Wall clock time and date at job start Tue Mar 31 2020 08:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47080 * 2 1 4 4 C 1.52998 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47136 * 305.00183 * 4 3 2 6 6 N 1.46498 * 109.47491 * 65.00367 * 4 3 2 7 7 C 1.34785 * 119.99813 * 275.00152 * 6 4 3 8 8 O 1.21284 * 119.99776 * 359.97438 * 7 6 4 9 9 C 1.50690 * 119.99981 * 179.97438 * 7 6 4 10 10 C 1.50702 * 109.47286 * 179.97438 * 9 7 6 11 11 C 1.38234 * 119.99895 * 269.72882 * 10 9 7 12 12 C 1.38240 * 120.00062 * 180.32314 * 11 10 9 13 13 C 1.38234 * 119.99686 * 359.92348 * 12 11 10 14 14 C 1.38234 * 120.00244 * 0.07174 * 13 12 11 15 15 C 1.38230 * 119.99864 * 359.95693 * 14 13 12 16 16 C 1.50699 * 109.46996 * 185.00061 * 4 3 2 17 17 O 1.21293 * 119.99971 * 239.99777 * 16 4 3 18 18 N 1.34780 * 119.99752 * 60.00170 * 16 4 3 19 19 C 1.37104 * 119.99672 * 180.02562 * 18 16 4 20 20 H 1.07995 * 120.00013 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99854 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99862 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47336 * 59.99933 * 23 21 19 25 25 H 1.48503 * 109.47283 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47195 * 299.99800 * 23 21 19 27 27 H 1.09000 * 109.47555 * 59.99726 * 1 2 3 28 28 H 1.09010 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46954 * 299.99240 * 1 2 3 30 30 H 1.09004 * 109.47159 * 240.00287 * 2 1 3 31 31 H 1.09000 * 109.47555 * 120.00274 * 2 1 3 32 32 H 1.09000 * 109.46606 * 60.00547 * 3 2 1 33 33 H 1.09000 * 109.47150 * 300.00522 * 3 2 1 34 34 H 0.97001 * 120.00391 * 94.99577 * 6 4 3 35 35 H 1.09003 * 109.47121 * 60.00095 * 9 7 6 36 36 H 1.09001 * 109.47678 * 300.00200 * 9 7 6 37 37 H 1.08001 * 120.00279 * 0.27436 * 11 10 9 38 38 H 1.07997 * 119.99831 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.99747 * 180.02562 * 13 12 11 40 40 H 1.08002 * 119.99744 * 179.97438 * 14 13 12 41 41 H 1.08000 * 120.00356 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00362 * 0.02562 * 18 16 4 43 43 H 0.96997 * 119.99885 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8529 0.8409 6 7 4.0578 0.8591 -1.2527 7 6 4.1865 -0.4777 -1.3682 8 8 3.8988 -1.1973 -0.4353 9 6 4.6878 -1.0779 -2.6563 10 6 4.7392 -2.5783 -2.5248 11 6 5.8895 -3.1929 -2.0666 12 6 5.9390 -4.5696 -1.9523 13 6 4.8377 -5.3316 -2.2949 14 6 3.6874 -4.7170 -2.7530 15 6 3.6381 -3.3403 -2.8678 16 6 4.0723 2.8579 0.1232 17 8 4.7693 3.3325 -0.7487 18 7 3.7471 3.5963 1.2028 19 6 4.2037 4.8842 1.3152 20 1 4.8243 5.3068 0.5389 21 6 3.8681 5.6456 2.4280 22 7 3.1126 5.1316 3.3724 23 14 4.4908 7.4000 2.5815 24 1 3.9958 8.2032 1.4346 25 1 3.9953 7.9920 3.8501 26 1 5.9758 7.4000 2.5815 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9562 0.8901 33 1 1.6765 1.9564 -0.8899 34 1 4.2882 1.4347 -1.9987 35 1 5.6869 -0.6978 -2.8697 36 1 4.0146 -0.8069 -3.4697 37 1 6.7498 -2.5975 -1.7985 38 1 6.8378 -5.0498 -1.5947 39 1 4.8762 -6.4072 -2.2052 40 1 2.8271 -5.3124 -3.0210 41 1 2.7396 -2.8601 -3.2262 42 1 3.1901 3.2166 1.9003 43 1 2.8780 5.6632 4.1490 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069699511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:40 Heat of formation + Delta-G solvation = -67.543163 kcal Electronic energy + Delta-G solvation = -24547.878458 eV Core-core repulsion = 20978.141554 eV Total energy + Delta-G solvation = -3569.736903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17173 -39.06527 -37.99387 -35.25511 -34.16978 -33.23044 -32.71644 -31.38059 -30.94031 -29.31698 -27.27217 -25.34066 -23.75725 -22.63813 -21.79758 -20.76166 -20.03851 -19.35915 -18.11806 -17.12857 -16.84031 -16.06071 -15.67428 -15.43134 -15.15505 -14.81582 -14.54442 -14.18134 -13.95732 -13.79567 -13.44421 -13.37160 -13.10459 -12.82066 -12.71058 -12.47474 -12.24790 -11.86500 -11.63149 -11.31839 -11.25386 -11.17252 -11.06066 -11.04394 -10.70970 -10.50564 -10.31478 -10.24914 -9.64303 -9.60981 -8.95289 -8.84897 -8.75346 -8.39319 -8.08482 -6.50547 -3.92383 1.28252 1.37186 2.86915 3.13921 3.21456 3.24378 3.37490 3.74845 3.84531 4.12005 4.59991 4.75895 4.79686 4.93338 5.03655 5.12526 5.13191 5.20985 5.32225 5.37100 5.39810 5.43129 5.47203 5.58381 5.70453 5.90578 5.94343 5.98456 6.00868 6.04513 6.22467 6.23721 6.37464 6.39013 6.44828 6.52075 6.54702 6.73020 6.80925 6.94736 7.46476 7.84657 7.93526 8.45865 8.51927 9.05831 9.41094 9.89449 10.66297 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.003047 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.584839 B = 9186.937020 C = 9860.210713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.124 4.124 4 C 0.137 3.863 5 H 0.099 0.901 6 N -0.703 5.703 7 C 0.513 3.487 8 O -0.533 6.533 9 C -0.105 4.105 10 C -0.059 4.059 11 C -0.105 4.105 12 C -0.120 4.120 13 C -0.124 4.124 14 C -0.121 4.121 15 C -0.105 4.105 16 C 0.432 3.568 17 O -0.596 6.596 18 N -0.548 5.548 19 C -0.305 4.305 20 H 0.104 0.896 21 C 0.026 3.974 22 N -0.895 5.895 23 Si 0.933 3.067 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.395 0.605 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -16.001 -10.446 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.163 4.163 4 C 0.028 3.972 5 H 0.116 0.884 6 N -0.355 5.355 7 C 0.299 3.701 8 O -0.410 6.410 9 C -0.145 4.145 10 C -0.059 4.059 11 C -0.123 4.123 12 C -0.138 4.138 13 C -0.143 4.143 14 C -0.139 4.139 15 C -0.123 4.123 16 C 0.217 3.783 17 O -0.483 6.483 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.122 0.878 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.229 0.771 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.767 -16.078 -10.140 19.024 hybrid contribution 0.041 1.017 0.320 1.067 sum -0.726 -15.061 -9.820 17.994 Atomic orbital electron populations 1.21803 0.96702 1.00920 1.01482 1.21573 0.94574 0.96073 1.02976 1.22004 0.93585 0.97640 1.03068 1.20719 0.94297 0.94108 0.88077 0.88362 1.45725 1.66532 1.06555 1.16732 1.20345 0.78052 0.82166 0.89563 1.90720 1.49584 1.60360 1.40366 1.20694 1.04191 0.92645 0.96950 1.19297 0.94211 0.93633 0.98787 1.21013 0.97795 0.94791 0.98715 1.21088 0.98597 0.93902 1.00247 1.21107 0.93639 0.99659 0.99848 1.21073 0.98005 0.94654 1.00160 1.20971 0.97548 0.93887 0.99905 1.19777 0.86366 0.87200 0.84910 1.90497 1.42894 1.72954 1.41921 1.41819 1.45014 1.12778 1.18700 1.19677 1.29745 0.87956 1.06078 0.87799 1.25306 0.96607 1.00517 0.95232 1.69602 1.35953 1.38221 1.09764 0.85890 0.79184 0.81420 0.77579 1.19798 1.20863 1.19801 0.93268 0.93266 0.92813 0.91979 0.91491 0.90440 0.91644 0.75581 0.87899 0.88048 0.86208 0.86231 0.86390 0.86268 0.86306 0.77101 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.11 -1.72 4.54 -26.73 -0.12 -1.84 16 3 C -0.12 -2.03 4.83 -26.73 -0.13 -2.16 16 4 C 0.14 2.50 2.67 -69.08 -0.18 2.32 16 5 H 0.10 1.88 7.58 -51.93 -0.39 1.49 16 6 N -0.70 -11.14 4.90 -54.93 -0.27 -11.41 16 7 C 0.51 7.59 6.39 -10.99 -0.07 7.52 16 8 O -0.53 -9.42 13.17 5.55 0.07 -9.35 16 9 C -0.10 -1.15 5.83 -29.04 -0.17 -1.32 16 10 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 11 C -0.11 -1.22 9.70 -39.58 -0.38 -1.61 16 12 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 13 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 14 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 15 C -0.11 -1.18 9.70 -39.59 -0.38 -1.56 16 16 C 0.43 9.88 7.17 -10.98 -0.08 9.81 16 17 O -0.60 -15.22 15.41 5.55 0.09 -15.14 16 18 N -0.55 -13.56 5.15 -10.96 -0.06 -13.62 16 19 C -0.31 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 22 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 23 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.96 5.64 -51.93 -0.29 0.66 16 31 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 32 H 0.08 1.31 7.43 -51.93 -0.39 0.92 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.41 6.21 7.79 -40.82 -0.32 5.89 16 35 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.39 9.46 7.26 -40.82 -0.30 9.16 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -31.17 361.04 -8.32 -39.49 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -6.25 Total: 16.56 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.04 Total: -4.37 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.40 Total: -48.15 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.16 Total: -24.49 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.17 -8.32 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069699511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.055 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds