Wall clock time and date at job start Tue Mar 31 2020 09:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 H 1.09001 * 109.46652 * 55.00422 * 3 2 1 5 5 C 1.52996 * 109.47302 * 295.00294 * 3 2 1 6 6 C 1.53002 * 109.46891 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46978 * 60.00410 * 6 5 3 8 8 C 1.53006 * 109.47164 * 299.99874 * 7 6 5 9 9 H 1.08998 * 109.46505 * 299.99708 * 8 7 6 10 10 N 1.46500 * 109.47249 * 180.02562 * 8 7 6 11 11 S 1.65601 * 120.00250 * 94.99822 * 10 8 7 12 12 O 1.42102 * 106.40176 * 178.54141 * 11 10 8 13 13 O 1.42098 * 106.40126 * 311.45877 * 11 10 8 14 14 N 1.65596 * 107.21671 * 64.99731 * 11 10 8 15 15 C 1.46494 * 120.00461 * 269.99740 * 14 11 10 16 16 C 1.46504 * 119.99900 * 90.00184 * 14 11 10 17 17 C 1.50696 * 109.47053 * 94.99560 * 16 14 11 18 18 H 1.08000 * 120.00370 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99805 * 180.02562 * 17 16 14 20 20 N 1.31523 * 119.99812 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00162 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47135 * 90.00274 * 21 19 17 23 23 H 1.48508 * 109.47437 * 209.99929 * 21 19 17 24 24 H 1.48500 * 109.47301 * 329.99923 * 21 19 17 25 25 C 1.52997 * 109.47127 * 59.99836 * 8 7 6 26 26 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46818 * 299.99696 * 1 2 3 28 28 H 1.09004 * 109.47242 * 59.99175 * 1 2 3 29 29 H 1.09002 * 109.46818 * 240.00304 * 2 1 3 30 30 H 1.08994 * 109.47281 * 120.00855 * 2 1 3 31 31 H 1.08992 * 109.47554 * 299.99692 * 5 3 2 32 32 H 1.09004 * 109.47108 * 59.99942 * 5 3 2 33 33 H 1.09002 * 109.47097 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47142 * 300.00176 * 6 5 3 35 35 H 1.09001 * 109.47375 * 59.99908 * 7 6 5 36 36 H 1.09000 * 109.47140 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99287 * 275.00133 * 10 8 7 38 38 H 1.09007 * 109.47245 * 90.00133 * 15 14 11 39 39 H 1.08998 * 109.47658 * 210.00205 * 15 14 11 40 40 H 1.09007 * 109.47048 * 330.00607 * 15 14 11 41 41 H 1.08996 * 109.47278 * 214.99486 * 16 14 11 42 42 H 1.09000 * 109.47045 * 335.00190 * 16 14 11 43 43 H 0.97002 * 119.99871 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47153 * 180.02562 * 25 8 7 45 45 H 1.09001 * 109.46832 * 60.00321 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1448 3.5693 -1.3069 7 6 3.6695 3.5716 -1.1810 8 6 4.0744 2.8874 0.1263 9 1 3.6395 3.4262 0.9681 10 7 5.5344 2.8901 0.2471 11 16 6.2924 4.0895 1.1011 12 8 7.6818 3.7940 1.0609 13 8 5.7453 5.3173 0.6402 14 7 5.8267 3.9345 2.6826 15 6 4.6379 4.6391 3.1687 16 6 6.6038 3.0927 3.5959 17 6 7.5936 3.9460 4.3461 18 1 7.6392 5.0091 4.1615 19 6 8.4412 3.3695 5.2682 20 7 9.3048 4.1144 5.9233 21 14 8.3630 1.5306 5.5869 22 1 9.2914 0.8285 4.6648 23 1 8.7578 1.2544 6.9917 24 1 6.9778 1.0470 5.3579 25 6 3.5648 1.4447 0.1260 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8898 31 1 2.0698 1.5877 -2.1491 32 1 0.5489 2.1253 -1.3968 33 1 1.8560 4.0568 -2.2381 34 1 1.7098 4.1080 -0.4650 35 1 4.1045 3.0328 -2.0229 36 1 4.0326 4.5993 -1.1812 37 1 6.0571 2.1893 -0.1731 38 1 3.7610 4.0048 3.0387 39 1 4.7621 4.8750 4.2256 40 1 4.5060 5.5618 2.6035 41 1 5.9316 2.6082 4.3040 42 1 7.1381 2.3337 3.0244 43 1 9.9009 3.7088 6.5723 44 1 3.8529 0.9574 1.0575 45 1 3.9998 0.9060 -0.7159 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077403488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:53 Heat of formation + Delta-G solvation = -105.118911 kcal Electronic energy + Delta-G solvation = -24581.921740 eV Core-core repulsion = 21145.999382 eV Total energy + Delta-G solvation = -3435.922359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.34164 -36.63929 -35.64878 -35.21835 -35.17792 -32.93381 -32.37974 -29.88010 -28.42211 -28.30584 -25.16852 -23.96732 -22.54482 -21.92164 -20.86368 -20.20207 -18.82442 -17.31410 -16.92146 -16.62224 -16.21628 -15.39195 -15.08312 -14.78942 -14.28226 -14.18867 -14.02899 -13.69977 -13.58267 -13.15567 -13.13281 -12.63041 -12.52005 -12.36734 -12.01861 -11.79768 -11.70965 -11.61830 -11.47133 -11.42973 -11.30933 -11.22180 -11.20824 -11.00867 -10.68621 -10.65877 -10.48185 -10.38467 -10.29480 -10.15203 -9.55885 -9.28420 -8.59328 -8.12558 -6.08120 -4.07468 1.17269 3.26736 3.31986 3.33433 3.45064 4.08504 4.38180 4.41230 4.51717 4.63954 4.83328 4.93235 4.94870 5.01098 5.16750 5.20839 5.23567 5.29305 5.36324 5.45428 5.46716 5.50600 5.57580 5.68790 5.71379 5.78114 5.87690 5.90365 5.94771 5.97951 6.04163 6.12852 6.20072 6.21543 6.28830 6.38299 6.45710 6.71475 7.02290 7.16163 7.43424 7.58141 8.49143 8.96791 9.50819 11.05510 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.004518 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.604764 B = 6195.998220 C = 7119.248360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.073 0.927 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.139 4.139 8 C 0.158 3.842 9 H 0.082 0.918 10 N -1.131 6.131 11 S 2.781 3.219 12 O -0.964 6.964 13 O -0.992 6.992 14 N -0.991 5.991 15 C 0.093 3.907 16 C 0.228 3.772 17 C -0.533 4.533 18 H 0.078 0.922 19 C 0.073 3.927 20 N -0.895 5.895 21 Si 0.873 3.127 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.265 1.265 25 C -0.120 4.120 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.265 0.735 44 H 0.071 0.929 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.401 -7.517 -13.500 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.092 0.908 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.178 4.178 8 C 0.050 3.950 9 H 0.100 0.900 10 N -0.888 5.888 11 S 2.789 3.211 12 O -0.948 6.948 13 O -0.975 6.975 14 N -0.833 5.833 15 C -0.054 4.054 16 C 0.105 3.895 17 C -0.572 4.572 18 H 0.096 0.904 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.699 3.301 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.244 0.756 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.755 -6.707 -13.602 23.351 hybrid contribution 0.146 -1.553 0.329 1.594 sum -17.609 -8.260 -13.273 23.548 Atomic orbital electron populations 1.21822 0.95960 1.01395 1.01914 1.21556 0.95809 0.96268 1.02052 1.21180 0.94890 0.96083 0.98448 0.90844 1.21673 1.00558 0.95770 0.97361 1.21511 0.95365 0.96646 1.02083 1.22100 0.95836 1.02137 0.97715 1.20681 0.79307 0.96859 0.98123 0.90024 1.56382 1.14982 1.47202 1.70281 1.01993 0.73046 0.73384 0.72724 1.93647 1.29978 1.84742 1.86415 1.93531 1.80629 1.42764 1.80573 1.57368 1.38180 1.61073 1.26633 1.21421 0.85637 0.95745 1.02573 1.19417 0.90829 0.90149 0.89124 1.21392 1.17471 0.96776 1.21532 0.90427 1.24876 0.94762 0.97913 0.95441 1.69902 1.21624 1.35670 1.26140 0.86913 0.79041 0.86175 0.77929 1.19801 1.20952 1.18974 1.21908 0.95253 0.95902 1.02859 0.93027 0.92721 0.92537 0.92077 0.91895 0.92010 0.91776 0.91768 0.91714 0.91622 0.90392 0.75634 0.94307 0.90100 0.91210 0.94919 0.95356 0.92521 0.91027 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.71 2.19 -90.62 -0.20 -0.91 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.12 -0.89 4.96 -26.73 -0.13 -1.02 16 6 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 7 C -0.14 -1.51 5.53 -26.73 -0.15 -1.66 16 8 C 0.16 1.86 2.68 -67.93 -0.18 1.67 16 9 H 0.08 0.98 6.61 -51.93 -0.34 0.64 16 10 N -1.13 -15.89 5.53 -4.89 -0.03 -15.92 16 11 S 2.78 53.98 6.01 -107.50 -0.65 53.34 16 12 O -0.96 -22.89 17.11 -57.17 -0.98 -23.87 16 13 O -0.99 -20.26 16.00 -57.17 -0.91 -21.18 16 14 N -0.99 -19.91 3.23 -123.05 -0.40 -20.31 16 15 C 0.09 1.54 10.09 59.84 0.60 2.14 16 16 C 0.23 5.37 4.15 -5.19 -0.02 5.34 16 17 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 18 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 21 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 25 C -0.12 -1.16 4.73 -26.73 -0.13 -1.28 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.00 7.64 -51.93 -0.40 0.61 16 37 H 0.41 4.99 8.84 -34.48 -0.30 4.69 16 38 H 0.04 0.51 7.41 -51.92 -0.38 0.12 16 39 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 40 H 0.07 1.11 7.02 -51.92 -0.36 0.75 16 41 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 42 H 0.03 0.67 7.03 -51.93 -0.37 0.30 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -34.37 359.63 -9.90 -44.27 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.87 Total: 0.90 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.59 Total: -12.19 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.35 Total: -63.11 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.89 Total: -45.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.65 Total: 53.34 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.37 -9.90 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077403488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.846 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds