Wall clock time and date at job start Tue Mar 31 2020 08:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47022 * 2 1 4 4 C 1.53001 * 109.47306 * 120.00198 * 2 1 3 5 5 C 1.50695 * 109.47046 * 174.99915 * 4 2 1 6 6 O 1.21276 * 120.00241 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99779 * 179.97438 * 5 4 2 8 8 C 1.46494 * 120.00188 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47081 * 325.00162 * 8 7 5 10 10 C 1.50705 * 109.47219 * 204.99927 * 8 7 5 11 11 O 1.21289 * 120.00128 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99810 * 179.97438 * 10 8 7 13 13 C 1.37093 * 119.99958 * 180.02562 * 12 10 8 14 14 H 1.08005 * 119.99959 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00468 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99703 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00288 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47478 * 59.99843 * 17 15 13 19 19 H 1.48504 * 109.47296 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47154 * 299.99639 * 17 15 13 21 21 C 1.50703 * 109.47581 * 84.99858 * 8 7 5 22 22 C 1.38235 * 120.00292 * 220.00303 * 21 8 7 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 8 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 39.97596 * 21 8 7 27 27 H 1.09005 * 109.47186 * 300.00048 * 1 2 3 28 28 H 1.09003 * 109.47731 * 59.99946 * 1 2 3 29 29 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47186 * 239.99952 * 2 1 3 31 31 H 1.09002 * 109.46848 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47173 * 299.99672 * 3 2 1 33 33 H 1.08995 * 109.47025 * 60.00497 * 3 2 1 34 34 H 1.08999 * 109.46852 * 54.99637 * 4 2 1 35 35 H 1.09005 * 109.46784 * 295.00208 * 4 2 1 36 36 H 0.97005 * 119.99889 * 359.97438 * 7 5 4 37 37 H 0.97003 * 120.00248 * 0.02562 * 12 10 8 38 38 H 0.96994 * 120.00009 * 180.02562 * 16 15 13 39 39 H 1.08001 * 119.99730 * 359.97438 * 22 21 8 40 40 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 42 42 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00455 * 0.02562 * 26 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.8294 1.1888 6 8 4.1449 -0.3748 0.2398 7 7 4.2149 -1.4313 2.1894 8 6 5.6749 -1.5360 2.1310 9 1 5.9878 -1.6797 1.0968 10 6 6.1280 -2.7097 2.9607 11 8 5.3116 -3.3919 3.5430 12 7 7.4404 -3.0018 3.0547 13 6 7.8526 -4.0698 3.8090 14 1 7.1257 -4.6768 4.3282 15 6 9.2056 -4.3708 3.9064 16 7 10.0902 -3.6319 3.2750 17 14 9.7672 -5.8255 4.9347 18 1 9.1600 -7.0718 4.4026 19 1 11.2472 -5.9320 4.8750 20 1 9.3410 -5.6297 6.3437 21 6 6.2913 -0.2713 2.6711 22 6 7.4044 0.2720 2.0573 23 6 7.9694 1.4323 2.5525 24 6 7.4209 2.0499 3.6609 25 6 6.3069 1.5074 4.2738 26 6 5.7432 0.3457 3.7800 27 1 -0.3634 0.5139 0.8900 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6053 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 3.7326 -1.7946 2.9486 37 1 8.0933 -2.4564 2.5886 38 1 11.0346 -3.8422 3.3427 39 1 7.8326 -0.2101 1.1909 40 1 8.8393 1.8567 2.0732 41 1 7.8649 2.9540 4.0504 42 1 5.8786 1.9896 5.1401 43 1 4.8736 -0.0787 4.2596 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066645127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:44 Heat of formation + Delta-G solvation = -85.753170 kcal Electronic energy + Delta-G solvation = -25062.418870 eV Core-core repulsion = 21491.892322 eV Total energy + Delta-G solvation = -3570.526549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57999 -40.17407 -39.50365 -36.73431 -36.15970 -35.49470 -33.52309 -32.36388 -31.76328 -29.56237 -28.05216 -27.91315 -26.24455 -23.58212 -22.95059 -21.98708 -21.02944 -20.75172 -20.06048 -18.55629 -18.14047 -17.30569 -17.10198 -16.58304 -16.49711 -16.18204 -15.78106 -15.63278 -15.28643 -15.17888 -14.69256 -14.62475 -14.26885 -14.21197 -13.65359 -13.55983 -13.42519 -13.23556 -13.00329 -12.92568 -12.71438 -12.48494 -12.19049 -12.14179 -12.04171 -11.94117 -11.72839 -11.56964 -11.55233 -10.82386 -10.77492 -10.16467 -10.09905 -9.80679 -9.57912 -8.51527 -6.01956 0.38441 0.50934 1.36252 1.40864 1.51918 1.65376 1.88153 2.05343 2.31301 2.79943 3.14410 3.25978 3.68952 3.81487 3.91759 3.94161 4.05729 4.13335 4.20845 4.28172 4.29233 4.43514 4.63069 4.68816 4.71606 4.73266 4.77964 4.88234 5.02854 5.07332 5.10835 5.14805 5.27525 5.31776 5.36377 5.50516 5.54454 5.56787 5.59617 5.65796 5.90213 6.10413 6.45084 6.56527 7.01398 7.24772 7.42536 7.91916 8.64944 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.004188 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.113077 B = 6684.687334 C = 7883.079924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.129 4.129 5 C 0.510 3.490 6 O -0.572 6.572 7 N -0.701 5.701 8 C 0.188 3.812 9 H 0.094 0.906 10 C 0.438 3.562 11 O -0.619 6.619 12 N -0.552 5.552 13 C -0.340 4.340 14 H 0.087 0.913 15 C -0.008 4.008 16 N -0.913 5.913 17 Si 0.996 3.004 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.269 1.269 21 C -0.101 4.101 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.116 4.116 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.413 0.587 37 H 0.396 0.604 38 H 0.280 0.720 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.714 11.774 -1.789 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C -0.207 4.207 4 C -0.169 4.169 5 C 0.299 3.701 6 O -0.451 6.451 7 N -0.354 5.354 8 C 0.079 3.921 9 H 0.112 0.888 10 C 0.224 3.776 11 O -0.507 6.507 12 N -0.186 5.186 13 C -0.469 4.469 14 H 0.105 0.895 15 C -0.209 4.209 16 N -0.553 5.553 17 Si 0.819 3.181 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.194 1.194 21 C -0.103 4.103 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.134 4.134 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.250 0.750 37 H 0.230 0.770 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.605 11.614 -2.096 16.552 hybrid contribution 0.839 -0.881 0.334 1.262 sum -10.765 10.733 -1.763 15.304 Atomic orbital electron populations 1.21806 0.92762 1.02525 1.02708 1.20853 0.96676 0.96114 0.96244 1.21907 1.01265 0.95764 1.01783 1.21844 0.88412 1.04589 1.02015 1.21475 0.91709 0.76055 0.80849 1.90635 1.71420 1.48650 1.34398 1.45752 1.05193 1.59539 1.24911 1.19185 0.82745 0.91006 0.99192 0.88811 1.20203 0.83201 0.87682 0.86483 1.90464 1.53220 1.54745 1.52256 1.41801 1.05800 1.27484 1.43510 1.19724 0.92629 1.07342 1.27177 0.89528 1.26134 0.95037 1.01348 0.98422 1.69683 1.02895 1.40134 1.42562 0.84942 0.77355 0.77457 0.78328 1.19465 1.19499 1.19399 1.19930 0.97193 0.95800 0.97334 1.21167 0.95627 0.97026 1.00186 1.21399 1.00295 0.95109 0.97214 1.21519 0.95998 1.00773 0.95558 1.21426 0.96738 0.95540 1.00502 1.21049 1.00401 0.96451 0.95505 0.91477 0.91968 0.91887 0.92438 0.93706 0.92373 0.92178 0.87052 0.86631 0.74984 0.77030 0.91032 0.86307 0.83816 0.83011 0.83435 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 2 C -0.08 -1.64 2.57 -10.79 -0.03 -1.66 16 3 C -0.15 -3.30 8.93 71.98 0.64 -2.66 16 4 C -0.13 -2.69 5.17 29.85 0.15 -2.54 16 5 C 0.51 15.72 7.50 87.66 0.66 16.38 16 6 O -0.57 -21.37 13.63 -3.02 -0.04 -21.41 16 7 N -0.70 -23.41 4.19 -449.70 -1.88 -25.30 16 8 C 0.19 7.44 2.58 43.50 0.11 7.55 16 9 H 0.09 3.88 7.44 -2.39 -0.02 3.86 16 10 C 0.44 21.15 7.15 87.66 0.63 21.78 16 11 O -0.62 -32.71 15.41 -3.06 -0.05 -32.75 16 12 N -0.55 -28.80 5.19 -306.98 -1.59 -30.39 16 13 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 14 H 0.09 5.09 7.16 -2.91 -0.02 5.06 16 15 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 16 N -0.91 -49.13 13.05 21.66 0.28 -48.85 16 17 Si 1.00 42.16 29.55 68.60 2.03 44.18 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 21 C -0.10 -3.69 4.70 -19.87 -0.09 -3.78 16 22 C -0.12 -4.21 9.51 22.27 0.21 -4.00 16 23 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 24 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 25 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 26 C -0.12 -3.80 9.32 22.27 0.21 -3.59 16 27 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 1.40 7.95 -2.38 -0.02 1.39 16 31 H 0.04 1.29 5.95 -2.39 -0.01 1.27 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.41 13.01 7.79 -92.70 -0.72 12.28 16 37 H 0.40 20.26 7.62 -92.71 -0.71 19.56 16 38 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.12 4.05 8.04 -2.91 -0.02 4.03 16 40 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 43 H 0.12 3.73 7.72 -2.91 -0.02 3.71 16 Total: -1.00 -68.44 363.46 3.45 -64.99 By element: Atomic # 1 Polarization: 51.46 SS G_CDS: -0.40 Total: 51.05 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.11 Total: -1.52 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.19 Total: -104.54 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.09 Total: -54.16 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -68.44 3.45 -64.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.765 kcal (2) G-P(sol) polarization free energy of solvation -68.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds