Wall clock time and date at job start Tue Mar 31 2020 08:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47022 * 2 1 4 4 C 1.53001 * 109.47306 * 120.00198 * 2 1 3 5 5 C 1.50695 * 109.47046 * 174.99915 * 4 2 1 6 6 O 1.21276 * 120.00241 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99779 * 179.97438 * 5 4 2 8 8 C 1.46494 * 120.00188 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47081 * 325.00162 * 8 7 5 10 10 C 1.50705 * 109.47219 * 204.99927 * 8 7 5 11 11 O 1.21289 * 120.00128 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99810 * 179.97438 * 10 8 7 13 13 C 1.37093 * 119.99958 * 180.02562 * 12 10 8 14 14 H 1.08005 * 119.99959 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00468 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99703 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00288 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47478 * 59.99843 * 17 15 13 19 19 H 1.48504 * 109.47296 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47154 * 299.99639 * 17 15 13 21 21 C 1.50703 * 109.47581 * 84.99858 * 8 7 5 22 22 C 1.38235 * 120.00292 * 220.00303 * 21 8 7 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 8 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 39.97596 * 21 8 7 27 27 H 1.09005 * 109.47186 * 300.00048 * 1 2 3 28 28 H 1.09003 * 109.47731 * 59.99946 * 1 2 3 29 29 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47186 * 239.99952 * 2 1 3 31 31 H 1.09002 * 109.46848 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47173 * 299.99672 * 3 2 1 33 33 H 1.08995 * 109.47025 * 60.00497 * 3 2 1 34 34 H 1.08999 * 109.46852 * 54.99637 * 4 2 1 35 35 H 1.09005 * 109.46784 * 295.00208 * 4 2 1 36 36 H 0.97005 * 119.99889 * 359.97438 * 7 5 4 37 37 H 0.97003 * 120.00248 * 0.02562 * 12 10 8 38 38 H 0.96994 * 120.00009 * 180.02562 * 16 15 13 39 39 H 1.08001 * 119.99730 * 359.97438 * 22 21 8 40 40 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 42 42 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00455 * 0.02562 * 26 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.8294 1.1888 6 8 4.1449 -0.3748 0.2398 7 7 4.2149 -1.4313 2.1894 8 6 5.6749 -1.5360 2.1310 9 1 5.9878 -1.6797 1.0968 10 6 6.1280 -2.7097 2.9607 11 8 5.3116 -3.3919 3.5430 12 7 7.4404 -3.0018 3.0547 13 6 7.8526 -4.0698 3.8090 14 1 7.1257 -4.6768 4.3282 15 6 9.2056 -4.3708 3.9064 16 7 10.0902 -3.6319 3.2750 17 14 9.7672 -5.8255 4.9347 18 1 9.1600 -7.0718 4.4026 19 1 11.2472 -5.9320 4.8750 20 1 9.3410 -5.6297 6.3437 21 6 6.2913 -0.2713 2.6711 22 6 7.4044 0.2720 2.0573 23 6 7.9694 1.4323 2.5525 24 6 7.4209 2.0499 3.6609 25 6 6.3069 1.5074 4.2738 26 6 5.7432 0.3457 3.7800 27 1 -0.3634 0.5139 0.8900 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6053 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 3.7326 -1.7946 2.9486 37 1 8.0933 -2.4564 2.5886 38 1 11.0346 -3.8422 3.3427 39 1 7.8326 -0.2101 1.1909 40 1 8.8393 1.8567 2.0732 41 1 7.8649 2.9540 4.0504 42 1 5.8786 1.9896 5.1401 43 1 4.8736 -0.0787 4.2596 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066645127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:45 Heat of formation + Delta-G solvation = -66.840862 kcal Electronic energy + Delta-G solvation = -25061.598771 eV Core-core repulsion = 21491.892322 eV Total energy + Delta-G solvation = -3569.706449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.17661 -38.83809 -37.89625 -35.68471 -34.50174 -33.83906 -31.74065 -30.86039 -30.55137 -28.46629 -27.12625 -26.52746 -24.46702 -22.35460 -21.64899 -20.72969 -19.73320 -19.33622 -18.12041 -17.16090 -16.83248 -15.94230 -15.50660 -15.33757 -15.04586 -14.63478 -14.45284 -14.08720 -14.00279 -13.77760 -13.51405 -13.31174 -13.07969 -12.75354 -12.34252 -12.27628 -12.20936 -11.95277 -11.78417 -11.62782 -11.15519 -11.13102 -10.96842 -10.83558 -10.73934 -10.71128 -10.50748 -10.30949 -9.62093 -9.52895 -9.15921 -8.70973 -8.57295 -8.16576 -8.07954 -6.51074 -3.92599 1.63445 1.73577 2.87889 3.13477 3.21176 3.23872 3.38361 3.71545 4.05285 4.17474 4.72853 4.83656 4.88418 4.96628 5.04999 5.15024 5.23829 5.28267 5.32785 5.41799 5.46129 5.55564 5.59802 5.65662 5.72092 5.83113 5.84468 5.92398 5.95282 6.07008 6.10465 6.24635 6.32385 6.33560 6.44373 6.67031 6.74730 6.79276 6.95179 7.29519 7.45765 7.82396 7.91999 8.44454 8.51121 9.04361 9.39572 9.87396 10.65475 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.004188 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.113077 B = 6684.687334 C = 7883.079924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.514 3.486 6 O -0.541 6.541 7 N -0.702 5.702 8 C 0.174 3.826 9 H 0.106 0.894 10 C 0.435 3.565 11 O -0.593 6.593 12 N -0.542 5.542 13 C -0.305 4.305 14 H 0.105 0.895 15 C 0.028 3.972 16 N -0.892 5.892 17 Si 0.933 3.067 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.080 4.080 22 C -0.099 4.099 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.100 4.100 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.409 0.591 37 H 0.395 0.605 38 H 0.275 0.725 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.975 10.610 -2.838 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.300 3.700 6 O -0.418 6.418 7 N -0.355 5.355 8 C 0.065 3.935 9 H 0.124 0.876 10 C 0.219 3.781 11 O -0.480 6.480 12 N -0.176 5.176 13 C -0.435 4.435 14 H 0.123 0.877 15 C -0.176 4.176 16 N -0.532 5.532 17 Si 0.759 3.241 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.082 4.082 22 C -0.118 4.118 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.118 4.118 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.245 0.755 37 H 0.229 0.771 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.849 10.434 -3.135 15.375 hybrid contribution 0.627 -0.601 0.694 1.112 sum -10.222 9.834 -2.441 14.392 Atomic orbital electron populations 1.21864 0.95188 1.01648 1.01771 1.20849 0.94796 0.96919 0.97322 1.21956 1.03429 0.94933 1.00680 1.21758 0.92086 1.03019 1.00762 1.20662 0.90037 0.77295 0.81965 1.90643 1.70369 1.47502 1.33310 1.45713 1.06350 1.59128 1.24264 1.19530 0.80968 0.91991 1.00992 0.87628 1.19493 0.83995 0.87287 0.87280 1.90502 1.52697 1.53539 1.51213 1.41760 1.05078 1.27552 1.43160 1.19687 0.92133 1.06112 1.25544 0.87720 1.25317 0.95532 0.98992 0.97727 1.69609 1.02516 1.39031 1.42008 0.85886 0.77350 0.80834 0.79992 1.19751 1.20831 1.19768 1.19974 0.96257 0.95860 0.96064 1.20997 0.95331 0.95755 0.99696 1.21047 0.99717 0.95886 0.96825 1.21067 0.96628 1.00060 0.96498 1.21031 0.96839 0.96418 0.99893 1.20861 0.99892 0.95430 0.95628 0.92737 0.92556 0.92705 0.90431 0.90469 0.93219 0.93525 0.88872 0.89044 0.75457 0.77066 0.91534 0.85859 0.86148 0.86521 0.86473 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 37.15 0.34 -0.90 16 2 C -0.08 -0.87 2.57 -90.62 -0.23 -1.10 16 3 C -0.15 -1.75 8.93 37.16 0.33 -1.42 16 4 C -0.14 -1.52 5.17 -27.88 -0.14 -1.66 16 5 C 0.51 7.86 7.50 -10.99 -0.08 7.78 16 6 O -0.54 -9.78 13.63 5.56 0.08 -9.71 16 7 N -0.70 -11.51 4.19 -56.07 -0.23 -11.74 16 8 C 0.17 3.31 2.58 -70.23 -0.18 3.13 16 9 H 0.11 2.05 7.44 -51.93 -0.39 1.66 16 10 C 0.43 10.11 7.15 -10.98 -0.08 10.03 16 11 O -0.59 -15.19 15.41 5.55 0.09 -15.11 16 12 N -0.54 -13.61 5.19 -10.96 -0.06 -13.67 16 13 C -0.31 -8.34 9.68 -14.93 -0.14 -8.48 16 14 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16 15 C 0.03 0.72 5.50 -17.47 -0.10 0.63 16 16 N -0.89 -23.82 13.05 55.50 0.72 -23.10 16 17 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 21 C -0.08 -1.43 4.70 -104.62 -0.49 -1.92 16 22 C -0.10 -1.69 9.51 -39.59 -0.38 -2.06 16 23 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 24 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 25 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.10 -1.66 9.32 -39.58 -0.37 -2.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 31 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.41 6.38 7.79 -40.82 -0.32 6.06 16 37 H 0.40 9.70 7.62 -40.82 -0.31 9.38 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 39 H 0.12 1.99 8.04 -52.49 -0.42 1.56 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.84 7.72 -52.49 -0.41 1.43 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -30.96 363.46 -7.97 -38.93 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -6.30 Total: 17.89 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.72 Total: -4.56 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.43 Total: -48.51 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.16 Total: -24.81 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.96 -7.97 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.907 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds