042 -10.62844 -9.81022 -9.45106 -9.34345 -8.63603 -6.42140 0.35811 0.95734 1.36472 1.45295 1.49120 1.56645 1.86963 1.96736 2.19447 2.63942 2.79381 3.56704 3.65490 3.89985 3.98873 4.06348 4.12798 4.21090 4.31917 4.39421 4.43721 4.50678 4.57249 4.72758 4.81184 4.90538 4.91524 5.03958 5.06090 5.14817 5.22937 5.28092 5.33801 5.41875 5.47338 5.54663 5.78281 5.88394 5.92784 6.02040 6.20381 6.28348 6.48771 6.58813 6.87066 6.91644 7.16133 7.36289 8.33038 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.004759 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.589832 B = 5881.989837 C = 7661.117073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.127 4.127 4 C 0.122 3.878 5 N -0.587 5.587 6 C 0.047 3.953 7 C 0.500 3.500 8 N -0.828 5.828 9 O -0.582 6.582 10 C 0.560 3.440 11 O -0.586 6.586 12 C -0.138 4.138 13 C -0.223 4.223 14 C -0.091 4.091 15 C -0.209 4.209 16 C 0.072 3.928 17 C -0.498 4.498 18 H 0.085 0.915 19 C 0.029 3.971 20 N -0.834 5.834 21 Si 0.984 3.016 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.251 1.251 25 C -0.123 4.123 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.422 0.578 38 H 0.410 0.590 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.113 0.887 42 H 0.285 0.715 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -5.667 16.224 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.000 4.000 5 N -0.317 5.317 6 C -0.078 4.078 7 C 0.283 3.717 8 N -0.394 5.394 9 O -0.461 6.461 10 C 0.352 3.648 11 O -0.468 6.468 12 C -0.141 4.141 13 C -0.242 4.242 14 C -0.109 4.109 15 C -0.229 4.229 16 C 0.070 3.930 17 C -0.528 4.528 18 H 0.103 0.897 19 C -0.185 4.185 20 N -0.460 5.460 21 Si 0.804 3.196 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.143 4.143 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.254 0.746 38 H 0.242 0.758 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.032 -6.579 15.131 16.624 hybrid contribution -0.038 0.463 -0.922 1.032 sum -2.070 -6.116 14.210 15.608 Atomic orbital electron populations 1.21746 0.94842 1.02281 1.01772 1.21430 0.96700 0.94850 1.02534 1.21933 0.94124 0.98567 1.01964 1.21517 0.94521 0.81146 1.02776 1.47330 1.64983 1.14558 1.04798 1.22758 0.96081 1.02573 0.86405 1.21177 0.88207 0.80738 0.81535 1.43627 1.26711 1.46581 1.22462 1.90772 1.58742 1.35365 1.61219 1.18946 0.75989 0.86606 0.83304 1.90646 1.54374 1.68907 1.32829 1.19747 1.04004 0.92595 0.97733 1.21600 1.05932 0.97939 0.98719 1.20969 0.98409 0.93335 0.98163 1.21495 1.07212 0.99852 0.94323 1.17938 0.90763 0.91136 0.93165 1.19857 1.06102 1.16044 1.10803 0.89724 1.26809 0.94205 0.95255 1.02246 1.69853 1.05863 1.32313 1.38010 0.85221 0.78333 0.79440 0.76569 1.18805 1.19695 1.17453 1.21380 1.02437 0.93593 0.96927 0.91394 0.91731 0.94076 0.92938 0.89914 0.89870 0.94747 0.92947 0.88575 0.83828 0.83209 0.74597 0.75753 0.83685 0.83784 0.86845 0.90433 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.91 71.98 0.71 -2.06 16 2 C -0.12 -2.47 5.93 30.59 0.18 -2.29 16 3 C -0.13 -3.39 5.54 30.59 0.17 -3.22 16 4 C 0.12 3.81 5.09 86.38 0.44 4.25 16 5 N -0.59 -20.93 2.06 -829.55 -1.71 -22.64 16 6 C 0.05 1.19 5.36 85.63 0.46 1.65 16 7 C 0.50 12.45 5.96 87.65 0.52 12.98 16 8 N -0.83 -11.12 8.87 -173.53 -1.54 -12.66 16 9 O -0.58 -20.83 17.00 -3.02 -0.05 -20.88 16 10 C 0.56 26.72 7.52 86.80 0.65 27.37 16 11 O -0.59 -32.66 16.17 -3.87 -0.06 -32.72 16 12 C -0.14 -6.74 5.60 -20.13 -0.11 -6.86 16 13 C -0.22 -8.83 7.52 22.70 0.17 -8.66 16 14 C -0.09 -3.47 10.01 22.18 0.22 -3.25 16 15 C -0.21 -9.51 9.78 22.77 0.22 -9.29 16 16 C 0.07 3.91 5.54 -21.32 -0.12 3.79 16 17 C -0.50 -27.09 9.06 23.47 0.21 -26.87 16 18 H 0.08 4.32 7.87 -2.91 -0.02 4.30 16 19 C 0.03 1.50 5.24 85.25 0.45 1.94 16 20 N -0.83 -46.37 10.91 21.82 0.24 -46.13 16 21 Si 0.98 39.82 29.57 68.60 2.03 41.85 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 25 C -0.12 -6.93 8.19 23.01 0.19 -6.74 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.95 7.44 -2.39 -0.02 1.93 16 34 H 0.10 2.48 8.00 -2.39 -0.02 2.46 16 35 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.15 4.03 4.17 -2.43 -0.01 4.02 16 37 H 0.42 2.51 8.83 -92.70 -0.82 1.70 16 38 H 0.41 4.72 8.93 -92.71 -0.83 3.90 16 39 H 0.15 4.64 2.71 -2.91 -0.01 4.63 16 40 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 43 H 0.09 5.96 6.06 -2.91 -0.02 5.94 16 Total: -1.00 -79.52 355.71 2.69 -76.83 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.59 Total: 33.61 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.37 Total: -17.25 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -3.01 Total: -81.43 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.11 Total: -53.60 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -79.52 2.69 -76.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049744179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.863 kcal (2) G-P(sol) polarization free energy of solvation -79.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds