Wall clock time and date at job start Tue Mar 31 2020 08:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47080 * 2 1 4 4 C 1.52998 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47136 * 305.00183 * 4 3 2 6 6 N 1.46498 * 109.47491 * 65.00367 * 4 3 2 7 7 C 1.34785 * 119.99813 * 275.00152 * 6 4 3 8 8 O 1.21284 * 119.99776 * 359.97438 * 7 6 4 9 9 C 1.50690 * 119.99981 * 179.97438 * 7 6 4 10 10 C 1.50702 * 109.47286 * 179.97438 * 9 7 6 11 11 C 1.38234 * 119.99895 * 269.72882 * 10 9 7 12 12 C 1.38240 * 120.00062 * 180.32314 * 11 10 9 13 13 C 1.38234 * 119.99686 * 359.92348 * 12 11 10 14 14 C 1.38234 * 120.00244 * 0.07174 * 13 12 11 15 15 C 1.38230 * 119.99864 * 359.95693 * 14 13 12 16 16 C 1.50699 * 109.46996 * 185.00061 * 4 3 2 17 17 O 1.21293 * 119.99971 * 239.99777 * 16 4 3 18 18 N 1.34780 * 119.99752 * 60.00170 * 16 4 3 19 19 C 1.37104 * 119.99672 * 180.02562 * 18 16 4 20 20 H 1.07995 * 120.00013 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99854 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99862 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47336 * 59.99933 * 23 21 19 25 25 H 1.48503 * 109.47283 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47195 * 299.99800 * 23 21 19 27 27 H 1.09000 * 109.47555 * 59.99726 * 1 2 3 28 28 H 1.09010 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46954 * 299.99240 * 1 2 3 30 30 H 1.09004 * 109.47159 * 240.00287 * 2 1 3 31 31 H 1.09000 * 109.47555 * 120.00274 * 2 1 3 32 32 H 1.09000 * 109.46606 * 60.00547 * 3 2 1 33 33 H 1.09000 * 109.47150 * 300.00522 * 3 2 1 34 34 H 0.97001 * 120.00391 * 94.99577 * 6 4 3 35 35 H 1.09003 * 109.47121 * 60.00095 * 9 7 6 36 36 H 1.09001 * 109.47678 * 300.00200 * 9 7 6 37 37 H 1.08001 * 120.00279 * 0.27436 * 11 10 9 38 38 H 1.07997 * 119.99831 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.99747 * 180.02562 * 13 12 11 40 40 H 1.08002 * 119.99744 * 179.97438 * 14 13 12 41 41 H 1.08000 * 120.00356 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00362 * 0.02562 * 18 16 4 43 43 H 0.96997 * 119.99885 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8529 0.8409 6 7 4.0578 0.8591 -1.2527 7 6 4.1865 -0.4777 -1.3682 8 8 3.8988 -1.1973 -0.4353 9 6 4.6878 -1.0779 -2.6563 10 6 4.7392 -2.5783 -2.5248 11 6 5.8895 -3.1929 -2.0666 12 6 5.9390 -4.5696 -1.9523 13 6 4.8377 -5.3316 -2.2949 14 6 3.6874 -4.7170 -2.7530 15 6 3.6381 -3.3403 -2.8678 16 6 4.0723 2.8579 0.1232 17 8 4.7693 3.3325 -0.7487 18 7 3.7471 3.5963 1.2028 19 6 4.2037 4.8842 1.3152 20 1 4.8243 5.3068 0.5389 21 6 3.8681 5.6456 2.4280 22 7 3.1126 5.1316 3.3724 23 14 4.4908 7.4000 2.5815 24 1 3.9958 8.2032 1.4346 25 1 3.9953 7.9920 3.8501 26 1 5.9758 7.4000 2.5815 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9562 0.8901 33 1 1.6765 1.9564 -0.8899 34 1 4.2882 1.4347 -1.9987 35 1 5.6869 -0.6978 -2.8697 36 1 4.0146 -0.8069 -3.4697 37 1 6.7498 -2.5975 -1.7985 38 1 6.8378 -5.0498 -1.5947 39 1 4.8762 -6.4072 -2.2052 40 1 2.8271 -5.3124 -3.0210 41 1 2.7396 -2.8601 -3.2262 42 1 3.1901 3.2166 1.9003 43 1 2.8780 5.6632 4.1490 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069699511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:40 Heat of formation + Delta-G solvation = -86.542896 kcal Electronic energy + Delta-G solvation = -24548.702348 eV Core-core repulsion = 20978.141554 eV Total energy + Delta-G solvation = -3570.560794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44685 -40.27373 -39.40767 -36.67303 -36.08153 -34.50501 -33.65281 -33.34176 -31.71930 -30.62983 -28.26263 -27.12907 -25.24950 -23.42574 -22.76966 -22.06210 -21.21927 -21.05992 -20.06477 -18.48983 -17.78583 -17.32220 -17.16391 -16.75903 -16.35977 -16.06377 -15.91794 -15.66699 -15.46828 -15.12194 -14.80579 -14.29410 -14.18363 -14.15406 -13.91678 -13.55120 -13.50823 -13.32484 -12.95088 -12.88927 -12.62630 -12.47554 -12.43779 -12.14019 -11.97535 -11.94775 -11.81963 -11.55601 -11.50981 -10.87334 -10.50157 -10.09280 -9.97023 -9.74970 -9.58435 -8.50464 -6.00626 0.46484 0.57168 1.37566 1.41936 1.52714 1.68745 1.91958 2.11855 2.32813 2.96979 3.09536 3.16774 3.73319 3.92483 3.94390 3.99678 4.05004 4.16464 4.20991 4.32324 4.36276 4.40875 4.42583 4.61845 4.69831 4.70652 4.75478 4.82334 4.92264 5.00416 5.16574 5.21174 5.22472 5.28985 5.37517 5.44872 5.50523 5.61057 5.67011 5.72678 5.92664 6.17620 6.48132 6.62103 7.04117 7.28283 7.45903 7.95917 8.66168 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.003047 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.584839 B = 9186.937020 C = 9860.210713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.116 4.116 4 C 0.150 3.850 5 H 0.090 0.910 6 N -0.703 5.703 7 C 0.514 3.486 8 O -0.562 6.562 9 C -0.096 4.096 10 C -0.077 4.077 11 C -0.125 4.125 12 C -0.131 4.131 13 C -0.130 4.130 14 C -0.129 4.129 15 C -0.118 4.118 16 C 0.435 3.565 17 O -0.623 6.623 18 N -0.558 5.558 19 C -0.338 4.338 20 H 0.085 0.915 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.995 3.005 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.271 1.271 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.412 0.588 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.397 0.603 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 -16.729 -11.211 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.155 4.155 4 C 0.040 3.960 5 H 0.107 0.893 6 N -0.356 5.356 7 C 0.302 3.698 8 O -0.441 6.441 9 C -0.136 4.136 10 C -0.077 4.077 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.136 4.136 16 C 0.221 3.779 17 O -0.511 6.511 18 N -0.193 5.193 19 C -0.467 4.467 20 H 0.103 0.897 21 C -0.210 4.210 22 N -0.556 5.556 23 Si 0.818 3.182 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.249 0.751 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.231 0.769 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.276 -16.828 -10.916 20.099 hybrid contribution 0.222 1.147 0.538 1.287 sum -1.053 -15.680 -10.378 18.833 Atomic orbital electron populations 1.21769 0.94777 1.01973 1.01983 1.21447 0.96149 0.94455 1.02111 1.21939 0.91928 0.98789 1.02852 1.20468 0.95533 0.90748 0.89214 0.89260 1.45740 1.66872 1.07204 1.15778 1.21006 0.76957 0.81261 0.90539 1.90707 1.50786 1.60792 1.41800 1.20714 1.05472 0.92158 0.95236 1.19459 0.94687 0.93980 0.99621 1.21233 0.98128 0.95615 0.99347 1.21390 0.99647 0.93729 1.00102 1.21461 0.93301 1.00971 0.99037 1.21417 0.98899 0.94663 0.99669 1.21228 0.97788 0.94545 1.00074 1.20535 0.85055 0.88588 0.83690 1.90468 1.43826 1.74154 1.42652 1.41869 1.45514 1.12563 1.19376 1.19698 1.31020 0.89401 1.06569 0.89660 1.26104 0.96358 1.04124 0.94451 1.69672 1.36287 1.39600 1.10056 0.84954 0.78560 0.76679 0.77963 1.19361 1.19614 1.19639 0.92310 0.91954 0.92789 0.92139 0.93024 0.91209 0.91257 0.75085 0.86326 0.85412 0.86017 0.84550 0.84079 0.84155 0.85225 0.76916 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.10 -3.04 4.54 30.59 0.14 -2.90 16 3 C -0.12 -3.78 4.83 30.59 0.15 -3.63 16 4 C 0.15 5.52 2.67 44.24 0.12 5.64 16 5 H 0.09 3.49 7.58 -2.39 -0.02 3.48 16 6 N -0.70 -22.01 4.90 -446.10 -2.19 -24.20 16 7 C 0.51 14.84 6.39 87.65 0.56 15.40 16 8 O -0.56 -19.70 13.17 -3.04 -0.04 -19.74 16 9 C -0.10 -1.98 5.83 29.10 0.17 -1.81 16 10 C -0.08 -1.74 4.37 -19.87 -0.09 -1.82 16 11 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 12 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 13 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 14 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 15 C -0.12 -2.46 9.70 22.27 0.22 -2.25 16 16 C 0.43 20.27 7.17 87.66 0.63 20.90 16 17 O -0.62 -32.36 15.41 -3.07 -0.05 -32.41 16 18 N -0.56 -28.28 5.15 -306.98 -1.58 -29.86 16 19 C -0.34 -18.69 9.68 84.04 0.81 -17.87 16 20 H 0.09 4.96 7.16 -2.91 -0.02 4.93 16 21 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 22 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 23 Si 1.00 41.88 29.55 68.60 2.03 43.90 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.79 5.64 -2.38 -0.01 1.78 16 31 H 0.05 1.67 7.85 -2.39 -0.02 1.65 16 32 H 0.07 2.38 7.43 -2.39 -0.02 2.36 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.41 12.32 7.79 -92.71 -0.72 11.60 16 35 H 0.12 2.06 8.08 -2.39 -0.02 2.04 16 36 H 0.13 1.93 8.09 -2.39 -0.02 1.91 16 37 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.40 19.52 7.26 -92.71 -0.67 18.84 16 43 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -66.90 361.04 2.86 -64.04 By element: Atomic # 1 Polarization: 47.71 SS G_CDS: -0.37 Total: 47.34 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 4.77 Total: -0.51 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -3.49 Total: -102.62 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.09 Total: -52.15 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -66.90 2.86 -64.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069699511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.502 kcal (2) G-P(sol) polarization free energy of solvation -66.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds