Wall clock time and date at job start Tue Mar 31 2020 09:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 H 1.09001 * 109.46652 * 55.00422 * 3 2 1 5 5 C 1.52996 * 109.47302 * 295.00294 * 3 2 1 6 6 C 1.53002 * 109.46891 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46978 * 60.00410 * 6 5 3 8 8 C 1.53006 * 109.47164 * 299.99874 * 7 6 5 9 9 H 1.08998 * 109.46505 * 299.99708 * 8 7 6 10 10 N 1.46500 * 109.47249 * 180.02562 * 8 7 6 11 11 S 1.65601 * 120.00250 * 94.99822 * 10 8 7 12 12 O 1.42102 * 106.40176 * 178.54141 * 11 10 8 13 13 O 1.42098 * 106.40126 * 311.45877 * 11 10 8 14 14 N 1.65596 * 107.21671 * 64.99731 * 11 10 8 15 15 C 1.46494 * 120.00461 * 269.99740 * 14 11 10 16 16 C 1.46504 * 119.99900 * 90.00184 * 14 11 10 17 17 C 1.50696 * 109.47053 * 94.99560 * 16 14 11 18 18 H 1.08000 * 120.00370 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99805 * 180.02562 * 17 16 14 20 20 N 1.31523 * 119.99812 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00162 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47135 * 90.00274 * 21 19 17 23 23 H 1.48508 * 109.47437 * 209.99929 * 21 19 17 24 24 H 1.48500 * 109.47301 * 329.99923 * 21 19 17 25 25 C 1.52997 * 109.47127 * 59.99836 * 8 7 6 26 26 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46818 * 299.99696 * 1 2 3 28 28 H 1.09004 * 109.47242 * 59.99175 * 1 2 3 29 29 H 1.09002 * 109.46818 * 240.00304 * 2 1 3 30 30 H 1.08994 * 109.47281 * 120.00855 * 2 1 3 31 31 H 1.08992 * 109.47554 * 299.99692 * 5 3 2 32 32 H 1.09004 * 109.47108 * 59.99942 * 5 3 2 33 33 H 1.09002 * 109.47097 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47142 * 300.00176 * 6 5 3 35 35 H 1.09001 * 109.47375 * 59.99908 * 7 6 5 36 36 H 1.09000 * 109.47140 * 179.97438 * 7 6 5 37 37 H 0.97002 * 119.99287 * 275.00133 * 10 8 7 38 38 H 1.09007 * 109.47245 * 90.00133 * 15 14 11 39 39 H 1.08998 * 109.47658 * 210.00205 * 15 14 11 40 40 H 1.09007 * 109.47048 * 330.00607 * 15 14 11 41 41 H 1.08996 * 109.47278 * 214.99486 * 16 14 11 42 42 H 1.09000 * 109.47045 * 335.00190 * 16 14 11 43 43 H 0.97002 * 119.99871 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47153 * 180.02562 * 25 8 7 45 45 H 1.09001 * 109.46832 * 60.00321 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1448 3.5693 -1.3069 7 6 3.6695 3.5716 -1.1810 8 6 4.0744 2.8874 0.1263 9 1 3.6395 3.4262 0.9681 10 7 5.5344 2.8901 0.2471 11 16 6.2924 4.0895 1.1011 12 8 7.6818 3.7940 1.0609 13 8 5.7453 5.3173 0.6402 14 7 5.8267 3.9345 2.6826 15 6 4.6379 4.6391 3.1687 16 6 6.6038 3.0927 3.5959 17 6 7.5936 3.9460 4.3461 18 1 7.6392 5.0091 4.1615 19 6 8.4412 3.3695 5.2682 20 7 9.3048 4.1144 5.9233 21 14 8.3630 1.5306 5.5869 22 1 9.2914 0.8285 4.6648 23 1 8.7578 1.2544 6.9917 24 1 6.9778 1.0470 5.3579 25 6 3.5648 1.4447 0.1260 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8898 31 1 2.0698 1.5877 -2.1491 32 1 0.5489 2.1253 -1.3968 33 1 1.8560 4.0568 -2.2381 34 1 1.7098 4.1080 -0.4650 35 1 4.1045 3.0328 -2.0229 36 1 4.0326 4.5993 -1.1812 37 1 6.0571 2.1893 -0.1731 38 1 3.7610 4.0048 3.0387 39 1 4.7621 4.8750 4.2256 40 1 4.5060 5.5618 2.6035 41 1 5.9316 2.6082 4.3040 42 1 7.1381 2.3337 3.0244 43 1 9.9009 3.7088 6.5723 44 1 3.8529 0.9574 1.0575 45 1 3.9998 0.9060 -0.7159 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077403488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:52 Heat of formation + Delta-G solvation = -130.211616 kcal Electronic energy + Delta-G solvation = -24583.009842 eV Core-core repulsion = 21145.999382 eV Total energy + Delta-G solvation = -3437.010460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.11439 -38.28997 -37.31341 -36.87215 -36.09321 -34.51467 -33.71179 -30.61584 -30.29252 -29.12895 -26.80954 -24.60557 -23.85027 -23.30328 -21.63172 -21.05320 -20.12701 -19.17878 -18.62090 -18.22637 -17.48763 -16.73599 -16.15571 -15.81456 -15.62673 -15.27159 -15.05995 -14.79140 -14.59978 -14.49715 -14.31782 -14.12092 -13.79427 -13.45312 -13.42790 -13.18611 -13.14690 -12.98180 -12.90241 -12.66790 -12.38430 -12.27118 -12.25642 -12.14509 -11.98558 -11.94852 -11.71304 -11.65979 -11.29909 -11.12355 -10.99328 -10.78795 -10.32528 -9.78588 -8.29500 -6.35792 -0.36143 1.36639 1.41054 1.49396 2.01386 2.35373 2.62009 3.04374 3.43003 3.68776 3.81194 3.90126 4.03783 4.10391 4.24344 4.25053 4.49272 4.52717 4.61108 4.63456 4.64262 4.69265 4.73782 4.83883 4.85538 4.86474 4.95665 5.03801 5.12869 5.21762 5.26273 5.28644 5.31945 5.35893 5.37790 5.42461 5.47351 5.49044 5.61399 5.67775 5.70176 6.14700 6.30965 6.67284 7.27314 8.88250 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.004518 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.604764 B = 6195.998220 C = 7119.248360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.072 0.928 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.139 4.139 8 C 0.149 3.851 9 H 0.081 0.919 10 N -1.113 6.113 11 S 2.794 3.206 12 O -1.014 7.014 13 O -1.008 7.008 14 N -0.999 5.999 15 C 0.086 3.914 16 C 0.236 3.764 17 C -0.546 4.546 18 H 0.026 0.974 19 C 0.006 3.994 20 N -0.949 5.949 21 Si 0.946 3.054 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.227 1.227 25 C -0.115 4.115 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.422 0.578 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.034 0.966 43 H 0.268 0.732 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.046 -10.348 -14.403 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.091 0.909 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.178 4.178 8 C 0.042 3.958 9 H 0.099 0.901 10 N -0.875 5.875 11 S 2.802 3.198 12 O -0.998 6.998 13 O -0.991 6.991 14 N -0.840 5.840 15 C -0.060 4.060 16 C 0.111 3.889 17 C -0.586 4.586 18 H 0.044 0.956 19 C -0.192 4.192 20 N -0.589 5.589 21 Si 0.767 3.233 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.149 1.149 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.258 0.742 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.435 -9.519 -14.523 26.817 hybrid contribution 0.933 -0.541 0.536 1.204 sum -19.503 -10.060 -13.987 26.023 Atomic orbital electron populations 1.21817 0.95369 1.01742 1.02113 1.21525 0.96287 0.95530 1.02092 1.21172 0.93643 0.96782 0.98756 0.90934 1.21649 1.01348 0.94709 0.97194 1.21511 0.93500 0.97755 1.02604 1.22091 0.97613 1.00596 0.97529 1.21002 0.77364 0.98763 0.98630 0.90127 1.55898 1.16248 1.46319 1.69024 1.01336 0.71998 0.73687 0.72786 1.93574 1.33580 1.85541 1.87111 1.93506 1.80564 1.44282 1.80727 1.57301 1.38879 1.61276 1.26554 1.21650 0.85844 0.96652 1.01825 1.19203 0.90452 0.89681 0.89581 1.21738 1.19180 0.95273 1.22370 0.95569 1.25973 0.94044 1.04185 0.94987 1.70082 1.23030 1.38512 1.27323 0.85757 0.81153 0.78495 0.77879 1.19438 1.20417 1.14935 1.21891 0.96331 0.93992 1.03224 0.92669 0.92884 0.91984 0.91686 0.92253 0.91524 0.90493 0.90857 0.91751 0.90797 0.92848 0.74228 0.89964 0.91159 0.91111 0.92436 0.94787 0.92326 0.91228 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 71.98 0.70 -0.88 16 2 C -0.12 -1.36 5.40 30.59 0.17 -1.19 16 3 C -0.08 -1.11 2.19 -10.79 -0.02 -1.13 16 4 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 5 C -0.11 -1.34 4.96 30.59 0.15 -1.18 16 6 C -0.12 -1.73 5.92 30.59 0.18 -1.54 16 7 C -0.14 -2.78 5.53 30.60 0.17 -2.61 16 8 C 0.15 3.17 2.68 44.99 0.12 3.29 16 9 H 0.08 1.74 6.61 -2.39 -0.02 1.73 16 10 N -1.11 -29.63 5.53 -169.38 -0.94 -30.56 16 11 S 2.79 108.45 6.01 -56.49 -0.34 108.11 16 12 O -1.01 -49.17 17.11 -128.00 -2.19 -51.36 16 13 O -1.01 -41.54 16.00 -128.00 -2.05 -43.59 16 14 N -1.00 -39.57 3.23 -543.23 -1.75 -41.32 16 15 C 0.09 2.74 10.09 127.77 1.29 4.03 16 16 C 0.24 10.82 4.15 85.63 0.36 11.18 16 17 C -0.55 -32.13 9.94 25.60 0.25 -31.88 16 18 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 19 C 0.01 0.34 5.47 84.65 0.46 0.80 16 20 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 21 Si 0.95 42.73 27.47 68.60 1.88 44.62 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.23 -8.80 6.54 99.48 0.65 -8.15 16 25 C -0.12 -1.87 4.73 30.59 0.14 -1.72 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.57 6.56 -2.39 -0.02 0.55 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.76 6.57 -2.38 -0.02 0.75 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.33 7.64 -2.39 -0.02 1.32 16 37 H 0.42 9.54 8.84 -96.74 -0.85 8.68 16 38 H 0.08 1.92 7.41 -2.38 -0.02 1.90 16 39 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 40 H 0.07 2.23 7.02 -2.38 -0.02 2.22 16 41 H 0.06 2.38 7.17 -2.39 -0.02 2.36 16 42 H 0.03 1.54 7.03 -2.39 -0.02 1.52 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -77.34 359.63 -1.07 -78.41 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.05 Total: 18.86 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.97 Total: -22.84 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -2.39 Total: -132.21 kcal Atomic # 8 Polarization: -90.71 SS G_CDS: -4.24 Total: -94.95 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.62 kcal Atomic # 16 Polarization: 108.45 SS G_CDS: -0.34 Total: 108.11 kcal Total: -77.34 -1.07 -78.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077403488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.804 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds